NO12G01840.1, NO12G01840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01840.1
Unique NameNO12G01840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr12:531483..532838 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:531483..532838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01840.1 vs.
Match: CBJ28847.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.6 bits (301), Expect = 1.300e-23
Identity = 110/373 (29.49%), Postives = 184/373 (49.33%), Query Frame = 0 
Query:   73 ASLAFGREKRATMGKRMGGLVGEELDKDETFWGDGKW-NIDDAESEYSNESESGDEVDSDFSVSEDEAGAEGEDKEDEEAERNLTAREKRQQQQEIGARSKYKEPK----RKARLPPRIAALGAAAAEAALLSSMTPEEVKKLKEERKEATRRRREAALLVPVDRAKRATTQQKT---VATQEALAKMGKEEARKHVVKAPRVSKCMFTQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAIL-------KGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLRADSQYMPQEEDEGEGEDEDEDEGMGVPADDEEGG 431
            A+L+     R+T G+R+  L G++ + DETFWG G W   +D +SE+S+E +  D+ D DF+ SE E     E+ +D + E  L   E+  ++++ G    YKEPK    +K +  P   + G +A      S   P  + K                      R  RA+T+ KT   +  +E  AK  + + ++   +  +  K  FTQ+++L EA +TEQEN RW+L ++R+++E+      PK+   L +R+ SRRG    I FP+   +P +L        GG+G  +++     ++    ++ R+C ITG PA Y DPLT   YAN  AF+ +R   +Y        + + ++++ G    +    GG
Sbjct:   19 AALSVKLVARSTRGQRISELQGDDAEADETFWGQGAWQEEEDGDSEFSSEEDEPDKFDKDFNDSESE-----EEDDDGKEENRLRKNERAAKRKQPG--GVYKEPKTFAVKKRKTAPAGGSAGGSARGGGGSSGAAPGALSK----------------------RTVRASTKNKTEKSLEVREGEAKAREAQLKRSTPQRKKAIKGQFTQKQLLLEAIQTEQENMRWILKQRRLEDEAKEDEGRPKQHKILASRYASRRGCVDTIFFPDAYYLPPVLCQAPFSAGGGDGADQDK----GSKTAKSSSDRRCKITGAPAPYRDPLTGYYYANGAAFREVR--KRYGASARRRLKAQRQEQEAGEAASSGGAAGG 356
The following BLAST results are available for this feature:
BLAST of NO12G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28847.11.300e-2329.49conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01840NO12G01840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01840.1NO12G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01840.1.cds1NO12G01840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01840.1 ID=NO12G01840.1|Name=NO12G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ATGGCGCGGGCCACAAGGGCCAGTCTGGGTATAAACTCGGATGTTGACGT
GGAAGGCCTGAATGGAGATGGGGAAGAAGTTGAGGAGGAAGGGGACAGTG
AAGGGGAAGAGAATGGCAGCGAGGAGGACGACGATGCTGATGACGACGAG
GAGGAGGAAGATGACGACGACTATGAGGAAGAAGACAACGAGGAGGACAA
TCAGGTACCGCTAGAAGCAAGCTTGGCGTTCGGGCGTGAAAAACGTGCCA
CGATGGGGAAGCGGATGGGGGGCCTAGTTGGGGAGGAGCTGGATAAGGAC
GAGACGTTTTGGGGTGACGGGAAGTGGAATATTGATGATGCCGAGTCGGA
GTACTCAAATGAATCCGAATCAGGTGATGAAGTGGACTCGGATTTCTCGG
TCAGCGAGGACGAGGCGGGGGCAGAAGGGGAGGACAAGGAGGACGAGGAA
GCGGAACGCAACCTGACCGCGCGGGAAAAGCGTCAGCAGCAGCAAGAGAT
CGGGGCCCGAAGCAAGTACAAGGAACCCAAGCGCAAAGCTCGCCTACCGC
CCAGGATTGCTGCTCTTGGGGCTGCGGCTGCGGAGGCGGCCTTGCTTTCC
AGCATGACCCCGGAGGAGGTAAAGAAGCTGAAGGAGGAACGGAAGGAGGC
CACGCGTCGCCGGCGGGAAGCAGCCTTGCTGGTTCCCGTAGACCGAGCGA
AACGTGCGACGACTCAGCAGAAAACAGTGGCAACACAAGAGGCTTTGGCC
AAGATGGGGAAGGAAGAAGCGAGGAAACACGTTGTGAAAGCACCAAGGGT
GAGTAAGTGTATGTTTACCCAGGAGGAAATGCTGGCCGAGGCGTGTAAGA
CCGAGCAGGAGAATACCCGATGGCTGCTTGCGAGGAAGAGGATGCAAAAC
GAAAGCGACACCACGGCGCATGCTCCCAAAAGGCAAGTCAAGCTGGTTGC
ACGCTTCATCTCAAGGAGGGGAGGATATACCGTAATAAACTTTCCAGAAG
TGGACCTGATGCCGGCGATTTTGAAAGGGGGGGAAGGAGGGAAGGAGGAG
AGACGGAAGCGATTGAGGACAGAGGACGGGAGTGGGACAAATATCAGAAA
GTGTGTGATTACGGGATTGCCTGCCCGGTATCTTGATCCTCTCACCAGAC
AGCCATATGCGAATCGGGAGGCGTTCAAGTCGTTAAGGGCCGATTCGCAA
TATATGCCCCAGGAAGAGGACGAGGGAGAGGGCGAGGACGAAGACGAGGA
TGAAGGGATGGGGGTGCCGGCTGATGATGAGGAGGGAGGGGTGAAGGAAG
AGTTGAGAAAGGGGTCGTCGATGAGTTCGTCTCTAACGAATGAATCTTTT
GGGTAG
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protein sequence of NO12G01840.1

>NO12G01840.1-protein ID=NO12G01840.1-protein|Name=NO12G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MARATRASLGINSDVDVEGLNGDGEEVEEEGDSEGEENGSEEDDDADDDE
EEEDDDDYEEEDNEEDNQVPLEASLAFGREKRATMGKRMGGLVGEELDKD
ETFWGDGKWNIDDAESEYSNESESGDEVDSDFSVSEDEAGAEGEDKEDEE
AERNLTAREKRQQQQEIGARSKYKEPKRKARLPPRIAALGAAAAEAALLS
SMTPEEVKKLKEERKEATRRRREAALLVPVDRAKRATTQQKTVATQEALA
KMGKEEARKHVVKAPRVSKCMFTQEEMLAEACKTEQENTRWLLARKRMQN
ESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEE
RRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLRADSQ
YMPQEEDEGEGEDEDEDEGMGVPADDEEGGVKEELRKGSSMSSSLTNESF
G*
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mRNA from alignment at chr12:531483..532838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01840.1 ID=NO12G01840.1|Name=NO12G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at chr12:531483..532838+ (Nannochloropsis oceanica)
ATGGCGCGGGCCACAAGGGCCAGTCTGGGTATAAACTCGGATGTTGACGT
GGAAGGCCTGAATGGAGATGGGGAAGAAGTTGAGGAGGAAGGGGACAGTG
AAGGGGAAGAGAATGGCAGCGAGGAGGACGACGATGCTGATGACGACGAG
GAGGAGGAAGATGACGACGACTATGAGGAAGAAGACAACGAGGAGGACAA
TCAGGTACCGCTAGAAGCAAGCTTGGCGTTCGGGCGTGAAAAACGTGCCA
CGATGGGGAAGCGGATGGGGGGCCTAGTTGGGGAGGAGCTGGATAAGGAC
GAGACGTTTTGGGGTGACGGGAAGTGGAATATTGATGATGCCGAGTCGGA
GTACTCAAATGAATCCGAATCAGGTGATGAAGTGGACTCGGATTTCTCGG
TCAGCGAGGACGAGGCGGGGGCAGAAGGGGAGGACAAGGAGGACGAGGAA
GCGGAACGCAACCTGACCGCGCGGGAAAAGCGTCAGCAGCAGCAAGAGAT
CGGGGCCCGAAGCAAGTACAAGGAACCCAAGCGCAAAGCTCGCCTACCGC
CCAGGATTGCTGCTCTTGGGGCTGCGGCTGCGGAGGCGGCCTTGCTTTCC
AGCATGACCCCGGAGGAGGTAAAGAAGCTGAAGGAGGAACGGAAGGAGGC
CACGCGTCGCCGGCGGGAAGCAGCCTTGCTGGTTCCCGTAGACCGAGCGA
AACGTGCGACGACTCAGCAGAAAACAGTGGCAACACAAGAGGCTTTGGCC
AAGATGGGGAAGGAAGAAGCGAGGAAACACGTTGTGAAAGCACCAAGGGT
GAGTAAGTGTATGTTTACCCAGGAGGAAATGCTGGCCGAGGCGTGTAAGA
CCGAGCAGGAGAATACCCGATGGCTGCTTGCGAGGAAGAGGATGCAAAAC
GAAAGCGACACCACGGCGCATGCTCCCAAAAGGCAAGTCAAGCTGGTTGC
ACGCTTCATCTCAAGGAGGGGAGGATATACCGTAATAAACTTTCCAGAAG
TGGACCTGATGCCGGCGATTTTGAAAGGGGGGGAAGGAGGGAAGGAGGAG
AGACGGAAGCGATTGAGGACAGAGGACGGGAGTGGGACAAATATCAGAAA
GTGTGTGATTACGGGATTGCCTGCCCGGTATCTTGATCCTCTCACCAGAC
AGCCATATGCGAATCGGGAGGCGTTCAAGTCGTTAAGGGCCGATTCGCAA
TATATGCCCCAGGAAGAGGACGAGGGAGAGGGCGAGGACGAAGACGAGGA
TGAAGGGATGGGGGTGCCGGCTGATGATGAGGAGGGAGGGGTGAAGGAAG
AGTTGAGAAAGGGGTCGTCGATGAGTTCGTCTCTAACGAATGAATCTTTT
GGGTAG
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Coding sequence (CDS) from alignment at chr12:531483..532838+

>NO12G01840.1 ID=NO12G01840.1|Name=NO12G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr12:531483..532838+ (Nannochloropsis oceanica)
ATGGCGCGGGCCACAAGGGCCAGTCTGGGTATAAACTCGGATGTTGACGT
GGAAGGCCTGAATGGAGATGGGGAAGAAGTTGAGGAGGAAGGGGACAGTG
AAGGGGAAGAGAATGGCAGCGAGGAGGACGACGATGCTGATGACGACGAG
GAGGAGGAAGATGACGACGACTATGAGGAAGAAGACAACGAGGAGGACAA
TCAGGTACCGCTAGAAGCAAGCTTGGCGTTCGGGCGTGAAAAACGTGCCA
CGATGGGGAAGCGGATGGGGGGCCTAGTTGGGGAGGAGCTGGATAAGGAC
GAGACGTTTTGGGGTGACGGGAAGTGGAATATTGATGATGCCGAGTCGGA
GTACTCAAATGAATCCGAATCAGGTGATGAAGTGGACTCGGATTTCTCGG
TCAGCGAGGACGAGGCGGGGGCAGAAGGGGAGGACAAGGAGGACGAGGAA
GCGGAACGCAACCTGACCGCGCGGGAAAAGCGTCAGCAGCAGCAAGAGAT
CGGGGCCCGAAGCAAGTACAAGGAACCCAAGCGCAAAGCTCGCCTACCGC
CCAGGATTGCTGCTCTTGGGGCTGCGGCTGCGGAGGCGGCCTTGCTTTCC
AGCATGACCCCGGAGGAGGTAAAGAAGCTGAAGGAGGAACGGAAGGAGGC
CACGCGTCGCCGGCGGGAAGCAGCCTTGCTGGTTCCCGTAGACCGAGCGA
AACGTGCGACGACTCAGCAGAAAACAGTGGCAACACAAGAGGCTTTGGCC
AAGATGGGGAAGGAAGAAGCGAGGAAACACGTTGTGAAAGCACCAAGGGT
GAGTAAGTGTATGTTTACCCAGGAGGAAATGCTGGCCGAGGCGTGTAAGA
CCGAGCAGGAGAATACCCGATGGCTGCTTGCGAGGAAGAGGATGCAAAAC
GAAAGCGACACCACGGCGCATGCTCCCAAAAGGCAAGTCAAGCTGGTTGC
ACGCTTCATCTCAAGGAGGGGAGGATATACCGTAATAAACTTTCCAGAAG
TGGACCTGATGCCGGCGATTTTGAAAGGGGGGGAAGGAGGGAAGGAGGAG
AGACGGAAGCGATTGAGGACAGAGGACGGGAGTGGGACAAATATCAGAAA
GTGTGTGATTACGGGATTGCCTGCCCGGTATCTTGATCCTCTCACCAGAC
AGCCATATGCGAATCGGGAGGCGTTCAAGTCGTTAAGGGCCGATTCGCAA
TATATGCCCCAGGAAGAGGACGAGGGAGAGGGCGAGGACGAAGACGAGGA
TGAAGGGATGGGGGTGCCGGCTGATGATGAGGAGGGAGGGGTGAAGGAAG
AGTTGAGAAAGGGGTCGTCGATGAGTTCGTCTCTAACGAATGAATCTTTT
GGGTAG
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Synonyms
Publications