NO12G01670.1, NO12G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01670.1
Unique NameNO12G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length864
Alignment locationchr12:500784..501647 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:500784..501647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01670.1 vs.
Match: EWM25883.1 (hypothetical protein Naga_100054g26 [Nannochloropsis gaditana])

HSP 1 Score: 287.3 bits (734), Expect = 5.100e-74
Identity = 124/211 (58.77%), Postives = 157/211 (74.41%), Query Frame = 0 
Query:   72 LVKHDGPMVCVNRGEAPFPEQGFDFFASIQGLETARHFLCQDKEAYSEYWLKEARARFQERKAEREWNAFLRNDGTCGGRRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLSLIEEEGKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWTDGGEGCLLMCIWGGGHCNIEGRRLPEGFRMGGCCGQTM 283
            +V+HDGP+VC++RG++  PEQG+DF     G +     L   KE Y   WL+E R RFQER+ E+ W  FL N G CGGR  YWA++Q+P  RSF+LHVHPC EV+HV+RGRL+ERRM+GPPLSL EEEGK V EM PVDLS + PPP FRDGVF E ++N NEMGSVHQSWT G EGC+++ +W GGHC I+G  LP+G+  GGCC +++
Sbjct:   31 VVRHDGPLVCIDRGQSALPEQGYDFLMETLGCDLGSELLGSSKEEYGARWLREVRLRFQERRYEKTWETFLENGGKCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWT-GEEGCIILLLWAGGHCFIDGACLPQGYEKGGCCTESV 240
The following BLAST results are available for this feature:
BLAST of NO12G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25883.15.100e-7458.77hypothetical protein Naga_100054g26 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01670NO12G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01670.1NO12G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01670.1.cds1NO12G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01670.1 ID=NO12G01670.1|Name=NO12G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=864bp
ATGCCGGCTGAGGCACCTGAGCCGGCTGCCAAAGCCAAGGAGGAAGACGA
AACAAGCGAGAAAACGATGTTGGCGGCAGTGGTGGGGCGGGAGGTTGAGA
CTGAAACCCAACCACATACACCAGTGCCTTTACTAGATGAGAACGAGGAG
CAGAACCAGCTACATCACGAGTATCATTTACAGAAGAAGTGTTTCATTCC
CCGCGCTATGCAGCTTGTGAAACACGACGGCCCCATGGTCTGCGTCAACC
GCGGCGAGGCTCCCTTTCCCGAGCAGGGCTTTGACTTCTTTGCATCGATA
CAAGGTCTTGAGACAGCGCGGCATTTTCTTTGCCAGGATAAAGAGGCATA
CAGTGAGTACTGGCTGAAAGAGGCACGGGCTCGCTTTCAGGAGCGGAAGG
CAGAGAGGGAGTGGAATGCCTTTCTTAGAAATGATGGGACTTGTGGTGGG
CGTCGTCTGTATTGGGCCGTGATGCAGCTTCCCCCGGGACGGAGTTTCAA
TTTACACGTCCACCCCTGTTTGGAAGTGATTCATGTTATTCGTGGACGGT
TGCATGAGCGACGGATGATCGGTCCGCCTTTGTCGTTAATAGAGGAGGAG
GGGAAGCTGGTGGAAGAGATGAAACCTGTGGACTTATCACGCATGGTGCC
ACCTCCTCAGTTTCGGGATGGGGTCTTCTTGGAGGGGAGTTTGAATGCGA
ATGAAATGGGGAGTGTGCACCAGAGTTGGACGGATGGGGGCGAAGGGTGT
TTGTTGATGTGCATTTGGGGAGGGGGACATTGTAATATCGAAGGGAGGCG
GTTGCCTGAGGGGTTTCGGATGGGAGGTTGCTGTGGACAGACGATGGTGG
AGGAACACAGATAA
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protein sequence of NO12G01670.1

>NO12G01670.1-protein ID=NO12G01670.1-protein|Name=NO12G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPAEAPEPAAKAKEEDETSEKTMLAAVVGREVETETQPHTPVPLLDENEE
QNQLHHEYHLQKKCFIPRAMQLVKHDGPMVCVNRGEAPFPEQGFDFFASI
QGLETARHFLCQDKEAYSEYWLKEARARFQERKAEREWNAFLRNDGTCGG
RRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLSLIEEE
GKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWTDGGEGC
LLMCIWGGGHCNIEGRRLPEGFRMGGCCGQTMVEEHR*
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mRNA from alignment at chr12:500784..501647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01670.1 ID=NO12G01670.1|Name=NO12G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=864bp|location=Sequence derived from alignment at chr12:500784..501647+ (Nannochloropsis oceanica)
ATGCCGGCTGAGGCACCTGAGCCGGCTGCCAAAGCCAAGGAGGAAGACGA
AACAAGCGAGAAAACGATGTTGGCGGCAGTGGTGGGGCGGGAGGTTGAGA
CTGAAACCCAACCACATACACCAGTGCCTTTACTAGATGAGAACGAGGAG
CAGAACCAGCTACATCACGAGTATCATTTACAGAAGAAGTGTTTCATTCC
CCGCGCTATGCAGCTTGTGAAACACGACGGCCCCATGGTCTGCGTCAACC
GCGGCGAGGCTCCCTTTCCCGAGCAGGGCTTTGACTTCTTTGCATCGATA
CAAGGTCTTGAGACAGCGCGGCATTTTCTTTGCCAGGATAAAGAGGCATA
CAGTGAGTACTGGCTGAAAGAGGCACGGGCTCGCTTTCAGGAGCGGAAGG
CAGAGAGGGAGTGGAATGCCTTTCTTAGAAATGATGGGACTTGTGGTGGG
CGTCGTCTGTATTGGGCCGTGATGCAGCTTCCCCCGGGACGGAGTTTCAA
TTTACACGTCCACCCCTGTTTGGAAGTGATTCATGTTATTCGTGGACGGT
TGCATGAGCGACGGATGATCGGTCCGCCTTTGTCGTTAATAGAGGAGGAG
GGGAAGCTGGTGGAAGAGATGAAACCTGTGGACTTATCACGCATGGTGCC
ACCTCCTCAGTTTCGGGATGGGGTCTTCTTGGAGGGGAGTTTGAATGCGA
ATGAAATGGGGAGTGTGCACCAGAGTTGGACGGATGGGGGCGAAGGGTGT
TTGTTGATGTGCATTTGGGGAGGGGGACATTGTAATATCGAAGGGAGGCG
GTTGCCTGAGGGGTTTCGGATGGGAGGTTGCTGTGGACAGACGATGGTGG
AGGAACACAGATAA
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Coding sequence (CDS) from alignment at chr12:500784..501647+

>NO12G01670.1 ID=NO12G01670.1|Name=NO12G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr12:500784..501647+ (Nannochloropsis oceanica)
ATGCCGGCTGAGGCACCTGAGCCGGCTGCCAAAGCCAAGGAGGAAGACGA
AACAAGCGAGAAAACGATGTTGGCGGCAGTGGTGGGGCGGGAGGTTGAGA
CTGAAACCCAACCACATACACCAGTGCCTTTACTAGATGAGAACGAGGAG
CAGAACCAGCTACATCACGAGTATCATTTACAGAAGAAGTGTTTCATTCC
CCGCGCTATGCAGCTTGTGAAACACGACGGCCCCATGGTCTGCGTCAACC
GCGGCGAGGCTCCCTTTCCCGAGCAGGGCTTTGACTTCTTTGCATCGATA
CAAGGTCTTGAGACAGCGCGGCATTTTCTTTGCCAGGATAAAGAGGCATA
CAGTGAGTACTGGCTGAAAGAGGCACGGGCTCGCTTTCAGGAGCGGAAGG
CAGAGAGGGAGTGGAATGCCTTTCTTAGAAATGATGGGACTTGTGGTGGG
CGTCGTCTGTATTGGGCCGTGATGCAGCTTCCCCCGGGACGGAGTTTCAA
TTTACACGTCCACCCCTGTTTGGAAGTGATTCATGTTATTCGTGGACGGT
TGCATGAGCGACGGATGATCGGTCCGCCTTTGTCGTTAATAGAGGAGGAG
GGGAAGCTGGTGGAAGAGATGAAACCTGTGGACTTATCACGCATGGTGCC
ACCTCCTCAGTTTCGGGATGGGGTCTTCTTGGAGGGGAGTTTGAATGCGA
ATGAAATGGGGAGTGTGCACCAGAGTTGGACGGATGGGGGCGAAGGGTGT
TTGTTGATGTGCATTTGGGGAGGGGGACATTGTAATATCGAAGGGAGGCG
GTTGCCTGAGGGGTTTCGGATGGGAGGTTGCTGTGGACAGACGATGGTGG
AGGAACACAGATAA
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Synonyms
Publications