NO12G02030.1, NO12G02030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02030.1
Unique NameNO12G02030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr12:576018..576854 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:576018..576854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02030.1 vs.
Match: EWM25798.1 (Zinc finger, RING/FYVE/PHD-type [Nannochloropsis gaditana])

HSP 1 Score: 240.4 bits (612), Expect = 6.900e-60
Identity = 127/253 (50.20%), Postives = 161/253 (63.64%), Query Frame = 0 
Query:   32 TRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQ-------SQALQIRPRDTPLSQDMFILCLP-AEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELD-PDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276
            T  G+VRAG L  F TC+LC GYLRDPYLL CC  RRYCKDCLIRN+RQ DSRCPN  CQ Y+GAKLS +GRPD QLKD+M+KLLP+V  +ER REEAFY  +    P +   Q  P  S+        Q ++    DTPL QD+ +LCLP   G   +   V  +   I    + LP L+LPYLKVQRR  V HL  VLVA+L L  +     +++++C+G+ + G HSL+FIE+  W     PLTL Y++K
Sbjct:   53 TEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKIT---SALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKK 302
The following BLAST results are available for this feature:
BLAST of NO12G02030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25798.16.900e-6050.20Zinc finger, RING/FYVE/PHD-type [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02030NO12G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02030.1NO12G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02030.1.cds1NO12G02030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02030.1 ID=NO12G02030.1|Name=NO12G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGCTGTCCAACGACGACAGCGACCAGCAAAATCTAGCGCACCAGATACC
ACCGAACTCAGAGCTGCCAACGGTGACGGCATCGATATCCTCCACGAGGC
TAGGAAGTGTTCGTGCGGGAGCACTGAACGCCTTTTTCACGTGCTCGCTC
TGCGAGGGCTACCTGCGGGACCCCTACTTACTTGTGTGCTGCTTCTCGCG
TCGGTATTGCAAGGACTGCCTCATCCGGAATATGCGACAACATGACAGTA
GATGTCCCAATGCGGCCTGTCAAGCGTACCTGGGTGCCAAGCTCAGCTTG
CTCGGGCGGCCTGACGCACAGCTCAAAGACATGATGCTCAAGCTCCTGCC
TGAAGTTTTTGCGGAGGAGCGGCAACGGGAGGAAGCCTTCTATTTGGCAC
GGGAGAGTCGCTACCCATCTACTGTTCCAGAGCAAGACCTCCCTGCGACA
AGCCAGTCACAGGCATTGCAGATCCGCCCGCGCGACACGCCCTTGAGCCA
GGACATGTTCATCTTGTGTCTGCCTGCAGAGGGTTCAGGGGAGGACGGAG
CGGCAGTAACAGGAGAGCCAGGAGCCATTGCACAGGAGTTAAACGTGCTT
CCTGGCCTTCAACTTCCTTATCTTAAAGTGCAGCGCCGCATGCAAGTCTT
ACATTTGCGCCGTGTGCTTGTGGCCGCCTTGGGGCTCGCGACTGAGCTGG
ATCCAGACGAGGTGGACGTGATATGCAAGGGCGAAGTGCTAACCGGTCAG
CACTCGCTCTTCTTTATCGAGAAAATCAAGTGGGCACAAGAACGGCCACC
GCTTACCCTCCAGTACCGAAGGAAGGCCACATCTTGA
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protein sequence of NO12G02030.1

>NO12G02030.1-protein ID=NO12G02030.1-protein|Name=NO12G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MLSNDDSDQQNLAHQIPPNSELPTVTASISSTRLGSVRAGALNAFFTCSL
CEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDSRCPNAACQAYLGAKLSL
LGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPAT
SQSQALQIRPRDTPLSQDMFILCLPAEGSGEDGAAVTGEPGAIAQELNVL
PGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQ
HSLFFIEKIKWAQERPPLTLQYRRKATS*
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mRNA from alignment at chr12:576018..576854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02030.1 ID=NO12G02030.1|Name=NO12G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp|location=Sequence derived from alignment at chr12:576018..576854+ (Nannochloropsis oceanica)
ATGCTGTCCAACGACGACAGCGACCAGCAAAATCTAGCGCACCAGATACC
ACCGAACTCAGAGCTGCCAACGGTGACGGCATCGATATCCTCCACGAGGC
TAGGAAGTGTTCGTGCGGGAGCACTGAACGCCTTTTTCACGTGCTCGCTC
TGCGAGGGCTACCTGCGGGACCCCTACTTACTTGTGTGCTGCTTCTCGCG
TCGGTATTGCAAGGACTGCCTCATCCGGAATATGCGACAACATGACAGTA
GATGTCCCAATGCGGCCTGTCAAGCGTACCTGGGTGCCAAGCTCAGCTTG
CTCGGGCGGCCTGACGCACAGCTCAAAGACATGATGCTCAAGCTCCTGCC
TGAAGTTTTTGCGGAGGAGCGGCAACGGGAGGAAGCCTTCTATTTGGCAC
GGGAGAGTCGCTACCCATCTACTGTTCCAGAGCAAGACCTCCCTGCGACA
AGCCAGTCACAGGCATTGCAGATCCGCCCGCGCGACACGCCCTTGAGCCA
GGACATGTTCATCTTGTGTCTGCCTGCAGAGGGTTCAGGGGAGGACGGAG
CGGCAGTAACAGGAGAGCCAGGAGCCATTGCACAGGAGTTAAACGTGCTT
CCTGGCCTTCAACTTCCTTATCTTAAAGTGCAGCGCCGCATGCAAGTCTT
ACATTTGCGCCGTGTGCTTGTGGCCGCCTTGGGGCTCGCGACTGAGCTGG
ATCCAGACGAGGTGGACGTGATATGCAAGGGCGAAGTGCTAACCGGTCAG
CACTCGCTCTTCTTTATCGAGAAAATCAAGTGGGCACAAGAACGGCCACC
GCTTACCCTCCAGTACCGAAGGAAGGCCACATCTTGA
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Coding sequence (CDS) from alignment at chr12:576018..576854+

>NO12G02030.1 ID=NO12G02030.1|Name=NO12G02030.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr12:576018..576854+ (Nannochloropsis oceanica)
ATGCTGTCCAACGACGACAGCGACCAGCAAAATCTAGCGCACCAGATACC
ACCGAACTCAGAGCTGCCAACGGTGACGGCATCGATATCCTCCACGAGGC
TAGGAAGTGTTCGTGCGGGAGCACTGAACGCCTTTTTCACGTGCTCGCTC
TGCGAGGGCTACCTGCGGGACCCCTACTTACTTGTGTGCTGCTTCTCGCG
TCGGTATTGCAAGGACTGCCTCATCCGGAATATGCGACAACATGACAGTA
GATGTCCCAATGCGGCCTGTCAAGCGTACCTGGGTGCCAAGCTCAGCTTG
CTCGGGCGGCCTGACGCACAGCTCAAAGACATGATGCTCAAGCTCCTGCC
TGAAGTTTTTGCGGAGGAGCGGCAACGGGAGGAAGCCTTCTATTTGGCAC
GGGAGAGTCGCTACCCATCTACTGTTCCAGAGCAAGACCTCCCTGCGACA
AGCCAGTCACAGGCATTGCAGATCCGCCCGCGCGACACGCCCTTGAGCCA
GGACATGTTCATCTTGTGTCTGCCTGCAGAGGGTTCAGGGGAGGACGGAG
CGGCAGTAACAGGAGAGCCAGGAGCCATTGCACAGGAGTTAAACGTGCTT
CCTGGCCTTCAACTTCCTTATCTTAAAGTGCAGCGCCGCATGCAAGTCTT
ACATTTGCGCCGTGTGCTTGTGGCCGCCTTGGGGCTCGCGACTGAGCTGG
ATCCAGACGAGGTGGACGTGATATGCAAGGGCGAAGTGCTAACCGGTCAG
CACTCGCTCTTCTTTATCGAGAAAATCAAGTGGGCACAAGAACGGCCACC
GCTTACCCTCCAGTACCGAAGGAAGGCCACATCTTGA
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Synonyms
Publications