NO12G01560.1, NO12G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01560.1
Unique NameNO12G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr12:474117..474740 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:474117..474740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01560.1 vs.
Match: EWM25872.1 (hypothetical protein Naga_100054g17 [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 2.300e-23
Identity = 73/194 (37.63%), Postives = 113/194 (58.25%), Query Frame = 0 
Query:   21 RKSVVLRPEHKKLL-DRAEREDLHKALAEAMELVEQKNKNSFALEKLQEKLRLLEEKLAANDIALDELTDSFEESLRRHQQLTNAALSPIRSEIGLLKDRLNDLTVLLKASSAPTGCGGGKQRLHRQQEQRE------GNFLGVEAIKSNVSHLTTVATALGMRAAYADKMGTENMDAATPAYIISDWSELSSK 208
            RK     P  +KL+ D +EREDL + +A  M LV+      F L++L EK++ LE K+ AN +A++ELTD+ E++L RHQQ T   L+P+++++  LK+ L  L  LL  S   +        L  Q+  +E          G  A+++  SHLTTVATALG++  + +   +   + + P+YIISDWSELS++
Sbjct:   37 RKMAPWSPRRQKLVPDSSEREDLSRVIAGKMALVDDSEDRKF-LKRLYEKVQCLETKILANQVAMEELTDTLEDALSRHQQQTAVTLTPLQNDVLQLKESLAALAALLDTSKTASAIPERSSELSEQKRAKEQGDDGGSGIFGTGAMETQFSHLTTVATALGIKPRFMEGGRSGCAEGSFPSYIISDWSELSTR 229
The following BLAST results are available for this feature:
BLAST of NO12G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25872.12.300e-2337.63hypothetical protein Naga_100054g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01560NO12G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01560.1NO12G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01560.1.cds1NO12G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01560.1 ID=NO12G01560.1|Name=NO12G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGGTTGTAACGACTTTGAGTATCTTGCTGCCGAGCAATTTGGGAAAGTG
TTTAAGCCGACGTAAATCTGTCGTCCTGAGACCCGAGCATAAGAAGCTAC
TCGACCGGGCGGAGCGCGAGGACCTGCACAAAGCCCTGGCCGAGGCTATG
GAGCTCGTGGAGCAAAAGAATAAGAATAGTTTTGCTTTGGAAAAACTGCA
GGAGAAGCTGCGATTGCTGGAGGAAAAGCTAGCGGCAAACGATATTGCCC
TGGACGAGCTCACAGATAGCTTTGAGGAGTCCTTGCGTCGGCACCAGCAG
CTGACGAACGCCGCTCTTTCGCCCATCAGGAGCGAGATCGGCCTGCTCAA
GGACCGGTTAAATGATCTCACAGTCTTGCTGAAGGCGAGCTCGGCACCGA
CCGGGTGCGGTGGAGGGAAACAGCGACTGCACCGGCAGCAGGAACAAAGG
GAGGGCAATTTTTTGGGAGTTGAGGCGATTAAAAGCAATGTTTCGCACCT
GACTACTGTGGCGACAGCTTTGGGGATGAGAGCTGCCTATGCAGATAAGA
TGGGGACAGAGAACATGGACGCGGCGACGCCTGCATACATAATTTCGGAT
TGGTCTGAGTTGTCCTCGAAATAA
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protein sequence of NO12G01560.1

>NO12G01560.1-protein ID=NO12G01560.1-protein|Name=NO12G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MVVTTLSILLPSNLGKCLSRRKSVVLRPEHKKLLDRAEREDLHKALAEAM
ELVEQKNKNSFALEKLQEKLRLLEEKLAANDIALDELTDSFEESLRRHQQ
LTNAALSPIRSEIGLLKDRLNDLTVLLKASSAPTGCGGGKQRLHRQQEQR
EGNFLGVEAIKSNVSHLTTVATALGMRAAYADKMGTENMDAATPAYIISD
WSELSSK*
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mRNA from alignment at chr12:474117..474740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01560.1 ID=NO12G01560.1|Name=NO12G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp|location=Sequence derived from alignment at chr12:474117..474740- (Nannochloropsis oceanica)
ATGGTTGTAACGACTTTGAGTATCTTGCTGCCGAGCAATTTGGGAAAGTG
TTTAAGCCGACGTAAATCTGTCGTCCTGAGACCCGAGCATAAGAAGCTAC
TCGACCGGGCGGAGCGCGAGGACCTGCACAAAGCCCTGGCCGAGGCTATG
GAGCTCGTGGAGCAAAAGAATAAGAATAGTTTTGCTTTGGAAAAACTGCA
GGAGAAGCTGCGATTGCTGGAGGAAAAGCTAGCGGCAAACGATATTGCCC
TGGACGAGCTCACAGATAGCTTTGAGGAGTCCTTGCGTCGGCACCAGCAG
CTGACGAACGCCGCTCTTTCGCCCATCAGGAGCGAGATCGGCCTGCTCAA
GGACCGGTTAAATGATCTCACAGTCTTGCTGAAGGCGAGCTCGGCACCGA
CCGGGTGCGGTGGAGGGAAACAGCGACTGCACCGGCAGCAGGAACAAAGG
GAGGGCAATTTTTTGGGAGTTGAGGCGATTAAAAGCAATGTTTCGCACCT
GACTACTGTGGCGACAGCTTTGGGGATGAGAGCTGCCTATGCAGATAAGA
TGGGGACAGAGAACATGGACGCGGCGACGCCTGCATACATAATTTCGGAT
TGGTCTGAGTTGTCCTCGAAATAA
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Coding sequence (CDS) from alignment at chr12:474117..474740-

>NO12G01560.1 ID=NO12G01560.1|Name=NO12G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr12:474117..474740- (Nannochloropsis oceanica)
ATGGTTGTAACGACTTTGAGTATCTTGCTGCCGAGCAATTTGGGAAAGTG
TTTAAGCCGACGTAAATCTGTCGTCCTGAGACCCGAGCATAAGAAGCTAC
TCGACCGGGCGGAGCGCGAGGACCTGCACAAAGCCCTGGCCGAGGCTATG
GAGCTCGTGGAGCAAAAGAATAAGAATAGTTTTGCTTTGGAAAAACTGCA
GGAGAAGCTGCGATTGCTGGAGGAAAAGCTAGCGGCAAACGATATTGCCC
TGGACGAGCTCACAGATAGCTTTGAGGAGTCCTTGCGTCGGCACCAGCAG
CTGACGAACGCCGCTCTTTCGCCCATCAGGAGCGAGATCGGCCTGCTCAA
GGACCGGTTAAATGATCTCACAGTCTTGCTGAAGGCGAGCTCGGCACCGA
CCGGGTGCGGTGGAGGGAAACAGCGACTGCACCGGCAGCAGGAACAAAGG
GAGGGCAATTTTTTGGGAGTTGAGGCGATTAAAAGCAATGTTTCGCACCT
GACTACTGTGGCGACAGCTTTGGGGATGAGAGCTGCCTATGCAGATAAGA
TGGGGACAGAGAACATGGACGCGGCGACGCCTGCATACATAATTTCGGAT
TGGTCTGAGTTGTCCTCGAAATAA
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Synonyms
Publications