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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:569526..572626 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02010.1 vs.
Match: EWM25809.1 (folylpolyglutamate mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 634.8 bits (1636), Expect = 2.800e-178 Identity = 342/631 (54.20%), Postives = 423/631 (67.04%), Query Frame = 0
Query: 6 MVQPDQGYARSLEALNSTQLHGDSLRRAYSARRDTVRAMNVYLHRLDLAKGVASLPTLHVTGSKGKGSTCAFVESVLRRQGVRTVLFTSPHLVRVNERIRLDGQPLTDKQWSHHFWAMWNRLQETAPPPPTHQSKRP--SSTSPYAIPLAINTYEAEPEAVPGYFRFLTLLCFWVALQEKSDALILEVGVGGRFDATNVVPRPVACAITTMDLEHTDLLGGSIEEIAWEKGGIIKSGVPCFVGPQPTRYTASTLRVLRTCALESPGAALYLVKPLPTEINLGIAGDFQAMNAALALALVQQYHISQSHSHQPPGQVGLVGDADKALDEKGAAAWVDVAPYLLANEPTVREGLEACAWPGRCQRLDWGPCCRFYIDGAHTEESMRTAVEWFDGQVSQKKRGKRRRVLLFNCGEEKNVPDLLSYLLNHRATAVVIASVSEEPALLRFDTVLFCPVASVKPTLAHARAARMLLLEEGEEGSYARQLDQTMLHSLCEA---LDAKAEVQLEGLQWQQALRDTWRILHAYHLKKWAQEQKQKQEQ------EEEQEQEQE-----------TDWIDRADRQTRTAVFPSVAAVLEEIKDMLAVEPLEVLVTGSLYLVGNVLGQLEEESSPSSPSSR 615
M Q Y S+ ALNSTQL GD+L RA ++R T+ M+VYL RL LA+ + LP LHV GSKGKGSTCAF E+VL +QGVRT LFTSPHLVRVNERIRL+G+PLTDKQWS HFW +WNRLQ+ + S+S A A T AEP+ PGYFR LTLL FWVA+ E+ D LILEVGVGGRFDATNVVP+PVACAITT+DLEHTDLLG +IEEIAWEKGGIIK G PCF+ PQPT Y +S LRVLR C L++PGA L++VKPLP ++ LGIAGDFQAMNAALALALV++Y++ + + + + + AWVDV PY+ + P V +GL++C WPGRCQRLDWG C F+IDGAHT ES+++AV WF GQ R R LLF CGE K P+LL++L V + S + +F FCPV KPTL+ AR+AR LLLE E S+ARQLDQ++LH+LC+A ++A+ L WQQ LRDTWRIL AY L +AQ+++ + E + + +E + WI+ AD+QTR+ VFPSVAA + EI M +EP +VLVTGSLYLVGNVL +E SP S S +
Sbjct: 1 MDMTSQDYITSIAALNSTQLTGDALHRANNSRNSTMEDMHVYLQRLGLAESLPKLPILHVAGSKGKGSTCAFAEAVLCKQGVRTALFTSPHLVRVNERIRLNGEPLTDKQWSLHFWTVWNRLQDRRSTGLQRSADASLLKSSSSSAASGASTTRIAEPDVTPGYFRLLTLLAFWVAISEQVDVLILEVGVGGRFDATNVVPKPVACAITTLDLEHTDLLGSTIEEIAWEKGGIIKPGTPCFLEPQPTEYQSSILRVLRACVLDAPGAELHVVKPLPGDVKLGIAGDFQAMNAALALALVREYNVYSRRCSRSTIEGSVAEGIVQDPRAESCVAWVDVYPYISTDRPAVSQGLQSCTWPGRCQRLDWGSSCSFFIDGAHTVESIQSAVAWFKGQAL-----SRPRALLFYCGEGKTAPELLAHL-------VTLGSATSSTPYSKFSLAFFCPVDCAKPTLSRARSARALLLEHNEGFSHARQLDQSVLHALCDAVENMNAQNSSNTPSLLWQQTLRDTWRILSAYRL--FAQDKESENESISGIGFSDSNAEVREGGGHGGRVTKWSSWIELADQQTRSKVFPSVAAAMGEIDAMTNIEPFDVLVTGSLYLVGNVLNYVERIPSPFSNSKK 617
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02010.1 ID=NO12G02010.1|Name=NO12G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2976bp TGAGCGCCGTGCGTGAGGTCTCTGAATTATTGGGTGAAGGAAATAGAAGA AGTGTCAGACGCCCTCGCGGAAATTGCTCGACGTTTTATACAGTTGAGAT TTAAGAATAAGGCAGGGTCTGCATTTCACCCTTTGATTATATTGTATAAT TTGTGGTCTTGTTTGCTCGGTAGTCTTGACTCCGAATGAGGAAAATCGCT GAAGTTGTGGTGTGTGTTGGCGAAGATGGCGAGATGATTTGAAGGCCAGC TCACCACTCAAGACGTCCCTCCCCCACACATAAATGTATAGTATAAGCCC TGTGACAGCGCGTGAGTGGAGCCCAGTTACGGCGCCTGAGTGGAGCTCAC CGTTGTCATGGGGCCACTAAACATGGTCCAGCCAGACCAGGGCTATGCAA GGTCCTTGGAAGCTCTAAATTCGACGCAGCTGCATGGAGATTCTCTGCGC CGGGCCTACAGCGCTCGTCGCGATACCGTCAGAGCCATGAACGTCTACTT GCACCGGTTGGACCTTGCGAAGGGCGTGGCGAGTCTTCCGACCTTGCACG TGACAGGGAGCAAGGGCAAAGGATCCACCTGTGCGTTCGTCGAGTCAGTA TTGCGGCGGCAAGGCGTGCGGACGGTGCTCTTTACCTCACCACATTTGGT GCGAGTCAATGAACGGATCCGCTTGGACGGGCAGCCATTGACAGACAAGC AATGGTCGCATCACTTCTGGGCCATGTGGAATCGTCTTCAGGAGACCGCG CCACCACCGCCAACACATCAGTCAAAACGCCCAAGCAGCACTTCGCCATA TGCCATCCCATTGGCCATCAACACCTACGAAGCCGAGCCTGAGGCGGTCC CCGGTTACTTTCGGTTTTTGACACTCCTATGTTTTTGGGTCGCGCTGCAG GAGAAGTCGGACGCACTTATCCTTGAGGTCGGCGTAGGCGGCCGTTTTGA TGCCACCAATGTGGTACCTCGGCCTGTGGCATGCGCCATTACCACGATGG ACCTTGAGCACACGGATCTGCTTGGTGGCAGCATTGAGGAAATAGCTTGG GAAAAAGGCGGCATCATCAAGTCTGGAGTTCCCTGCTTTGTTGGGCCACA ACCAACACGTTACACAGCCTCAACCTTGCGTGTGCTGCGTACTTGTGCCC TAGAGTCCCCCGGCGCGGCACTATATCTTGTGAAACCTTTACCGACCGAG ATAAATCTGGGCATTGCAGGCGATTTTCAAGCCATGAACGCAGCCCTTGC CCTGGCCTTGGTCCAACAGTACCACATTTCCCAATCCCACTCCCACCAAC CACCAGGCCAAGTAGGCCTCGTAGGAGATGCGGATAAAGCGCTCGACGAA AAGGGAGCTGCAGCGTGGGTGGACGTTGCCCCCTACTTGCTGGCTAACGA GCCCACCGTAAGGGAGGGGCTTGAGGCCTGCGCGTGGCCTGGTCGGTGCC AGCGCCTGGATTGGGGTCCATGCTGTCGCTTTTACATCGATGGAGCGCAT ACAGAGGAGAGCATGCGGACTGCGGTTGAATGGTTTGATGGTCAGGTCTC ACAAAAAAAGAGAGGGAAACGTCGCCGTGTCCTTTTATTTAATTGCGGGG AAGAAAAAAATGTTCCCGACCTATTGTCCTATCTGCTGAATCACAGAGCG ACAGCAGTAGTAATAGCATCAGTATCAGAAGAGCCAGCTTTGTTACGTTT TGATACCGTCCTCTTTTGCCCGGTGGCCAGTGTAAAGCCTACCCTGGCTC ATGCTCGCGCCGCGCGTATGCTTCTGCTGGAAGAAGGGGAGGAGGGGTCC TACGCCCGGCAGCTGGACCAAACAATGCTTCATTCTTTGTGCGAGGCGCT GGATGCAAAGGCAGAGGTGCAATTAGAGGGTTTACAGTGGCAACAGGCCT TGCGCGATACCTGGCGGATCTTGCATGCGTACCACTTGAAAAAGTGGGCG CAGGAGCAGAAGCAGAAGCAGGAGCAGGAGGAGGAGCAGGAGCAGGAGCA GGAGACGGACTGGATCGATCGAGCCGACCGACAAACGCGAACGGCTGTAT TTCCTTCTGTGGCGGCGGTGTTGGAAGAAATCAAAGACATGCTGGCTGTT GAGCCTCTGGAGGTGCTGGTGACGGGGTCGTTGTATCTGGTTGGGAATGT GCTGGGACAGCTCGAGGAAGAAAGTTCGCCATCTTCTCCCAGCTCTCGAA CATAAAAATCAATGCATGAGCATGAATAGAAGTGAGGACATGCCGGTTAT GAAGCGTTGAAGGTGTTGTTGACGGAGACGTGTTCGACAGGGAGTAAGTG CATGCTGGGCCGGCTCACTGAAACACTTCTTCCCCTCCAACGCTAAAAAT TATCTCGCCGACCCTTGACCGACCGCTTGATAAAGGTCAATAACGTATGA TATGTGCATCAGAACGGAATTTGGGGAAACGTTGGGAGTGTCTGAGCGGG GGACAGCATTGTGGGCCCAAAAAGGCACAGTTTCGAGGCGTCGCTGGGGC GCGTAGTAACTGTCGAGGATGAAGCTCGGCAAAGCTGGGGTAGCATACAC GAAGAATTGGGGTAGTAGCCGGTGCTACGGGGTCTGTGAATTATGTGCTA TATGACAGCCTCGTAAATGTGTGGCTAGGAATCGGCATCGGGAAGTTGCG CGGAGACGAGGGAGGGGATATCAGCAGATGTGCAATTTCTTGTCTGTTAG GGTTTATCTCTTCCAAGGAACTCTTCCCTTTATGTTTTTACATGTTTCAA TTCCAAAGCCCCTCTACCTTTAACATCAAAAATCCTCTCTGGGTGCGGAC TCAAGTCGTCAGTACAATTACAATGACTTTTAATGAGTAAAAAGCGTCGA GCGTAATGGTTTCATTAACACCCTAACTCTCCTCCTTTACCTAGAACCTG AACACGAGGAAGGAATTGAGATAAAATTAACTAAAGAAATGCAATTAGAG ACAAACCTGCTAAAGCAATAATTATT back to topprotein sequence of NO12G02010.1 >NO12G02010.1-protein ID=NO12G02010.1-protein|Name=NO12G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=616bp MGPLNMVQPDQGYARSLEALNSTQLHGDSLRRAYSARRDTVRAMNVYLHR LDLAKGVASLPTLHVTGSKGKGSTCAFVESVLRRQGVRTVLFTSPHLVRV NERIRLDGQPLTDKQWSHHFWAMWNRLQETAPPPPTHQSKRPSSTSPYAI PLAINTYEAEPEAVPGYFRFLTLLCFWVALQEKSDALILEVGVGGRFDAT NVVPRPVACAITTMDLEHTDLLGGSIEEIAWEKGGIIKSGVPCFVGPQPT RYTASTLRVLRTCALESPGAALYLVKPLPTEINLGIAGDFQAMNAALALA LVQQYHISQSHSHQPPGQVGLVGDADKALDEKGAAAWVDVAPYLLANEPT VREGLEACAWPGRCQRLDWGPCCRFYIDGAHTEESMRTAVEWFDGQVSQK KRGKRRRVLLFNCGEEKNVPDLLSYLLNHRATAVVIASVSEEPALLRFDT VLFCPVASVKPTLAHARAARMLLLEEGEEGSYARQLDQTMLHSLCEALDA KAEVQLEGLQWQQALRDTWRILHAYHLKKWAQEQKQKQEQEEEQEQEQET DWIDRADRQTRTAVFPSVAAVLEEIKDMLAVEPLEVLVTGSLYLVGNVLG QLEEESSPSSPSSRT* back to topmRNA from alignment at chr12:569526..572626- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02010.1 ID=NO12G02010.1|Name=NO12G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=3101bp|location=Sequence derived from alignment at chr12:569526..572626- (Nannochloropsis oceanica) TGAGCGCCGTGCGTGAGGTCTCTGAATTATTGGGTGAAGGAAATAGAAGA
AGTGTCAGACGCCCTCGCGGAAATTGCTCGACGTTTTATACAGTTGAGAT
TTAAGAATAAGGCAGGGTCTGCATTTCACCCTTTGATTATATTGTATAAT
TTGTGGTCTTGTTTGCTCGGTAGTCTTGACTCCGAATGAGGAAAATCGCT
GAAGTTGTGGTGTGTGTTGGCGAAGATGGCGAGATGATTTGAAGGCCAGC
TCACCACTCAAGACGTCCCTCCCCCACACATAAATGTATAGTATAAGCCC
TGTGACAGCGCGTGAGTGGAGCCCAGTTACGGCGCCTGAGTGGAGCTCAC
CGTTGTCATGGTAAAGGAGACAAAGAGAAAGGAAGGCAATTTTTCCTTCC
CGCAAGCCACACAGGCTGCCACTGGCAGTGTGGCACGGCTTGCCAACCTC
CTCACCCCTCCCTCCCCTTTCGTTTACAACAATAGGGGCCACTAAACATG
GTCCAGCCAGACCAGGGCTATGCAAGGTCCTTGGAAGCTCTAAATTCGAC
GCAGCTGCATGGAGATTCTCTGCGCCGGGCCTACAGCGCTCGTCGCGATA
CCGTCAGAGCCATGAACGTCTACTTGCACCGGTTGGACCTTGCGAAGGGC
GTGGCGAGTCTTCCGACCTTGCACGTGACAGGGAGCAAGGGCAAAGGATC
CACCTGTGCGTTCGTCGAGTCAGTATTGCGGCGGCAAGGCGTGCGGACGG
TGCTCTTTACCTCACCACATTTGGTGCGAGTCAATGAACGGATCCGCTTG
GACGGGCAGCCATTGACAGACAAGCAATGGTCGCATCACTTCTGGGCCAT
GTGGAATCGTCTTCAGGAGACCGCGCCACCACCGCCAACACATCAGTCAA
AACGCCCAAGCAGCACTTCGCCATATGCCATCCCATTGGCCATCAACACC
TACGAAGCCGAGCCTGAGGCGGTCCCCGGTTACTTTCGGTTTTTGACACT
CCTATGTTTTTGGGTCGCGCTGCAGGAGAAGTCGGACGCACTTATCCTTG
AGGTCGGCGTAGGCGGCCGTTTTGATGCCACCAATGTGGTACCTCGGCCT
GTGGCATGCGCCATTACCACGATGGACCTTGAGCACACGGATCTGCTTGG
TGGCAGCATTGAGGAAATAGCTTGGGAAAAAGGCGGCATCATCAAGTCTG
GAGTTCCCTGCTTTGTTGGGCCACAACCAACACGTTACACAGCCTCAACC
TTGCGTGTGCTGCGTACTTGTGCCCTAGAGTCCCCCGGCGCGGCACTATA
TCTTGTGAAACCTTTACCGACCGAGATAAATCTGGGCATTGCAGGCGATT
TTCAAGCCATGAACGCAGCCCTTGCCCTGGCCTTGGTCCAACAGTACCAC
ATTTCCCAATCCCACTCCCACCAACCACCAGGCCAAGTAGGCCTCGTAGG
AGATGCGGATAAAGCGCTCGACGAAAAGGGAGCTGCAGCGTGGGTGGACG
TTGCCCCCTACTTGCTGGCTAACGAGCCCACCGTAAGGGAGGGGCTTGAG
GCCTGCGCGTGGCCTGGTCGGTGCCAGCGCCTGGATTGGGGTCCATGCTG
TCGCTTTTACATCGATGGAGCGCATACAGAGGAGAGCATGCGGACTGCGG
TTGAATGGTTTGATGGTCAGGTCTCACAAAAAAAGAGAGGGAAACGTCGC
CGTGTCCTTTTATTTAATTGCGGGGAAGAAAAAAATGTTCCCGACCTATT
GTCCTATCTGCTGAATCACAGAGCGACAGCAGTAGTAATAGCATCAGTAT
CAGAAGAGCCAGCTTTGTTACGTTTTGATACCGTCCTCTTTTGCCCGGTG
GCCAGTGTAAAGCCTACCCTGGCTCATGCTCGCGCCGCGCGTATGCTTCT
GCTGGAAGAAGGGGAGGAGGGGTCCTACGCCCGGCAGCTGGACCAAACAA
TGCTTCATTCTTTGTGCGAGGCGCTGGATGCAAAGGCAGAGGTGCAATTA
GAGGGTTTACAGTGGCAACAGGCCTTGCGCGATACCTGGCGGATCTTGCA
TGCGTACCACTTGAAAAAGTGGGCGCAGGAGCAGAAGCAGAAGCAGGAGC
AGGAGGAGGAGCAGGAGCAGGAGCAGGAGACGGACTGGATCGATCGAGCC
GACCGACAAACGCGAACGGCTGTATTTCCTTCTGTGGCGGCGGTGTTGGA
AGAAATCAAAGACATGCTGGCTGTTGAGCCTCTGGAGGTGCTGGTGACGG
GGTCGTTGTATCTGGTTGGGAATGTGCTGGGACAGCTCGAGGAAGAAAGT
TCGCCATCTTCTCCCAGCTCTCGAACATAAAAATCAATGCATGAGCATGA
ATAGAAGTGAGGACATGCCGGTTATGAAGCGTTGAAGGTGTTGTTGACGG
AGACGTGTTCGACAGGGAGTAAGTGCATGCTGGGCCGGCTCACTGAAACA
CTTCTTCCCCTCCAACGCTAAAAATTATCTCGCCGACCCTTGACCGACCG
CTTGATAAAGGTCAATAACGTATGATATGTGCATCAGAACGGAATTTGGG
GAAACGTTGGGAGTGTCTGAGCGGGGGACAGCATTGTGGGCCCAAAAAGG
CACAGTTTCGAGGCGTCGCTGGGGCGCGTAGTAACTGTCGAGGATGAAGC
TCGGCAAAGCTGGGGTAGCATACACGAAGAATTGGGGTAGTAGCCGGTGC
TACGGGGTCTGTGAATTATGTGCTATATGACAGCCTCGTAAATGTGTGGC
TAGGAATCGGCATCGGGAAGTTGCGCGGAGACGAGGGAGGGGATATCAGC
AGATGTGCAATTTCTTGTCTGTTAGGGTTTATCTCTTCCAAGGAACTCTT
CCCTTTATGTTTTTACATGTTTCAATTCCAAAGCCCCTCTACCTTTAACA
TCAAAAATCCTCTCTGGGTGCGGACTCAAGTCGTCAGTACAATTACAATG
ACTTTTAATGAGTAAAAAGCGTCGAGCGTAATGGTTTCATTAACACCCTA
ACTCTCCTCCTTTACCTAGAACCTGAACACGAGGAAGGAATTGAGATAAA
ATTAACTAAAGAAATGCAATTAGAGACAAACCTGCTAAAGCAATAATTAT
T back to topCoding sequence (CDS) from alignment at chr12:569526..572626- >NO12G02010.1 ID=NO12G02010.1|Name=NO12G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1848bp|location=Sequence derived from alignment at chr12:569526..572626- (Nannochloropsis oceanica) ATGGGGCCACTAAACATGGTCCAGCCAGACCAGGGCTATGCAAGGTCCTT GGAAGCTCTAAATTCGACGCAGCTGCATGGAGATTCTCTGCGCCGGGCCT ACAGCGCTCGTCGCGATACCGTCAGAGCCATGAACGTCTACTTGCACCGG TTGGACCTTGCGAAGGGCGTGGCGAGTCTTCCGACCTTGCACGTGACAGG GAGCAAGGGCAAAGGATCCACCTGTGCGTTCGTCGAGTCAGTATTGCGGC GGCAAGGCGTGCGGACGGTGCTCTTTACCTCACCACATTTGGTGCGAGTC AATGAACGGATCCGCTTGGACGGGCAGCCATTGACAGACAAGCAATGGTC GCATCACTTCTGGGCCATGTGGAATCGTCTTCAGGAGACCGCGCCACCAC CGCCAACACATCAGTCAAAACGCCCAAGCAGCACTTCGCCATATGCCATC CCATTGGCCATCAACACCTACGAAGCCGAGCCTGAGGCGGTCCCCGGTTA CTTTCGGTTTTTGACACTCCTATGTTTTTGGGTCGCGCTGCAGGAGAAGT CGGACGCACTTATCCTTGAGGTCGGCGTAGGCGGCCGTTTTGATGCCACC AATGTGGTACCTCGGCCTGTGGCATGCGCCATTACCACGATGGACCTTGA GCACACGGATCTGCTTGGTGGCAGCATTGAGGAAATAGCTTGGGAAAAAG GCGGCATCATCAAGTCTGGAGTTCCCTGCTTTGTTGGGCCACAACCAACA CGTTACACAGCCTCAACCTTGCGTGTGCTGCGTACTTGTGCCCTAGAGTC CCCCGGCGCGGCACTATATCTTGTGAAACCTTTACCGACCGAGATAAATC TGGGCATTGCAGGCGATTTTCAAGCCATGAACGCAGCCCTTGCCCTGGCC TTGGTCCAACAGTACCACATTTCCCAATCCCACTCCCACCAACCACCAGG CCAAGTAGGCCTCGTAGGAGATGCGGATAAAGCGCTCGACGAAAAGGGAG CTGCAGCGTGGGTGGACGTTGCCCCCTACTTGCTGGCTAACGAGCCCACC GTAAGGGAGGGGCTTGAGGCCTGCGCGTGGCCTGGTCGGTGCCAGCGCCT GGATTGGGGTCCATGCTGTCGCTTTTACATCGATGGAGCGCATACAGAGG AGAGCATGCGGACTGCGGTTGAATGGTTTGATGGTCAGGTCTCACAAAAA AAGAGAGGGAAACGTCGCCGTGTCCTTTTATTTAATTGCGGGGAAGAAAA AAATGTTCCCGACCTATTGTCCTATCTGCTGAATCACAGAGCGACAGCAG TAGTAATAGCATCAGTATCAGAAGAGCCAGCTTTGTTACGTTTTGATACC GTCCTCTTTTGCCCGGTGGCCAGTGTAAAGCCTACCCTGGCTCATGCTCG CGCCGCGCGTATGCTTCTGCTGGAAGAAGGGGAGGAGGGGTCCTACGCCC GGCAGCTGGACCAAACAATGCTTCATTCTTTGTGCGAGGCGCTGGATGCA AAGGCAGAGGTGCAATTAGAGGGTTTACAGTGGCAACAGGCCTTGCGCGA TACCTGGCGGATCTTGCATGCGTACCACTTGAAAAAGTGGGCGCAGGAGC AGAAGCAGAAGCAGGAGCAGGAGGAGGAGCAGGAGCAGGAGCAGGAGACG GACTGGATCGATCGAGCCGACCGACAAACGCGAACGGCTGTATTTCCTTC TGTGGCGGCGGTGTTGGAAGAAATCAAAGACATGCTGGCTGTTGAGCCTC TGGAGGTGCTGGTGACGGGGTCGTTGTATCTGGTTGGGAATGTGCTGGGA CAGCTCGAGGAAGAAAGTTCGCCATCTTCTCCCAGCTCTCGAACATAA back to top
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