NO12G01650.1, NO12G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01650.1
Unique NameNO12G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr12:496579..497793 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:496579..497793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01650.1 vs.
Match: EWM25891.1 (uncharacterized protein Naga_100054g24 [Nannochloropsis gaditana])

HSP 1 Score: 288.9 bits (738), Expect = 2.500e-74
Identity = 191/405 (47.16%), Postives = 245/405 (60.49%), Query Frame = 0 
Query:    1 MSLPAWPSRKRGATITSHASAAAAVVAQSPPFPSSSSTSRRKRPLSRSDQNHERQDSCA---NDNEAPELTDVAAALSLLIQRYYLQPHTQGQSRGTTRHARTITRHPSSSLTACCPVVLHHQLYTILDDHTAVDVELEDLRRRNYVRLFRLLTLRRDVGVILTATYVARVQTAL----DRQVEAGQEQELQEQEQRKGVSKMEEDARRTEDWKRELQPTTATSKTSAQDMAFVFSFFLKAVEAFTSLSVTRRQLETLLTNHLDTLSLPSKLSLTSFSTSCNIGRPK-----YPAIDLIIRVLLHNGFLARRVDAAHEEEAYWFSTPELGRVTVSLPHGRKAILTALHRSRYKELSERNLGALDLKDTILSLPFHIADLVGSKEVLTESTASGVFLKLPPAAATG 394
            MSL  WP R+   +  +         ++ P F  S++ S RKR  S S+   ++ DS     ND  +  L+DV AA+ LLIQR+Y     QG S   +R  +             CPVVL HQLYT+LDDHT+VDVELEDL+  N+VRLFRLLTLRRD+GV+LT+TY ARVQ A      ++   G+++ + E      V++ EED       KR    +   SK SA+ MA V  FFLK V+  T++ +T+ QLE+L   +  ++S     +    S S   G+ +      P+ID + RVL+H GFLARRVDA +E  AYWFS PELG VT SLP GRKAIL AL RSRYKELSE+NLGAL LK T LSL FH+ADLVGS EVL   TASG+FL+LP   A+G
Sbjct:    1 MSLAPWPKRRPDGSFEA---------SKLPIFERSATFSGRKRARSASETEQQQYDSSCPLQNDVSSEHLSDVVAAILLLIQRFY-----QGTSTNDSRRLKMEN----------CPVVLQHQLYTVLDDHTSVDVELEDLKTSNHVRLFRLLTLRRDIGVLLTSTYKARVQAAFAAFAQQEGTRGRDENITE-SICNSVTEREEDGND----KRSRNSSVQASKLSARHMALVSDFFLKTVDRVTNIIMTQHQLESLWGEYTQSISHSQAPACPRSSMSAGPGKRRAAPSLLPSIDEVTRVLIHYGFLARRVDAVYEGPAYWFSAPELGSVTASLPRGRKAILAALARSRYKELSEQNLGALRLKGTALSLSFHMADLVGSGEVLAVPTASGMFLRLPARTASG 376
The following BLAST results are available for this feature:
BLAST of NO12G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25891.12.500e-7447.16uncharacterized protein Naga_100054g24 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01650NO12G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01650.1NO12G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01650.1.cds1NO12G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01650.1 ID=NO12G01650.1|Name=NO12G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGTCGCTGCCGGCCTGGCCTTCCCGCAAGCGTGGGGCCACAATAACCTC
CCATGCGTCTGCGGCTGCCGCTGTCGTCGCTCAGTCTCCTCCCTTCCCAA
GTAGCAGCTCCACAAGCAGGCGAAAACGTCCTCTCTCGCGCTCAGACCAA
AATCATGAGCGGCAAGACAGCTGCGCAAATGACAATGAGGCCCCCGAACT
CACGGACGTGGCGGCGGCGCTTTCCCTTTTAATCCAGCGCTACTACCTCC
AACCTCACACCCAAGGCCAAAGCCGAGGCACCACGAGGCATGCTCGCACA
ATTACACGCCATCCTTCCTCTTCCTTGACAGCATGCTGTCCCGTTGTGCT
GCATCACCAGCTGTACACAATTTTGGACGATCACACGGCTGTAGACGTGG
AGCTCGAGGACTTGCGACGGCGGAACTACGTTCGGTTGTTCCGTTTGCTC
ACCCTGCGGCGAGACGTGGGCGTAATCCTGACAGCGACATACGTGGCCCG
CGTTCAGACTGCTTTGGACCGGCAAGTAGAAGCTGGACAGGAGCAGGAGC
TGCAAGAGCAGGAGCAGCGGAAGGGGGTGTCAAAGATGGAGGAAGATGCA
AGAAGAACGGAGGACTGGAAGAGAGAATTGCAACCAACTACAGCAACAAG
CAAGACCTCGGCCCAAGACATGGCATTTGTATTTTCTTTTTTTCTCAAAG
CTGTCGAGGCTTTCACAAGCCTCAGCGTCACGCGGCGGCAGCTTGAAACC
CTGTTGACCAACCATCTTGACACACTCTCACTCCCCTCCAAGCTCTCGCT
CACAAGCTTCAGCACCAGCTGTAACATCGGTCGGCCAAAATACCCGGCAA
TCGACTTAATAATCCGCGTCCTCCTCCACAACGGTTTTCTCGCCCGCCGA
GTCGACGCCGCCCACGAAGAAGAAGCTTACTGGTTCTCCACACCAGAGCT
CGGACGCGTTACCGTCTCCCTCCCCCACGGCCGCAAAGCCATCCTGACCG
CGCTCCATCGTTCTCGATACAAGGAACTCTCGGAACGAAATCTCGGTGCG
CTGGACCTCAAAGACACAATACTTTCCCTCCCCTTCCATATCGCGGACTT
GGTGGGGAGCAAAGAAGTGCTGACAGAATCGACGGCCTCGGGAGTGTTTC
TCAAGTTGCCCCCAGCAGCGGCTACGGGTGAAAGGAGCTCACGGAACAGG
ACAAGGAGGACGTAA
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protein sequence of NO12G01650.1

>NO12G01650.1-protein ID=NO12G01650.1-protein|Name=NO12G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MSLPAWPSRKRGATITSHASAAAAVVAQSPPFPSSSSTSRRKRPLSRSDQ
NHERQDSCANDNEAPELTDVAAALSLLIQRYYLQPHTQGQSRGTTRHART
ITRHPSSSLTACCPVVLHHQLYTILDDHTAVDVELEDLRRRNYVRLFRLL
TLRRDVGVILTATYVARVQTALDRQVEAGQEQELQEQEQRKGVSKMEEDA
RRTEDWKRELQPTTATSKTSAQDMAFVFSFFLKAVEAFTSLSVTRRQLET
LLTNHLDTLSLPSKLSLTSFSTSCNIGRPKYPAIDLIIRVLLHNGFLARR
VDAAHEEEAYWFSTPELGRVTVSLPHGRKAILTALHRSRYKELSERNLGA
LDLKDTILSLPFHIADLVGSKEVLTESTASGVFLKLPPAAATGERSSRNR
TRRT*
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mRNA from alignment at chr12:496579..497793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01650.1 ID=NO12G01650.1|Name=NO12G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at chr12:496579..497793+ (Nannochloropsis oceanica)
ATGTCGCTGCCGGCCTGGCCTTCCCGCAAGCGTGGGGCCACAATAACCTC
CCATGCGTCTGCGGCTGCCGCTGTCGTCGCTCAGTCTCCTCCCTTCCCAA
GTAGCAGCTCCACAAGCAGGCGAAAACGTCCTCTCTCGCGCTCAGACCAA
AATCATGAGCGGCAAGACAGCTGCGCAAATGACAATGAGGCCCCCGAACT
CACGGACGTGGCGGCGGCGCTTTCCCTTTTAATCCAGCGCTACTACCTCC
AACCTCACACCCAAGGCCAAAGCCGAGGCACCACGAGGCATGCTCGCACA
ATTACACGCCATCCTTCCTCTTCCTTGACAGCATGCTGTCCCGTTGTGCT
GCATCACCAGCTGTACACAATTTTGGACGATCACACGGCTGTAGACGTGG
AGCTCGAGGACTTGCGACGGCGGAACTACGTTCGGTTGTTCCGTTTGCTC
ACCCTGCGGCGAGACGTGGGCGTAATCCTGACAGCGACATACGTGGCCCG
CGTTCAGACTGCTTTGGACCGGCAAGTAGAAGCTGGACAGGAGCAGGAGC
TGCAAGAGCAGGAGCAGCGGAAGGGGGTGTCAAAGATGGAGGAAGATGCA
AGAAGAACGGAGGACTGGAAGAGAGAATTGCAACCAACTACAGCAACAAG
CAAGACCTCGGCCCAAGACATGGCATTTGTATTTTCTTTTTTTCTCAAAG
CTGTCGAGGCTTTCACAAGCCTCAGCGTCACGCGGCGGCAGCTTGAAACC
CTGTTGACCAACCATCTTGACACACTCTCACTCCCCTCCAAGCTCTCGCT
CACAAGCTTCAGCACCAGCTGTAACATCGGTCGGCCAAAATACCCGGCAA
TCGACTTAATAATCCGCGTCCTCCTCCACAACGGTTTTCTCGCCCGCCGA
GTCGACGCCGCCCACGAAGAAGAAGCTTACTGGTTCTCCACACCAGAGCT
CGGACGCGTTACCGTCTCCCTCCCCCACGGCCGCAAAGCCATCCTGACCG
CGCTCCATCGTTCTCGATACAAGGAACTCTCGGAACGAAATCTCGGTGCG
CTGGACCTCAAAGACACAATACTTTCCCTCCCCTTCCATATCGCGGACTT
GGTGGGGAGCAAAGAAGTGCTGACAGAATCGACGGCCTCGGGAGTGTTTC
TCAAGTTGCCCCCAGCAGCGGCTACGGGTGAAAGGAGCTCACGGAACAGG
ACAAGGAGGACGTAA
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Coding sequence (CDS) from alignment at chr12:496579..497793+

>NO12G01650.1 ID=NO12G01650.1|Name=NO12G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr12:496579..497793+ (Nannochloropsis oceanica)
ATGTCGCTGCCGGCCTGGCCTTCCCGCAAGCGTGGGGCCACAATAACCTC
CCATGCGTCTGCGGCTGCCGCTGTCGTCGCTCAGTCTCCTCCCTTCCCAA
GTAGCAGCTCCACAAGCAGGCGAAAACGTCCTCTCTCGCGCTCAGACCAA
AATCATGAGCGGCAAGACAGCTGCGCAAATGACAATGAGGCCCCCGAACT
CACGGACGTGGCGGCGGCGCTTTCCCTTTTAATCCAGCGCTACTACCTCC
AACCTCACACCCAAGGCCAAAGCCGAGGCACCACGAGGCATGCTCGCACA
ATTACACGCCATCCTTCCTCTTCCTTGACAGCATGCTGTCCCGTTGTGCT
GCATCACCAGCTGTACACAATTTTGGACGATCACACGGCTGTAGACGTGG
AGCTCGAGGACTTGCGACGGCGGAACTACGTTCGGTTGTTCCGTTTGCTC
ACCCTGCGGCGAGACGTGGGCGTAATCCTGACAGCGACATACGTGGCCCG
CGTTCAGACTGCTTTGGACCGGCAAGTAGAAGCTGGACAGGAGCAGGAGC
TGCAAGAGCAGGAGCAGCGGAAGGGGGTGTCAAAGATGGAGGAAGATGCA
AGAAGAACGGAGGACTGGAAGAGAGAATTGCAACCAACTACAGCAACAAG
CAAGACCTCGGCCCAAGACATGGCATTTGTATTTTCTTTTTTTCTCAAAG
CTGTCGAGGCTTTCACAAGCCTCAGCGTCACGCGGCGGCAGCTTGAAACC
CTGTTGACCAACCATCTTGACACACTCTCACTCCCCTCCAAGCTCTCGCT
CACAAGCTTCAGCACCAGCTGTAACATCGGTCGGCCAAAATACCCGGCAA
TCGACTTAATAATCCGCGTCCTCCTCCACAACGGTTTTCTCGCCCGCCGA
GTCGACGCCGCCCACGAAGAAGAAGCTTACTGGTTCTCCACACCAGAGCT
CGGACGCGTTACCGTCTCCCTCCCCCACGGCCGCAAAGCCATCCTGACCG
CGCTCCATCGTTCTCGATACAAGGAACTCTCGGAACGAAATCTCGGTGCG
CTGGACCTCAAAGACACAATACTTTCCCTCCCCTTCCATATCGCGGACTT
GGTGGGGAGCAAAGAAGTGCTGACAGAATCGACGGCCTCGGGAGTGTTTC
TCAAGTTGCCCCCAGCAGCGGCTACGGGTGAAAGGAGCTCACGGAACAGG
ACAAGGAGGACGTAA
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Synonyms
Publications