|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr12 | genome | chr12:513278..516003 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01720.1 vs.
Match: EWM25882.1 (acid phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 428.3 bits (1100), Expect = 3.200e-116 Identity = 233/428 (54.44%), Postives = 285/428 (66.59%), Query Frame = 0
Query: 13 LLFTTVASLATHEGAHASSSLNFLSIGDHGMRNDKTEAIVARMAAVKEEIDASFVLLAGDNFYPKGVASVDDPLWESHFTGLFTPEAFPVPFYPVRGNHDYRSPNPDAQLEYYTKHGEEGRWIFPAAYYQTKKTLADGTTIDFIFLDTILLAPEASESETAINL-HDDEQRKEKQYVWLEAALAESTADWLLVVGHHPVFSGGEHGDTPSLVARLLPLLEKHHVDMYVSGHDHTLQHLQHLPTTHTQFFVNGNGAKMGHVRNVTQ-AHVRRAEVKLGFMSHELTRESMITKAIDREGGVVFEYTQLPRRRAALIAELEEGRGTNEGDDEERPLHGSMPALPREQLVGAMKGAPVTWEEIEAENYSSPALRGVRSKRYYLSSSSTSSRAGDVKQHHAYLRGHETPLILLMSLVG-MTIVTLTILLKRRA 438
LL + L G S+SLNFLSIGDHG+RN +TEA+ RMA KE I+ASFVLL GD FYP GV+SV+DPLW + F LFTPEAFPVPFYP+RGNHDY S NPDAQLEYY HG +GRWIFPAAYY + L DGTTIDFIFLDT LL PE +E++ A+++ + +R+ +QY WLE+ALA S ADWLLV GHHPVFS GEHGDTP LV LLPLL KH VDMY+SGHDH+LQHLQH P T TQFFVNGNGAK+G V +VTQ AHV+ A V+LGFMSH +T+ + T+AID +G VVFE+TQ +RR L A+ E DDE SM + G + + E SS A VR +RY +T SR V L + ++ + L+G M++V L + +R+A
Sbjct: 10 LLHLLICELFLARGHTESTSLNFLSIGDHGLRNMETEAVARRMALEKEAINASFVLLGGDQFYPDGVSSVEDPLWNTTFRDLFTPEAFPVPFYPIRGNHDYHSSNPDAQLEYYDTHGVDGRWIFPAAYYLLHEVLGDGTTIDFIFLDTPLLVPEEAETDGALHMPRETTRRRAQQYAWLESALARSRADWLLVFGHHPVFSTGEHGDTPGLVRHLLPLLGKHRVDMYMSGHDHSLQHLQHHPVTPTQFFVNGNGAKLGSVGHVTQAAHVKEAAVRLGFMSHHITKSKLCTRAIDAQGNVVFEHTQEAQRRLILPADTIE-------DDEMGRTGDSM-----QSKKGPTRNSNEESLEPHRGQKSSRARSHVRRRRYDNVEVTTYSREAYVTDQRGSLGRSQNIALIFLGLIGLMSLVLLFVYTRRQA 425
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01720.1 ID=NO12G01720.1|Name=NO12G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp
CGAATGGCGTGCGAACGCGGCTCTTTTTTCCTTTGCTTGCCCCTCTCTCC
TGCTGTCCAGGAGTACACGATTTGTTGATATCCCTCCGTTCACTTGCGAT
GAATCTCCACGTGCCCTGTGTCCAACCAGCTCTCTCGCCTAGTAGACAGA
AGCGCGCCCAAACTATTTTGTTGTGATTGCCAGCTCGGGAGCGGGGAATA
CCAAAGCATCAACAAGCTCCTCGAAGATGCCACCATTAGTCACATACAAG
GTCCTAGCCCGGCTACTGTTCACCACGGTCGCTTCCCTAGCAACACACGA
AGGGGCACATGCGTCTTCCAGCCTTAATTTTCTCTCGATTGGTGATCATG
GCATGCGCAACGATAAGACCGAGGCGATTGTGGCCCGGATGGCTGCGGTC
AAGGAGGAGATTGATGCCTCCTTCGTCTTGTTGGCTGGAGACAATTTCTA
CCCCAAAGGTGTCGCCAGCGTGGACGATCCTCTGTGGGAAAGTCACTTCA
CAGGCCTCTTCACTCCCGAAGCCTTCCCTGTGCCTTTTTACCCTGTCCGC
GGCAATCACGACTATCGTTCTCCAAACCCCGACGCACAGTTAGAGTACTA
TACCAAGCATGGGGAGGAGGGGCGATGGATCTTCCCTGCTGCTTACTATC
AAACTAAAAAGACCTTAGCGGATGGGACGACCATAGATTTCATCTTCCTT
GACACCATTCTCCTCGCCCCGGAGGCATCCGAATCGGAGACAGCAATTAA
TTTACATGACGATGAGCAGAGAAAAGAGAAGCAATACGTGTGGTTGGAAG
CCGCTCTGGCTGAGAGCACGGCGGATTGGTTGTTGGTGGTTGGCCATCAT
CCCGTCTTCTCGGGGGGAGAGCATGGGGACACCCCTTCATTAGTGGCTCG
GCTGTTGCCGCTGTTGGAAAAGCATCATGTGGATATGTACGTGTCGGGGC
ATGATCACACTTTGCAGCACCTTCAGCACCTTCCCACGACGCATACCCAG
TTTTTCGTGAATGGGAATGGGGCCAAGATGGGGCATGTGCGGAACGTCAC
GCAGGCTCACGTGAGGAGGGCGGAGGTAAAGCTGGGATTTATGTCTCATG
AGCTGACCAGGGAGAGCATGATTACTAAAGCGATTGATAGGGAGGGCGGG
GTGGTGTTTGAGTACACGCAGCTGCCTCGACGAAGGGCCGCGTTGATTGC
GGAGCTGGAGGAGGGGCGGGGGACAAATGAGGGAGATGATGAGGAAAGGC
CGTTACACGGTTCCATGCCCGCCCTGCCTCGGGAGCAGCTTGTTGGTGCG
ATGAAAGGGGCGCCGGTCACGTGGGAAGAGATAGAGGCGGAAAATTACTC
CTCTCCCGCTTTGCGTGGTGTTAGAAGTAAGAGGTATTACCTTTCGAGCA
GCAGCACCAGCAGCAGAGCCGGTGATGTCAAACAGCACCACGCATATTTG
AGAGGACATGAAACACCTTTGATTTTGTTGATGAGCTTAGTAGGAATGAC
TATTGTCACGCTTACAATCCTCTTGAAACGTCGTGCGCCCTCTTTCGCCG
CTTCTTCCCCCCCGCCATACCATCACTCTTTTTGTTTGGTCGGCTCCTCG
TACTTGCAGTCGTTTGTTTCTTTTACAGAGCAGCAAGAGGGAGAGGAAGA
AGAGGGGGCGGGGCAAAGAAAAGGTGAAAAAGCCGTTCGCACAGCTTCTG
GAGCATCCCTGCCAGGCGGGGGATCTTGGTGAGAAAAATGCGGAGGAAGG
GAAGCAGCAGCTACCTTGAGCTAGTTTTGTGTATATATTATGTGAATGGT
GAGGTTGTTTGGAGAGGTCATCAGAGATGTTTTTGGGGAGGATGCGGCGA
GGAGTGGGTGTGTGAGGAAGTGCTGACAGGGATTGACGGTCACGCGCGCC
CGGCATGCATTTTGACACATAACCCTAACCCTAAATTACAGAGAAGGAAT
AGGATTCCTACTCTATTTTTAGAATGTGAGTTCATAAGGACTCGGGAGCA
AGGATTTTTTTGATTGGGCAAAGCAAAGTATAAAAGCTACGAAAAATGAG
AGCTAACTCAAGGTAAGTGTGCAATTAAAAAGGCAATGTTAAAGTCAAAA
AACACAATAACGACATGTGCT back to topprotein sequence of NO12G01720.1 >NO12G01720.1-protein ID=NO12G01720.1-protein|Name=NO12G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MPPLVTYKVLARLLFTTVASLATHEGAHASSSLNFLSIGDHGMRNDKTEA
IVARMAAVKEEIDASFVLLAGDNFYPKGVASVDDPLWESHFTGLFTPEAF
PVPFYPVRGNHDYRSPNPDAQLEYYTKHGEEGRWIFPAAYYQTKKTLADG
TTIDFIFLDTILLAPEASESETAINLHDDEQRKEKQYVWLEAALAESTAD
WLLVVGHHPVFSGGEHGDTPSLVARLLPLLEKHHVDMYVSGHDHTLQHLQ
HLPTTHTQFFVNGNGAKMGHVRNVTQAHVRRAEVKLGFMSHELTRESMIT
KAIDREGGVVFEYTQLPRRRAALIAELEEGRGTNEGDDEERPLHGSMPAL
PREQLVGAMKGAPVTWEEIEAENYSSPALRGVRSKRYYLSSSSTSSRAGD
VKQHHAYLRGHETPLILLMSLVGMTIVTLTILLKRRAPSFAASSPPPYHH
SFCLVGSSYLQSFVSFTEQQEGEEEEGAGQRKGEKAVRTASGASLPGGGS
W* back to topmRNA from alignment at chr12:513278..516003- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01720.1 ID=NO12G01720.1|Name=NO12G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2726bp|location=Sequence derived from alignment at chr12:513278..516003- (Nannochloropsis oceanica)
CGAATGGCGTGCGAACGCGGCTCTTTTTTCCTTTGCTTGCCCCTCTCTCC
TGCTGTCCAGGAGTACACGATTTGTTGATATCCCTCCGTTCACTTGCGAT
GAATCTCCACGTGCCCTGTGTCCAACCAGCTCTCTCGCCTAGTAGACAGA
AGCGCGCCCAAACTATTTTGTTGTGATTGCCAGCTCGGGAGCGGGGAATA
CCAAAGCATCAACAAGCTCCTCGAAGATGCCACCATTAGTCACATACAAG
GTCCTAGCCCGGCTACTGTTCACCACGGTCGCTTCCCTAGCAACACACGA
AGGGGCACATGCGTCTTCCAGCCTTAATTTTCTCTCGGTACGTGCGCACT
ACATATCCATTTCCCCCCCGTCCGGGGCTCCCTCAAAACTCACCTGTTAC
GAAGGCCTCCTTGCCCCACGCCCACTTCCCTTCTATATTGTCATTTTCTG
GCATAAATTCCACACAGATTGGTGATCATGGCATGCGCAACGATAAGACC
GAGGCGATTGTGGCCCGGATGGCTGCGGTCAAGGAGGAGATTGATGCCTC
CTTCGTCTTGTTGGCTGGAGGTGAGTGTGTGTTGCGGGGGGCGTGCACCA
GGGCAAACAAGGAGGAAAGTGAACGAGTTGGTTGGCTACCATTAACGACA
AGCGTTCTCAAGTTGCATTAGAAACCAACCTGGCAGCCTTGACCCTGTCC
CCTCTCCCTCACCCTGCCATCTTCGGCATTATAATATAAATAAGGAGTTG
CTATCCCGCCGCTATCTTGCAATTGTCCGCCTGACACACCAAGGTGCTTT
CCATGCCCCATTTTCCCCAATGTCGGGAACTGGACGTGTTGCTCCTTTAT
TCATGCCAGCGGCCATCCGAAATGCCCTCAATTTCTCACTTTCCTCCTCC
CTCCGTCCAAGGGTTAGGGTTAACCCTAACAGAGAGCAATATCTCTTTAT
AAGTGAATCTTCCTGTTCTAGGTAGAGAATCTTCTCCTAACATCCCATTT
TAACGTCCCCTCCGCCATTTTTTCCTCCCAATCTATTCATCACAGACAAT
TTCTACCCCAAAGGTGTCGCCAGCGTGGACGATCCTCTGTGGGAAAGTCA
CTTCACAGGCCTCTTCACTCCCGAAGCCTTCCCTGTGCCTTTTTACCCTG
TCCGCGGCAATCACGACTATCGTTCTCCAAACCCCGACGCACAGTTAGAG
TACTATACCAAGCATGGGGAGGAGGGGCGATGGATCTTCCCTGCTGCTTA
CTATCAAACTAAAAAGACCTTAGCGGATGGGACGACCATAGATTTCATCT
TCCTTGACACCATTCTCCTCGCCCCGGAGGCATCCGAATCGGAGACAGCA
ATTAATTTACATGACGATGAGCAGAGAAAAGAGAAGCAATACGTGTGGTT
GGAAGCCGCTCTGGCTGAGAGCACGGCGGATTGGTTGTTGGTGGTTGGCC
ATCATCCCGTCTTCTCGGGGGGAGAGCATGGGGACACCCCTTCATTAGTG
GCTCGGCTGTTGCCGCTGTTGGAAAAGCATCATGTGGATATGTACGTGTC
GGGGCATGATCACACTTTGCAGCACCTTCAGCACCTTCCCACGACGCATA
CCCAGTTTTTCGTGAATGGGAATGGGGCCAAGATGGGGCATGTGCGGAAC
GTCACGCAGGCTCACGTGAGGAGGGCGGAGGTAAAGCTGGGATTTATGTC
TCATGAGCTGACCAGGGAGAGCATGATTACTAAAGCGATTGATAGGGAGG
GCGGGGTGGTGTTTGAGTACACGCAGCTGCCTCGACGAAGGGCCGCGTTG
ATTGCGGAGCTGGAGGAGGGGCGGGGGACAAATGAGGGAGATGATGAGGA
AAGGCCGTTACACGGTTCCATGCCCGCCCTGCCTCGGGAGCAGCTTGTTG
GTGCGATGAAAGGGGCGCCGGTCACGTGGGAAGAGATAGAGGCGGAAAAT
TACTCCTCTCCCGCTTTGCGTGGTGTTAGAAGTAAGAGGTATTACCTTTC
GAGCAGCAGCACCAGCAGCAGAGCCGGTGATGTCAAACAGCACCACGCAT
ATTTGAGAGGACATGAAACACCTTTGATTTTGTTGATGAGCTTAGTAGGA
ATGACTATTGTCACGCTTACAATCCTCTTGAAACGTCGTGCGCCCTCTTT
CGCCGCTTCTTCCCCCCCGCCATACCATCACTCTTTTTGTTTGGTCGGCT
CCTCGTACTTGCAGTCGTTTGTTTCTTTTACAGAGCAGCAAGAGGGAGAG
GAAGAAGAGGGGGCGGGGCAAAGAAAAGGTGAAAAAGCCGTTCGCACAGC
TTCTGGAGCATCCCTGCCAGGCGGGGGATCTTGGTGAGAAAAATGCGGAG
GAAGGGAAGCAGCAGCTACCTTGAGCTAGTTTTGTGTATATATTATGTGA
ATGGTGAGGTTGTTTGGAGAGGTCATCAGAGATGTTTTTGGGGAGGATGC
GGCGAGGAGTGGGTGTGTGAGGAAGTGCTGACAGGGATTGACGGTCACGC
GCGCCCGGCATGCATTTTGACACATAACCCTAACCCTAAATTACAGAGAA
GGAATAGGATTCCTACTCTATTTTTAGAATGTGAGTTCATAAGGACTCGG
GAGCAAGGATTTTTTTGATTGGGCAAAGCAAAGTATAAAAGCTACGAAAA
ATGAGAGCTAACTCAAGGTAAGTGTGCAATTAAAAAGGCAATGTTAAAGT
CAAAAAACACAATAACGACATGTGCT back to topCoding sequence (CDS) from alignment at chr12:513278..516003- >NO12G01720.1 ID=NO12G01720.1|Name=NO12G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at chr12:513278..516003- (Nannochloropsis oceanica)
ATGCCACCATTAGTCACATACAAGGTCCTAGCCCGGCTACTGTTCACCAC
GGTCGCTTCCCTAGCAACACACGAAGGGGCACATGCGTCTTCCAGCCTTA
ATTTTCTCTCGATTGGTGATCATGGCATGCGCAACGATAAGACCGAGGCG
ATTGTGGCCCGGATGGCTGCGGTCAAGGAGGAGATTGATGCCTCCTTCGT
CTTGTTGGCTGGAGACAATTTCTACCCCAAAGGTGTCGCCAGCGTGGACG
ATCCTCTGTGGGAAAGTCACTTCACAGGCCTCTTCACTCCCGAAGCCTTC
CCTGTGCCTTTTTACCCTGTCCGCGGCAATCACGACTATCGTTCTCCAAA
CCCCGACGCACAGTTAGAGTACTATACCAAGCATGGGGAGGAGGGGCGAT
GGATCTTCCCTGCTGCTTACTATCAAACTAAAAAGACCTTAGCGGATGGG
ACGACCATAGATTTCATCTTCCTTGACACCATTCTCCTCGCCCCGGAGGC
ATCCGAATCGGAGACAGCAATTAATTTACATGACGATGAGCAGAGAAAAG
AGAAGCAATACGTGTGGTTGGAAGCCGCTCTGGCTGAGAGCACGGCGGAT
TGGTTGTTGGTGGTTGGCCATCATCCCGTCTTCTCGGGGGGAGAGCATGG
GGACACCCCTTCATTAGTGGCTCGGCTGTTGCCGCTGTTGGAAAAGCATC
ATGTGGATATGTACGTGTCGGGGCATGATCACACTTTGCAGCACCTTCAG
CACCTTCCCACGACGCATACCCAGTTTTTCGTGAATGGGAATGGGGCCAA
GATGGGGCATGTGCGGAACGTCACGCAGGCTCACGTGAGGAGGGCGGAGG
TAAAGCTGGGATTTATGTCTCATGAGCTGACCAGGGAGAGCATGATTACT
AAAGCGATTGATAGGGAGGGCGGGGTGGTGTTTGAGTACACGCAGCTGCC
TCGACGAAGGGCCGCGTTGATTGCGGAGCTGGAGGAGGGGCGGGGGACAA
ATGAGGGAGATGATGAGGAAAGGCCGTTACACGGTTCCATGCCCGCCCTG
CCTCGGGAGCAGCTTGTTGGTGCGATGAAAGGGGCGCCGGTCACGTGGGA
AGAGATAGAGGCGGAAAATTACTCCTCTCCCGCTTTGCGTGGTGTTAGAA
GTAAGAGGTATTACCTTTCGAGCAGCAGCACCAGCAGCAGAGCCGGTGAT
GTCAAACAGCACCACGCATATTTGAGAGGACATGAAACACCTTTGATTTT
GTTGATGAGCTTAGTAGGAATGACTATTGTCACGCTTACAATCCTCTTGA
AACGTCGTGCGCCCTCTTTCGCCGCTTCTTCCCCCCCGCCATACCATCAC
TCTTTTTGTTTGGTCGGCTCCTCGTACTTGCAGTCGTTTGTTTCTTTTAC
AGAGCAGCAAGAGGGAGAGGAAGAAGAGGGGGCGGGGCAAAGAAAAGGTG
AAAAAGCCGTTCGCACAGCTTCTGGAGCATCCCTGCCAGGCGGGGGATCT
TGGTGA back to top
|