NO12G01830.1, NO12G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01830.1
Unique NameNO12G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr12:529664..531268 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:529664..531268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01830.1 vs.
Match: XP_005856125.1 (hypothetical protein NGA_0334500 [Nannochloropsis gaditana CCMP526]; EKU20261.1 hypothetical protein NGA_0334500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 451.4 bits (1160), Expect = 3.800e-123
Identity = 269/547 (49.18%), Postives = 348/547 (63.62%), Query Frame = 0 
Query:    1 MVDNTGAKPESPTSIWTSRIPKEWALLDEKLEVGSIPSGSRISVLSKTLDQERGVCKCTFQVVPRVAEREE----EEGELFLAEESGVVLEIDASSRAA---GTGV----AYPFVPPTLKVVRGAELWPSEIVRSEDQTMILPLLAAWTPKLGLADLMLAAAEALQAHAEAHAEGNYDESTTFEPGDALSLKTFGDRLFRGTMAQQGGPVLQRYLGVTDSWLLNAKAHETKLETVFVIKAQPLRQVSKLKYKREMSISIEFRDGDRWTFAMPRAAECVEAIQASLREKGVVGRRTSQAALDHVARAKACLEEAQLREAALLECGARSMEKVQGVCDLYKHAIEKFATVSTDENKQKTTEAIFLLQSFLSRPEVQEVLTNNSRSPAVCAASTGRRVASLPTLPKVKFNPFTSQPKTKKGEVLPRSASAGMVSGDDDGLAREEKMLDPLSNRLKELLDLNLNNAVAAEGDGRDRGDSTSSLSASGCKGR------NRGGYVDTEGGSMDAVMSELDTVLGQAEKELENLNSPRARRPMARTAAGEAEEE 531
            M D++   P SPTSIW+SR+P+E A L+EKL  G+     R++VLSKTLD + GVCKCT  +  R  + ++    E+  L L E  GV+LE+DASSR A   GTGV    AYPFVPP + V++G +L P+  V  + +T++L  L AWTPK+GLADL+LAAAEA+Q    AH E    E+  +EP   L ++  GDRLF G++ QQGG +L RYL VT++W+LN KAHE KL +V V+KA+P   + KL+YK+  SIS+EFRDGDRW  AM RA ECVEAIQ +LR +GVVG RTSQAAL+HVARA+A L+EAQ RE A  E G  ++ +V+ VCDLYK A E+F + S++E+  +T EA+  LQSFLSRPEVQ++L       A  A+ TG         P  + +   S P  +KGEVL  SA A M SG+DDGL+REE+ L PLS RLK +LDLNL    A   D     DSTSS S +G   R        G      GG +DA + ELD  LG+A +E E L SP   + +     G  EEE
Sbjct:    1 MTDSSDPAPVSPTSIWSSRMPRELASLEEKLRRGTSTRTCRVTVLSKTLDNDNGVCKCTVMLNRRDEQADDRGPDEDEPLDLGETGGVLLEVDASSRPATGEGTGVSGATAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKVGLADLVLAAAEAVQGFEGAHDED--PETRGYEPNHVLDVRHLGDRLFPGSVPQQGGDMLPRYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQXREEAAEEGGHWTLAQVRSVCDLYKQATERFGSFSSEESIARTGEAVGRLQSFLSRPEVQDLL-------ARTASPTGAEPPDSDESPDPEGSGTLSSPPARKGEVLAGSAVADMASGEDDGLSREERRLAPLSERLKHMLDLNLRKPAADARDRLPSLDSTSSSSGTGGNSRTGAAVAGEGPAPMRRGGGVDAELHELDEALGEASREWEGLRSPGPVQTLEEPLTGSEEEE 538
The following BLAST results are available for this feature:
BLAST of NO12G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856125.13.800e-12349.18hypothetical protein NGA_0334500 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01830NO12G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01830.1NO12G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01830.1.cds1NO12G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01830.1 ID=NO12G01830.1|Name=NO12G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
ATGGTGGACAACACAGGGGCTAAGCCCGAATCCCCGACATCCATCTGGAC
CTCCCGTATACCCAAGGAGTGGGCTCTACTCGACGAAAAGCTGGAGGTTG
GAAGTATACCTTCAGGAAGCCGCATCAGTGTCCTGTCCAAAACCCTAGAC
CAAGAAAGGGGCGTGTGCAAGTGTACGTTTCAAGTGGTGCCACGTGTTGC
GGAAAGAGAAGAGGAAGAAGGTGAGTTGTTCTTGGCAGAGGAGAGCGGCG
TGGTACTTGAGATTGACGCGTCTTCCAGAGCAGCGGGGACAGGAGTCGCC
TATCCCTTTGTCCCACCAACCCTGAAAGTGGTGCGAGGCGCGGAGCTCTG
GCCAAGCGAAATTGTCCGAAGCGAGGATCAGACTATGATCCTACCGTTGC
TGGCGGCATGGACCCCTAAACTAGGCCTGGCGGACCTGATGCTTGCGGCA
GCCGAGGCCTTACAAGCACACGCGGAAGCACACGCGGAAGGCAATTACGA
TGAGAGCACCACCTTTGAACCCGGAGATGCCTTGAGCTTGAAGACGTTTG
GGGACCGACTTTTCCGGGGTACGATGGCTCAGCAGGGTGGACCGGTGCTG
CAGCGTTACTTAGGTGTGACGGACAGTTGGTTGTTGAATGCAAAAGCGCA
TGAGACGAAGCTAGAAACCGTGTTCGTGATCAAAGCTCAGCCGCTACGAC
AAGTGAGTAAGCTGAAGTATAAGAGAGAGATGTCGATTTCAATTGAGTTT
AGGGACGGCGATCGCTGGACGTTTGCGATGCCACGGGCTGCTGAGTGTGT
TGAGGCCATTCAAGCTTCCTTGCGAGAAAAGGGGGTGGTGGGGCGGAGGA
CCAGTCAAGCGGCGCTTGATCACGTAGCGCGCGCCAAGGCCTGCTTGGAA
GAAGCGCAACTGCGGGAAGCAGCCCTGTTGGAGTGTGGAGCCAGGTCAAT
GGAAAAGGTGCAGGGGGTTTGTGATTTATACAAGCACGCCATCGAAAAGT
TCGCCACGGTCTCGACAGATGAAAACAAGCAAAAAACCACCGAGGCTATT
TTCCTACTCCAATCCTTCCTCAGTCGTCCCGAGGTCCAAGAGGTTCTTAC
CAATAACTCTCGCTCACCTGCTGTTTGTGCTGCTTCTACAGGACGCCGCG
TCGCCTCTCTGCCCACCCTGCCCAAAGTCAAATTCAATCCATTTACGTCA
CAGCCAAAAACGAAAAAAGGCGAGGTGCTCCCCCGATCAGCATCTGCTGG
CATGGTATCAGGGGACGATGACGGGCTTGCCCGAGAGGAGAAAATGTTAG
ACCCGTTGTCTAATCGATTGAAAGAGTTGTTGGACCTCAACTTGAATAAT
GCCGTAGCCGCAGAGGGAGACGGGCGGGATCGAGGAGACAGCACATCTTC
TTTGTCTGCCAGTGGTTGCAAAGGACGGAATAGAGGCGGGTATGTAGATA
CGGAGGGAGGTAGTATGGATGCGGTGATGTCAGAGCTAGATACAGTGTTA
GGGCAGGCCGAAAAAGAGCTGGAGAACCTGAATTCCCCTCGGGCAAGGCG
ACCGATGGCGAGGACGGCAGCGGGGGAGGCTGAAGAGGAGGAAATTGAGA
TATAA
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protein sequence of NO12G01830.1

>NO12G01830.1-protein ID=NO12G01830.1-protein|Name=NO12G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MVDNTGAKPESPTSIWTSRIPKEWALLDEKLEVGSIPSGSRISVLSKTLD
QERGVCKCTFQVVPRVAEREEEEGELFLAEESGVVLEIDASSRAAGTGVA
YPFVPPTLKVVRGAELWPSEIVRSEDQTMILPLLAAWTPKLGLADLMLAA
AEALQAHAEAHAEGNYDESTTFEPGDALSLKTFGDRLFRGTMAQQGGPVL
QRYLGVTDSWLLNAKAHETKLETVFVIKAQPLRQVSKLKYKREMSISIEF
RDGDRWTFAMPRAAECVEAIQASLREKGVVGRRTSQAALDHVARAKACLE
EAQLREAALLECGARSMEKVQGVCDLYKHAIEKFATVSTDENKQKTTEAI
FLLQSFLSRPEVQEVLTNNSRSPAVCAASTGRRVASLPTLPKVKFNPFTS
QPKTKKGEVLPRSASAGMVSGDDDGLAREEKMLDPLSNRLKELLDLNLNN
AVAAEGDGRDRGDSTSSLSASGCKGRNRGGYVDTEGGSMDAVMSELDTVL
GQAEKELENLNSPRARRPMARTAAGEAEEEEIEI*
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mRNA from alignment at chr12:529664..531268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01830.1 ID=NO12G01830.1|Name=NO12G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr12:529664..531268- (Nannochloropsis oceanica)
ATGGTGGACAACACAGGGGCTAAGCCCGAATCCCCGACATCCATCTGGAC
CTCCCGTATACCCAAGGAGTGGGCTCTACTCGACGAAAAGCTGGAGGTTG
GAAGTATACCTTCAGGAAGCCGCATCAGTGTCCTGTCCAAAACCCTAGAC
CAAGAAAGGGGCGTGTGCAAGTGTACGTTTCAAGTGGTGCCACGTGTTGC
GGAAAGAGAAGAGGAAGAAGGTGAGTTGTTCTTGGCAGAGGAGAGCGGCG
TGGTACTTGAGATTGACGCGTCTTCCAGAGCAGCGGGGACAGGAGTCGCC
TATCCCTTTGTCCCACCAACCCTGAAAGTGGTGCGAGGCGCGGAGCTCTG
GCCAAGCGAAATTGTCCGAAGCGAGGATCAGACTATGATCCTACCGTTGC
TGGCGGCATGGACCCCTAAACTAGGCCTGGCGGACCTGATGCTTGCGGCA
GCCGAGGCCTTACAAGCACACGCGGAAGCACACGCGGAAGGCAATTACGA
TGAGAGCACCACCTTTGAACCCGGAGATGCCTTGAGCTTGAAGACGTTTG
GGGACCGACTTTTCCGGGGTACGATGGCTCAGCAGGGTGGACCGGTGCTG
CAGCGTTACTTAGGTGTGACGGACAGTTGGTTGTTGAATGCAAAAGCGCA
TGAGACGAAGCTAGAAACCGTGTTCGTGATCAAAGCTCAGCCGCTACGAC
AAGTGAGTAAGCTGAAGTATAAGAGAGAGATGTCGATTTCAATTGAGTTT
AGGGACGGCGATCGCTGGACGTTTGCGATGCCACGGGCTGCTGAGTGTGT
TGAGGCCATTCAAGCTTCCTTGCGAGAAAAGGGGGTGGTGGGGCGGAGGA
CCAGTCAAGCGGCGCTTGATCACGTAGCGCGCGCCAAGGCCTGCTTGGAA
GAAGCGCAACTGCGGGAAGCAGCCCTGTTGGAGTGTGGAGCCAGGTCAAT
GGAAAAGGTGCAGGGGGTTTGTGATTTATACAAGCACGCCATCGAAAAGT
TCGCCACGGTCTCGACAGATGAAAACAAGCAAAAAACCACCGAGGCTATT
TTCCTACTCCAATCCTTCCTCAGTCGTCCCGAGGTCCAAGAGGTTCTTAC
CAATAACTCTCGCTCACCTGCTGTTTGTGCTGCTTCTACAGGACGCCGCG
TCGCCTCTCTGCCCACCCTGCCCAAAGTCAAATTCAATCCATTTACGTCA
CAGCCAAAAACGAAAAAAGGCGAGGTGCTCCCCCGATCAGCATCTGCTGG
CATGGTATCAGGGGACGATGACGGGCTTGCCCGAGAGGAGAAAATGTTAG
ACCCGTTGTCTAATCGATTGAAAGAGTTGTTGGACCTCAACTTGAATAAT
GCCGTAGCCGCAGAGGGAGACGGGCGGGATCGAGGAGACAGCACATCTTC
TTTGTCTGCCAGTGGTTGCAAAGGACGGAATAGAGGCGGGTATGTAGATA
CGGAGGGAGGTAGTATGGATGCGGTGATGTCAGAGCTAGATACAGTGTTA
GGGCAGGCCGAAAAAGAGCTGGAGAACCTGAATTCCCCTCGGGCAAGGCG
ACCGATGGCGAGGACGGCAGCGGGGGAGGCTGAAGAGGAGGAAATTGAGA
TATAA
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Coding sequence (CDS) from alignment at chr12:529664..531268-

>NO12G01830.1 ID=NO12G01830.1|Name=NO12G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at chr12:529664..531268- (Nannochloropsis oceanica)
ATGGTGGACAACACAGGGGCTAAGCCCGAATCCCCGACATCCATCTGGAC
CTCCCGTATACCCAAGGAGTGGGCTCTACTCGACGAAAAGCTGGAGGTTG
GAAGTATACCTTCAGGAAGCCGCATCAGTGTCCTGTCCAAAACCCTAGAC
CAAGAAAGGGGCGTGTGCAAGTGTACGTTTCAAGTGGTGCCACGTGTTGC
GGAAAGAGAAGAGGAAGAAGGTGAGTTGTTCTTGGCAGAGGAGAGCGGCG
TGGTACTTGAGATTGACGCGTCTTCCAGAGCAGCGGGGACAGGAGTCGCC
TATCCCTTTGTCCCACCAACCCTGAAAGTGGTGCGAGGCGCGGAGCTCTG
GCCAAGCGAAATTGTCCGAAGCGAGGATCAGACTATGATCCTACCGTTGC
TGGCGGCATGGACCCCTAAACTAGGCCTGGCGGACCTGATGCTTGCGGCA
GCCGAGGCCTTACAAGCACACGCGGAAGCACACGCGGAAGGCAATTACGA
TGAGAGCACCACCTTTGAACCCGGAGATGCCTTGAGCTTGAAGACGTTTG
GGGACCGACTTTTCCGGGGTACGATGGCTCAGCAGGGTGGACCGGTGCTG
CAGCGTTACTTAGGTGTGACGGACAGTTGGTTGTTGAATGCAAAAGCGCA
TGAGACGAAGCTAGAAACCGTGTTCGTGATCAAAGCTCAGCCGCTACGAC
AAGTGAGTAAGCTGAAGTATAAGAGAGAGATGTCGATTTCAATTGAGTTT
AGGGACGGCGATCGCTGGACGTTTGCGATGCCACGGGCTGCTGAGTGTGT
TGAGGCCATTCAAGCTTCCTTGCGAGAAAAGGGGGTGGTGGGGCGGAGGA
CCAGTCAAGCGGCGCTTGATCACGTAGCGCGCGCCAAGGCCTGCTTGGAA
GAAGCGCAACTGCGGGAAGCAGCCCTGTTGGAGTGTGGAGCCAGGTCAAT
GGAAAAGGTGCAGGGGGTTTGTGATTTATACAAGCACGCCATCGAAAAGT
TCGCCACGGTCTCGACAGATGAAAACAAGCAAAAAACCACCGAGGCTATT
TTCCTACTCCAATCCTTCCTCAGTCGTCCCGAGGTCCAAGAGGTTCTTAC
CAATAACTCTCGCTCACCTGCTGTTTGTGCTGCTTCTACAGGACGCCGCG
TCGCCTCTCTGCCCACCCTGCCCAAAGTCAAATTCAATCCATTTACGTCA
CAGCCAAAAACGAAAAAAGGCGAGGTGCTCCCCCGATCAGCATCTGCTGG
CATGGTATCAGGGGACGATGACGGGCTTGCCCGAGAGGAGAAAATGTTAG
ACCCGTTGTCTAATCGATTGAAAGAGTTGTTGGACCTCAACTTGAATAAT
GCCGTAGCCGCAGAGGGAGACGGGCGGGATCGAGGAGACAGCACATCTTC
TTTGTCTGCCAGTGGTTGCAAAGGACGGAATAGAGGCGGGTATGTAGATA
CGGAGGGAGGTAGTATGGATGCGGTGATGTCAGAGCTAGATACAGTGTTA
GGGCAGGCCGAAAAAGAGCTGGAGAACCTGAATTCCCCTCGGGCAAGGCG
ACCGATGGCGAGGACGGCAGCGGGGGAGGCTGAAGAGGAGGAAATTGAGA
TATAA
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Synonyms
Publications