NO12G01900.1, NO12G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01900.1
Unique NameNO12G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length531
Alignment locationchr12:545245..545874 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:545245..545874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01900.1 vs.
Match: EWM25853.1 (mRNA splicing factor, Cwf18 [Nannochloropsis gaditana])

HSP 1 Score: 145.6 bits (366), Expect = 1.500e-31
Identity = 93/163 (57.06%), Postives = 114/163 (69.94%), Query Frame = 0 
Query:    1 MATTAKKILKFRNYRPADTSLVGPQTATS-GEGNAAVAFKASEEPLADRREGRQQAGADQQQKRHEPDHQQAQLPHLRKEEEDAIQRELRRYEEEHGSGGQLNVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQEAEDEGSSSSESDSGSSVSEE 163
            MATT+KK LKFRNYRPAD SLV   TATS G G      K+ E+  A      +        + ++ + Q  +   ++K+EEDAIQREL+R+E EHGSGGQLNVAPRK NWDLKRDVAKK+AKLNRLTQKAI+E+L+E+LAQEAE EGS+S   D  S   +E
Sbjct:    1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQEAE-EGSTSENDDDMSKEGDE 162
The following BLAST results are available for this feature:
BLAST of NO12G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25853.11.500e-3157.06mRNA splicing factor, Cwf18 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01900NO12G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01900.1NO12G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01900.1.cds1NO12G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01900.1.cds2NO12G01900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01900.1 ID=NO12G01900.1|Name=NO12G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=531bp
ATGGCTACGACCGCCAAGAAGATCTTGAAATTCCGGAACTACAGACCAGC
CGATACCTCATTGGTAGGCCCACAGACCGCCACGTCGGGGGAGGGAAATG
CTGCAGTTGCATTCAAAGCCTCCGAAGAGCCTCTGGCAGATCGTCGCGAG
GGCCGCCAGCAAGCTGGCGCTGATCAACAACAGAAGCGTCACGAGCCCGA
CCATCAGCAAGCGCAGCTACCACACCTTAGAAAAGAGGAGGAGGACGCTA
TTCAACGGGAATTGCGACGGTACGAGGAGGAGCATGGAAGTGGGGGCCAG
CTAAATGTAGCGCCGCGAAAGCCCAATTGGGATCTAAAGCGGGATGTGGC
GAAAAAGGTGGCGAAGTTGAATCGACTCACCCAAAAAGCTATCGTAGAGT
TGCTCCGAGAGAGGTTGGCTCAGGAGGCAGAGGATGAGGGCAGCAGTAGT
AGTGAAAGTGATAGTGGCAGCAGTGTAAGTGAAGAAGAGAGCGAGGAAAA
AGACCAGGAAGGGAAGAGCGACAAAGAGTAA
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protein sequence of NO12G01900.1

>NO12G01900.1-protein ID=NO12G01900.1-protein|Name=NO12G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MATTAKKILKFRNYRPADTSLVGPQTATSGEGNAAVAFKASEEPLADRRE
GRQQAGADQQQKRHEPDHQQAQLPHLRKEEEDAIQRELRRYEEEHGSGGQ
LNVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQEAEDEGSSS
SESDSGSSVSEEESEEKDQEGKSDKE*
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mRNA from alignment at chr12:545245..545874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01900.1 ID=NO12G01900.1|Name=NO12G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=630bp|location=Sequence derived from alignment at chr12:545245..545874- (Nannochloropsis oceanica)
ATGGCTACGACCGCCAAGAAGGTGACTTGGTCCATTCCCAATTCCAACAT
GTCCAACTTCCTCCCTCCTCCTCGAACAAAGCCACTCTCACACCCTTCTC
ATCAACCCTCCCCCACATAGATCTTGAAATTCCGGAACTACAGACCAGCC
GATACCTCATTGGTAGGCCCACAGACCGCCACGTCGGGGGAGGGAAATGC
TGCAGTTGCATTCAAAGCCTCCGAAGAGCCTCTGGCAGATCGTCGCGAGG
GCCGCCAGCAAGCTGGCGCTGATCAACAACAGAAGCGTCACGAGCCCGAC
CATCAGCAAGCGCAGCTACCACACCTTAGAAAAGAGGAGGAGGACGCTAT
TCAACGGGAATTGCGACGGTACGAGGAGGAGCATGGAAGTGGGGGCCAGC
TAAATGTAGCGCCGCGAAAGCCCAATTGGGATCTAAAGCGGGATGTGGCG
AAAAAGGTGGCGAAGTTGAATCGACTCACCCAAAAAGCTATCGTAGAGTT
GCTCCGAGAGAGGTTGGCTCAGGAGGCAGAGGATGAGGGCAGCAGTAGTA
GTGAAAGTGATAGTGGCAGCAGTGTAAGTGAAGAAGAGAGCGAGGAAAAA
GACCAGGAAGGGAAGAGCGACAAAGAGTAA
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Coding sequence (CDS) from alignment at chr12:545245..545874-

>NO12G01900.1 ID=NO12G01900.1|Name=NO12G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr12:545245..545874- (Nannochloropsis oceanica)
ATGGCTACGACCGCCAAGAAGATCTTGAAATTCCGGAACTACAGACCAGC
CGATACCTCATTGGTAGGCCCACAGACCGCCACGTCGGGGGAGGGAAATG
CTGCAGTTGCATTCAAAGCCTCCGAAGAGCCTCTGGCAGATCGTCGCGAG
GGCCGCCAGCAAGCTGGCGCTGATCAACAACAGAAGCGTCACGAGCCCGA
CCATCAGCAAGCGCAGCTACCACACCTTAGAAAAGAGGAGGAGGACGCTA
TTCAACGGGAATTGCGACGGTACGAGGAGGAGCATGGAAGTGGGGGCCAG
CTAAATGTAGCGCCGCGAAAGCCCAATTGGGATCTAAAGCGGGATGTGGC
GAAAAAGGTGGCGAAGTTGAATCGACTCACCCAAAAAGCTATCGTAGAGT
TGCTCCGAGAGAGGTTGGCTCAGGAGGCAGAGGATGAGGGCAGCAGTAGT
AGTGAAAGTGATAGTGGCAGCAGTGTAAGTGAAGAAGAGAGCGAGGAAAA
AGACCAGGAAGGGAAGAGCGACAAAGAGTAA
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Synonyms
Publications