NO12G01890.1, NO12G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01890.1
Unique NameNO12G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1640
Alignment locationchr12:543235..545211 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:543235..545211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01890.1 vs.
Match: EWM25811.1 (radical sam cfr family [Nannochloropsis gaditana])

HSP 1 Score: 632.5 bits (1630), Expect = 1.100e-177
Identity = 326/456 (71.49%), Postives = 371/456 (81.36%), Query Frame = 0 
Query:   11 RRRAARA-GIVAMLVGVLGLVYLRPVVASLSGTSRRGKLAFFGA-GFSALRRQHRLTKVTGLTPTTGAALVQTQAAAVIVAAEEAKN---NSLPKKLMDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAKEI 462
            RR   R   ++ ML+G LG   +RP       T+ R   AFF + G  ++RR           P     L +   A  + AA E  N   + LP  L DIY L+E+E+  FLQ  L QP+YRAKQV+AWLYQRGA SFE M+DLPK+LR GLAEHF LGCLE+AFEQVSKDGT+KRAYRLADGQLIE+VLMPYEDGRRTACISSQAGCAMGC FCQTGQMGFARQLT++EIF+QAL FSRDL K G  RLSNVVFMGEGEPLNNR+ VF AVRRLN+DL IGARHITVSTVGLAPRIRDLAD VDD +GEG LLSQIK+AVSLHAT D ERTAIMPVN+RFP+++LM+ACQYYVQRTNRR+SFEWALISGQNDSP+VA+ELG+LL+PLKGKCHVNVINVNPTTGF+G+PG KA+M+RFLNILNEDWGIPATMRVRRG+DINAGCGQLKNELL +E+
Sbjct:   21 RRTLGRTFALLVMLIGALGSTVVRPRTV----TACRSSSAFFASTGVLSIRRWQSAVPGRAYPP-----LPKKAKAVAVPAAAETDNTVVSRLPSALTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGG-ERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTREL 466
The following BLAST results are available for this feature:
BLAST of NO12G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25811.11.100e-17771.49radical sam cfr family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01890NO12G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01890.1NO12G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01890.1.cds1NO12G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01890.1.cds2NO12G01890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01890.1 ID=NO12G01890.1|Name=NO12G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp
ACAGGCCTACGGGGACAGGCAGGCGGGGAACTGCTTCTTCTCTAGTGTTG
TCACCGGCCGCTCAATGGCTCCAGTGCAGGCAACACAGCAGCCAAGAAGA
AGAGCTGCGAGAGCGGGCATAGTAGCCATGTTAGTGGGCGTCCTCGGCCT
GGTATACCTGCGCCCTGTGGTGGCCTCGTTGTCAGGAACATCGCGGCGTG
GCAAGTTGGCCTTTTTTGGAGCCGGGTTTAGCGCTCTGCGCCGTCAGCAT
CGGCTCACCAAGGTTACAGGCCTGACCCCGACGACGGGCGCCGCGCTCGT
GCAAACGCAGGCAGCGGCCGTGATCGTCGCAGCAGAGGAAGCCAAAAACA
ATAGCCTTCCAAAGAAGCTGATGGACATTTACACGCTGACGGAGAAGGAG
ATTGAGGATTTTTTGCAGACGCAGCTGAAGCAGCCTCGATACCGAGCCAA
GCAAGTGTATGCGTGGCTGTATCAACGCGGGGCCACCTCGTTCGAGGTAA
TGAACGACTTGCCCAAGGCGTTGCGTGCAGGCCTCGCAGAGCATTTTTCT
TTGGGCTGCTTAGAGATGGCTTTTGAGCAGGTTAGCAAGGATGGGACAAT
TAAACGTGCATATCGCTTGGCGGACGGTCAGTTGATTGAGTCGGTTTTGA
TGCCTTATGAGGATGGACGACGCACGGCCTGCATTTCGAGCCAGGCGGGA
TGTGCGATGGGCTGTGCATTTTGTCAAACGGGGCAGATGGGTTTTGCACG
GCAGTTGACCGACGCAGAAATTTTTCAGCAGGCGCTGTTTTTCTCCCGGG
ACTTAGCGAAGGAAGGGTTGTATCGACTATCAAATGTGGTGTTTATGGGG
GAGGGAGAGCCTCTGAATAACAGAAAAATGGTTTTCAGTGCGGTGCGTCG
GTTGAATTCTGATTTGAAGATTGGGGCGAGGCATATCACTGTGTCGACGG
TGGGTTTGGCTCCGAGGATCAGGGACTTGGCGGATACAGTTGATGATCTT
CAGGGGGAGGGGGGGTTGCTCTCGCAGATAAAGTTGGCTGTATCTTTGCA
TGCCACCACGGATAGGGAGCGCACGGCGATTATGCCTGTAAATAAGCGAT
TTCCAGTCGCCGACTTGATGAGCGCGTGTCAGTATTATGTGCAGAGGACG
AATAGGAGGATTAGCTTCGAGTGGGCTTTGATTAGTGGCCAGAACGATAG
CCCCAAGGTGGCTGATGAGTTGGGGCAATTGCTGGCGCCGCTGAAAGGGA
AGTGTCACGTAAATGTGATAAATGTTAATCCAACGACGGGATTTGATGGG
AAGCCGGGGGGGAAGGCGTCGATGGAGCGATTCTTGAATATCTTGAATGA
AGATTGGGGGATTCCGGCGACCATGAGGGTGAGGCGCGGAATCGACATCA
ATGCCGGATGTGGCCAGCTGAAGAATGAATTACTGGCCAAGGAGATCTTG
GAGGGAGGGGGTAGGGCGAACCCAGGTGTCCGGACAATATTGGGGAAAGT
GGTGGTGATGGAAAACAAGGGGTCGACGGAAGAAGAGTAAGGAGAAGGAG
TGGGAGTACATGGATAGGCATAAGTATTGAAAGGAAATTGAAATAAAGAC
ATTGAAGAGAGGGGAACGAGATGAAGGCATTTGAACATGT
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protein sequence of NO12G01890.1

>NO12G01890.1-protein ID=NO12G01890.1-protein|Name=NO12G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MAPVQATQQPRRRAARAGIVAMLVGVLGLVYLRPVVASLSGTSRRGKLAF
FGAGFSALRRQHRLTKVTGLTPTTGAALVQTQAAAVIVAAEEAKNNSLPK
KLMDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLP
KALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYED
GRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKE
GLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAP
RIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVAD
LMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVN
VINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCG
QLKNELLAKEILEGGGRANPGVRTILGKVVVMENKGSTEEE*
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mRNA from alignment at chr12:543235..545211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01890.1 ID=NO12G01890.1|Name=NO12G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1977bp|location=Sequence derived from alignment at chr12:543235..545211+ (Nannochloropsis oceanica)
ACAGGCCTACGGGGACAGGCAGGCGGGGAACTGCTTCTTCTCTAGTGTTG
TCACCGGCCGCTCAATGGCTCCAGTGCAGGCAACACAGCAGCCAAGAAGA
AGAGCTGCGAGAGCGGGCATAGTAGCCATGTTAGTGGGCGTCCTCGGCCT
GGTATACCTGCGCCCTGTGGTGGCCTCGTTGTCAGGAACATCGCGGCGTG
GCAAGTTGGCCTTTTTTGGAGCCGGGTTTAGCGCTCTGCGCCGTCAGCAT
CGGCTCACCAAGGTTACAGGCCTGACCCCGACGACGGGCGCCGCGCTCGT
GCAAACGCAGGCAGCGGCCGTGATCGTCGCAGCAGAGGAAGCCAAAAACA
ATAGCCTTCCAAAGAAGCTGATGGACATTTACACGCTGACGGAGAAGGAG
ATTGAGGATTTTTTGCAGACGCAGCTGAAGCAGCCTCGATACCGAGCCAA
GCAAGTGTATGCGTGGCTGTATCAACGCGGGGCCACCTCGTTCGAGGTAA
TGAACGACTTGCCCAAGGCGTTGCGTGCAGGCCTCGCAGAGCATTTTTCT
TTGGGCTGCTTAGAGATGGCTTTTGAGCAGGTTAGCAAGGATGGGACAAT
TAAACGTGCATATCGCTTGGCGGACGGTCAGTTGATTGAGTCGGTTTTGA
TGCCTTATGAGGATGGACGACGCACGGCCTGCATTTCGAGCCAGGCGGGA
TGTGCGATGGGCTGTGCATTTTGTCAAACGGGGCAGATGGGTTTTGCACG
GCAGTTGACCGACGCAGAAATTTTTCAGCAGGCGCTGTTTTTCTCCCGGG
ACTTAGCGAAGGAAGGGTTGTATCGACTATCAAATGTGGTGTTTATGGGG
GAGGGAGAGCCTCTGAATAACAGAAAAATGGTTTTCAGTGCGGTGCGTCG
GTTGAATTCTGATTTGAAGATTGGGGCGAGGCATATCACTGTGTCGACGG
TGGGTTTGGCTCCGAGGATCAGGGACTTGGCGGATACAGTTGATGATCTT
CAGGGGGAGGGGGGGTTGCTCTCGCAGATAAAGTTGGCTGTATCTTTGCA
TGCCACCACGGATAGGGAGCGCACGGCGATTATGCCTGTAAATAAGCGAT
TTCCAGTCGCCGACTTGATGAGCGCGTGTCAGTATTATGTGCAGAGGACG
AATAGGAGGATTAGCTTCGAGTGGGCTTTGATTAGTGGCCAGAACGATAG
CCCCAAGGTGGCTGATGAGTTGGGGCAATTGCTGGCGCCGCTGAAAGGGA
AGTGTCACGTAAATGTGATAAATGTTAATCCAACGACGGGATTTGATGGG
AAGCCGGGGGGGAAGGCGTCGATGGAGCGATTCTTGAATATCTTGAATGA
AGATTGGGGGATTCCGGCGACCATGAGGGTAAGGAGAAAGGTATATGCGA
GGTTCAAACCGGGGTCTTACTCTCTCCCTTTTTTGTTCGTACTTGTGCCA
TACCTGCGAGGCTTTGTTTTCCGTGAGATATGTCGGAATAACTTGAATGA
GGATTGGGGGGGTTCTGGCGACCAGGAGGGTGAGGAGGAGGAGAGGGATT
TCCTGGGCTCAATCTTCCCTTTCTTGTATATGACATTTCTGGCATCTCTA
TCATTCACCTCTCTATTGAGGAGGCCAGTGATCTTTGTCGGCTATTTCTC
GTGGCCGCCCTGAATTTTTTCATTGTTTCACGCCCTCCTTTCGACCTCTA
CACACATTTCTTCAGGTGAGGCGCGGAATCGACATCAATGCCGGATGTGG
CCAGCTGAAGAATGAATTACTGGCCAAGGAGATCTTGGAGGGAGGGGGTA
GGGCGAACCCAGGTGTCCGGACAATATTGGGGAAAGTGGTGGTGATGGAA
AACAAGGGGTCGACGGAAGAAGAGTAAGGAGAAGGAGTGGGAGTACATGG
ATAGGCATAAGTATTGAAAGGAAATTGAAATAAAGACATTGAAGAGAGGG
GAACGAGATGAAGGCATTTGAACATGT
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Coding sequence (CDS) from alignment at chr12:543235..545211+

>NO12G01890.1 ID=NO12G01890.1|Name=NO12G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr12:543235..545211+ (Nannochloropsis oceanica)
ATGGCTCCAGTGCAGGCAACACAGCAGCCAAGAAGAAGAGCTGCGAGAGC
GGGCATAGTAGCCATGTTAGTGGGCGTCCTCGGCCTGGTATACCTGCGCC
CTGTGGTGGCCTCGTTGTCAGGAACATCGCGGCGTGGCAAGTTGGCCTTT
TTTGGAGCCGGGTTTAGCGCTCTGCGCCGTCAGCATCGGCTCACCAAGGT
TACAGGCCTGACCCCGACGACGGGCGCCGCGCTCGTGCAAACGCAGGCAG
CGGCCGTGATCGTCGCAGCAGAGGAAGCCAAAAACAATAGCCTTCCAAAG
AAGCTGATGGACATTTACACGCTGACGGAGAAGGAGATTGAGGATTTTTT
GCAGACGCAGCTGAAGCAGCCTCGATACCGAGCCAAGCAAGTGTATGCGT
GGCTGTATCAACGCGGGGCCACCTCGTTCGAGGTAATGAACGACTTGCCC
AAGGCGTTGCGTGCAGGCCTCGCAGAGCATTTTTCTTTGGGCTGCTTAGA
GATGGCTTTTGAGCAGGTTAGCAAGGATGGGACAATTAAACGTGCATATC
GCTTGGCGGACGGTCAGTTGATTGAGTCGGTTTTGATGCCTTATGAGGAT
GGACGACGCACGGCCTGCATTTCGAGCCAGGCGGGATGTGCGATGGGCTG
TGCATTTTGTCAAACGGGGCAGATGGGTTTTGCACGGCAGTTGACCGACG
CAGAAATTTTTCAGCAGGCGCTGTTTTTCTCCCGGGACTTAGCGAAGGAA
GGGTTGTATCGACTATCAAATGTGGTGTTTATGGGGGAGGGAGAGCCTCT
GAATAACAGAAAAATGGTTTTCAGTGCGGTGCGTCGGTTGAATTCTGATT
TGAAGATTGGGGCGAGGCATATCACTGTGTCGACGGTGGGTTTGGCTCCG
AGGATCAGGGACTTGGCGGATACAGTTGATGATCTTCAGGGGGAGGGGGG
GTTGCTCTCGCAGATAAAGTTGGCTGTATCTTTGCATGCCACCACGGATA
GGGAGCGCACGGCGATTATGCCTGTAAATAAGCGATTTCCAGTCGCCGAC
TTGATGAGCGCGTGTCAGTATTATGTGCAGAGGACGAATAGGAGGATTAG
CTTCGAGTGGGCTTTGATTAGTGGCCAGAACGATAGCCCCAAGGTGGCTG
ATGAGTTGGGGCAATTGCTGGCGCCGCTGAAAGGGAAGTGTCACGTAAAT
GTGATAAATGTTAATCCAACGACGGGATTTGATGGGAAGCCGGGGGGGAA
GGCGTCGATGGAGCGATTCTTGAATATCTTGAATGAAGATTGGGGGATTC
CGGCGACCATGAGGGTGAGGCGCGGAATCGACATCAATGCCGGATGTGGC
CAGCTGAAGAATGAATTACTGGCCAAGGAGATCTTGGAGGGAGGGGGTAG
GGCGAACCCAGGTGTCCGGACAATATTGGGGAAAGTGGTGGTGATGGAAA
ACAAGGGGTCGACGGAAGAAGAGTAA
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Synonyms
Publications