NO12G01690.1, NO12G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01690.1
Unique NameNO12G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1099
Alignment locationchr12:504990..506705 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:504990..506705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01690.1 vs.
Match: EWM25873.1 (s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 436.4 bits (1121), Expect = 6.900e-119
Identity = 216/260 (83.08%), Postives = 237/260 (91.15%), Query Frame = 0 
Query:   28 AGGAAGTAVDVSLFPLDTIKTRLQASEGFWKAGGFRGVYKGLGAAAAGSAPGASLFFSIYESLKQKAEPYVAKEYAPLVHMAAASFGETGACLVRVPTENVKQNLQAGRYATQGEAMRMIMAKEGLMGFYRGFLSTVFREVPFSFIQFPIYEAAKAAWSHEQGTPISPFQAAACGSFAGAIAAAMTTPLDVIKTRLILEKDVHGRKYTGIVDVFRRVVKEEGGKTLFSGLAPRVMWITIGGFVYFGAYEEVRRLLSPVFP 288
            AGGAAGTAVD+SLFPLDTIKTRLQASEGFWKAGGFRGVYKGLGAAAAGSAPGA+LFFSIYE++K +AEP V+   APLVHM AAS GETGACL+RVPTENVKQNLQAGRY T  EA+R I  +EG+MGFY+GFLSTVFRE+PFSF+QFP+YEAAKA W+ EQG P+SP QAAACGS AGA+AAA+TTPLDVIKTRLILEKD+ GRKY GIVDVFRRVV EEG  TLF+G+APRVMWITIGGFVYFGAYEEVRRLLSPVFP
Sbjct:   19 AGGAAGTAVDMSLFPLDTIKTRLQASEGFWKAGGFRGVYKGLGAAAAGSAPGAALFFSIYETIKIEAEPLVSDRLAPLVHMVAASVGETGACLIRVPTENVKQNLQAGRYNTNAEALRTIWKQEGVMGFYKGFLSTVFREIPFSFLQFPMYEAAKAFWAQEQGRPVSPLQAAACGSVAGAVAAAVTTPLDVIKTRLILEKDMQGRKYHGIVDVFRRVVAEEGPMTLFAGVAPRVMWITIGGFVYFGAYEEVRRLLSPVFP 278
The following BLAST results are available for this feature:
BLAST of NO12G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25873.16.900e-11983.08s-adenosylmethionine mitochondrial carrier protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01690NO12G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01690.1NO12G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01690.1.cds1NO12G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01690.1.cds2NO12G01690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01690.1.cds3NO12G01690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01690.1.cds4NO12G01690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01690.1 ID=NO12G01690.1|Name=NO12G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp
ACAGCACCAACACAAGCTCATCTACAACACAAGCAGCATGGCAGAATCCA
GCTTTGAGCAAACGGCCGCACCACCGTGCTCTATTTCTCAACAATACTCG
TTCATGAGCAACCTGCTGGCAGGGGGTGCGGCGGGGACGGCCGTGGACGT
TTCCCTCTTCCCGCTTGACACCATCAAGACGCGGTTACAAGCGTCGGAAG
GATTTTGGAAAGCTGGTGGCTTCCGCGGAGTCTACAAAGGCTTAGGCGCT
GCCGCCGCCGGCTCCGCGCCGGGGGCCTCTCTTTTCTTCTCAATCTACGA
GTCACTTAAACAAAAAGCAGAGCCATATGTAGCCAAGGAGTATGCGCCCT
TAGTGCACATGGCAGCGGCGTCGTTCGGAGAGACAGGGGCATGCTTAGTG
AGGGTGCCAACGGAAAACGTAAAGCAGAACTTACAGGCGGGGCGATACGC
GACTCAGGGAGAGGCCATGAGGATGATTATGGCGAAGGAGGGGTTGATGG
GTTTTTACAGAGGCTTCTTGTCCACAGTCTTTCGGGAGGTTCCCTTCTCT
TTCATCCAGTTCCCCATCTATGAAGCAGCCAAAGCCGCCTGGTCCCACGA
ACAAGGGACGCCCATCTCCCCCTTCCAAGCAGCAGCGTGTGGGAGTTTCG
CCGGGGCTATCGCGGCAGCTATGACCACTCCACTGGACGTGATTAAAACG
AGGTTAATTTTGGAAAAAGACGTGCATGGTAGGAAGTACACAGGGATCGT
GGATGTGTTCAGGAGGGTAGTGAAGGAGGAAGGAGGGAAGACTTTGTTCA
GCGGGTTGGCACCGCGAGTAATGTGGATTACGATTGGCGGGTTTGTGTAC
TTCGGGGCGTATGAGGAGGTGAGGCGCTTGCTGTCGCCGGTATTCCCGCT
CTCGACGATCTAGAGTTAGAGATGATGGTTGTTAGGAAGGAAGGTGGTTG
TTAGGGAGGAATGAGAAGGTACGAGTGGCCGTTGTATGTACATAGAGATA
GGGAGTCTTCCGCATTGGAAGACATCGATCGATCGATAAATGTAAACTAA
ATATACGTCCGTCATCTTTAAATAAAGCCCAACGAAAAACAGTACCGCC
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protein sequence of NO12G01690.1

>NO12G01690.1-protein ID=NO12G01690.1-protein|Name=NO12G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MAESSFEQTAAPPCSISQQYSFMSNLLAGGAAGTAVDVSLFPLDTIKTRL
QASEGFWKAGGFRGVYKGLGAAAAGSAPGASLFFSIYESLKQKAEPYVAK
EYAPLVHMAAASFGETGACLVRVPTENVKQNLQAGRYATQGEAMRMIMAK
EGLMGFYRGFLSTVFREVPFSFIQFPIYEAAKAAWSHEQGTPISPFQAAA
CGSFAGAIAAAMTTPLDVIKTRLILEKDVHGRKYTGIVDVFRRVVKEEGG
KTLFSGLAPRVMWITIGGFVYFGAYEEVRRLLSPVFPLSTI*
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mRNA from alignment at chr12:504990..506705+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01690.1 ID=NO12G01690.1|Name=NO12G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp|location=Sequence derived from alignment at chr12:504990..506705+ (Nannochloropsis oceanica)
ACAGCACCAACACAAGCTCATCTACAACACAAGCAGCATGGCAGAATCCA
GCTTTGAGCAAACGGCCGCACCACCGTGCTCTATTTCTCAACAATACTCG
TTCATGAGCAACCTGCTGGTAAGTCCGCACGTGTAGAGAAAGTGGGCGGG
TTTGGATTGAGGGAGGGGGGGATACTACCCGTACGCCTCGCGGAGATCGA
TCTTGTGAACCGGCGCAGCCTCCCTAGCCACAGCTACGCACGCTTATGTG
CCTCTTAGCATATGCTGTCAGTTTTTTTTTTAGAGTAGGCTAATGGAAGA
GTCATCCCATGACTCACATGTAGCTCCCCTTTCCTCCCTGAACCTCCCGC
GCTACCCGCGCTACTTATGTAGGCAGGGGGTGCGGCGGGGACGGCCGTGG
ACGTTTCCCTCTTCCCGCTTGACACCATCAAGACGCGGTAAGCTTGCTTA
GAACACAAACAGATGTCTCGATCATAAGAGAGGAGGTCGCTCTTCTGTTA
TTTGGAAGGAGGATTAACTAACTCATTTATTCCCTCGTCCGCCCCCCCCT
CAACTCACCCACCACTTCGCTACAGGTTACAAGCGTCGGAAGGATTTTGG
AAAGCTGGTGGCTTCCGCGGAGTCTACAAAGGCTTAGGCGCTGCCGCCGC
CGGCTCCGCGCCGGGGGCCTCTCTTTTCTTCTCAATCTACGAGTCACTTA
AACAAAAAGCAGAGCCATATGTAGCCAAGGAGTATGCGCCCTTAGTGCAC
ATGGCAGCGGCGTCGTTCGGAGAGACAGGGGCATGCTTAGTGAGGGTGCC
AACGGAAAACGTAAAGCAGAACTTACAGGCGGGGCGATACGCGACTCAGG
GAGAGGCCATGAGGATGATTATGGCGAAGGAGGGGTTGATGGGTTTTTAC
AGAGGCTTCTTGTCCACAGTCTTTCGGGAGGTAAGGAGGGAGGAAGAGAG
GTAGGGGAGAGAAAGATAGGGCGTGAGGCAGAATTTGCAGAGAGGTAGAG
TCCAGACTCAGTCGCAGGGAAGAAGGGAGGGAAAGCGGAAGGGAGGGATT
ATGCGTGGGGTATGTCCGATTCACTACTTGTTTTTCTTTTCACTAGTAAG
TGATCATGACGACCTCAAAGTCACCTGTACCTTTGCCCCCTCCCTTCCTC
GGAAGGTTCCCTTCTCTTTCATCCAGTTCCCCATCTATGAAGCAGCCAAA
GCCGCCTGGTCCCACGAACAAGGGACGCCCATCTCCCCCTTCCAAGCAGC
AGCGTGTGGGAGTTTCGCCGGGGCTATCGCGGCAGCTATGACCACTCCAC
TGGACGTGATTAAAACGAGGTTAATTTTGGAAAAAGACGTGCATGGTAGG
AAGTACACAGGGATCGTGGATGTGTTCAGGAGGGTAGTGAAGGAGGAAGG
AGGGAAGACTTTGTTCAGCGGGTTGGCACCGCGAGTAATGTGGATTACGA
TTGGCGGGTTTGTGTACTTCGGGGCGTATGAGGAGGTGAGGCGCTTGCTG
TCGCCGGTATTCCCGCTCTCGACGATCTAGAGTTAGAGATGATGGTTGTT
AGGAAGGAAGGTGGTTGTTAGGGAGGAATGAGAAGGTACGAGTGGCCGTT
GTATGTACATAGAGATAGGGAGTCTTCCGCATTGGAAGACATCGATCGAT
CGATAAATGTAAACTAAATATACGTCCGTCATCTTTAAATAAAGCCCAAC
GAAAAACAGTACCGCC
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Coding sequence (CDS) from alignment at chr12:504990..506705+

>NO12G01690.1 ID=NO12G01690.1|Name=NO12G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr12:504990..506705+ (Nannochloropsis oceanica)
ATGGCAGAATCCAGCTTTGAGCAAACGGCCGCACCACCGTGCTCTATTTC
TCAACAATACTCGTTCATGAGCAACCTGCTGGCAGGGGGTGCGGCGGGGA
CGGCCGTGGACGTTTCCCTCTTCCCGCTTGACACCATCAAGACGCGGTTA
CAAGCGTCGGAAGGATTTTGGAAAGCTGGTGGCTTCCGCGGAGTCTACAA
AGGCTTAGGCGCTGCCGCCGCCGGCTCCGCGCCGGGGGCCTCTCTTTTCT
TCTCAATCTACGAGTCACTTAAACAAAAAGCAGAGCCATATGTAGCCAAG
GAGTATGCGCCCTTAGTGCACATGGCAGCGGCGTCGTTCGGAGAGACAGG
GGCATGCTTAGTGAGGGTGCCAACGGAAAACGTAAAGCAGAACTTACAGG
CGGGGCGATACGCGACTCAGGGAGAGGCCATGAGGATGATTATGGCGAAG
GAGGGGTTGATGGGTTTTTACAGAGGCTTCTTGTCCACAGTCTTTCGGGA
GGTTCCCTTCTCTTTCATCCAGTTCCCCATCTATGAAGCAGCCAAAGCCG
CCTGGTCCCACGAACAAGGGACGCCCATCTCCCCCTTCCAAGCAGCAGCG
TGTGGGAGTTTCGCCGGGGCTATCGCGGCAGCTATGACCACTCCACTGGA
CGTGATTAAAACGAGGTTAATTTTGGAAAAAGACGTGCATGGTAGGAAGT
ACACAGGGATCGTGGATGTGTTCAGGAGGGTAGTGAAGGAGGAAGGAGGG
AAGACTTTGTTCAGCGGGTTGGCACCGCGAGTAATGTGGATTACGATTGG
CGGGTTTGTGTACTTCGGGGCGTATGAGGAGGTGAGGCGCTTGCTGTCGC
CGGTATTCCCGCTCTCGACGATCTAG
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Synonyms
Publications