NO12G01520.4, NO12G01520.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01520.4
Unique NameNO12G01520.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1490
Alignment locationchr12:465020..467547 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:465020..467547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01520.4 vs.
Match: EWM25858.1 (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 328.9 bits (842), Expect = 1.300e-86
Identity = 164/220 (74.55%), Postives = 192/220 (87.27%), Query Frame = 0 
Query:   13 SRSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPESVPLEDVRQVGVLMTVRLSEKTDKQIKCEMMRLLPPT 233
            SRSK +Q++TLLQ LRPGMRLHGGVVGVT+FAAFLDVKVVR+GPGGKLVRCNAMLHPHDVP G  L+RD+        QP PLETDP VIRRGIHV+VYVKDVFPNSGRFSVTLDP++DK KV+ AR+QKR L KKRNKVKKLEGVEEG EK+A+VVKLLRTALL+DIG+PVPAFLPH+ IP++VPLE +R +G L+ VR+ E+TD+QIKCEM+ + PP+
Sbjct:   94 SRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDS------HNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPS 307
The following BLAST results are available for this feature:
BLAST of NO12G01520.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25858.11.300e-8674.55Nucleic acid-binding protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01520NO12G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01520.4NO12G01520.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01520.4.cds1NO12G01520.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01520.4.cds2NO12G01520.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01520.4.cds3NO12G01520.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01520.4.cds4NO12G01520.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01520.4 ID=NO12G01520.4|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp
CTCAAGGCAGCTCTTCACCATACATTCTTTCTTTTGCTATCGCCTCACAT
TTTGTACACGCTCACAACATACACAAGCACAAGGCATCCATGCAGCAAAG
AAGACACACCTCTGCCCAAGTGGCAGCGCTGCTCGTCCTTCTCCTTGTTC
CTACCACCCCGTTCCTCTTCAAGCCTGCTCCGTCCACTCACATGGCCCGC
CAGCACAAACGTCCTCTGATAAAGCAATACGCAAATGATTTGGAAGGGGA
AGGCGCAAAACCCACCACCACGATCGAGATTCATCCTCCCCTCCCTGCTG
CTGTCCAGGTGGAGGCAGAAGTGGAAGCGGCAAGGTAAGAAGAGGACGAG
GACAGTATCCATTCCGAATCGCGCACCAATATTTGTGTCTCTATCGGTGG
CTAGCATGAGCAGGTGGTTCAGCCCTTCTCCCGTATCATTACCTCTGGCC
CCCTCCTTCACCAGCCGCAGCAGGCTTGAGCATCGGCCCCGTTCACTCCC
ATCTTATCTTATGACTCGAAAGCATAGGCCACTCCTGATACATACTCCTC
ATGACCAACCCTCCATTCCTCATTACTACCCTTTATTCCAGGTCCAAACA
CGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTC
ATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAA
GTGGTGCGAAAAGGACCCGGTGGGAAGCTGGTCCGCTGCAACGCCATGCT
CCATCCCCACGACGTGCCCCCCGGCACCACTCTCATCCGTGACGCTCCCC
CTGGCCAAGCCCGTCAACAGCAACCCACGCCTCTCGAGACCGACCCCGCA
GTCATCCGTCGCGGTATCCATGTCACCGTGTACGTCAAGGACGTTTTCCC
CAACTCCGGGAGGTTCTCGGTCACGCTCGACCCGACCGTGGACAAACAAA
AGGTGGTGATCGCTCGAAGGCAGAAGCGAGAATTGAGCAAGAAGAGGAAC
AAGGTTAAAAAGCTGGAGGGGGTCGAGGAAGGATTGGAGAAGAAGGCGCA
AGTTGTGAAGCTTTTGCGGACAGCCTTGCTGGTCGATATTGGTCTACCCG
TGCCAGCCTTTCTTCCACATAGCAGCATCCCAGAATCGGTGCCCTTGGAG
GACGTGCGTCAAGTAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGAC
GGACAAGCAAATCAAATGTGAGATGATGAGGCTCTTACCCCCCACATCTA
CAGCGCCAGGCAGGGTGGATGAGTGATGAGTGAAATAAGAAGTACCACAT
GTCACACAAAGGACGACGACGACGATGTTGTTTAGTGAAGATATCAAGGA
AAAGGTGGTAGAAAAAGCACACGCACGGTATCAAAATCGAAAGACAAGAT
ACGTAAACCCTTAAAGCAAGTGGAGAAGAAAAAGATATGAAGCCATGAAC
GAACAAACAAACACAAAAACAAAAACAAAAACAACTTCCA
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protein sequence of NO12G01520.4

>NO12G01520.4-protein ID=NO12G01520.4-protein|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MTNPPFLITTLYSRSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVK
VVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPA
VIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRN
KVKKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPESVPLE
DVRQVGVLMTVRLSEKTDKQIKCEMMRLLPPTSTAPGRVDE*
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mRNA from alignment at chr12:465020..467547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01520.4 ID=NO12G01520.4|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=mRNA|length=2528bp|location=Sequence derived from alignment at chr12:465020..467547- (Nannochloropsis oceanica)
CTCAAGGCAGCTCTTCACCATACATTCTTTCTTTTGCTATCGCCTCACAT
TTTGTACACGCTCACAACATACACAAGCACAAGGCATCCATGCAGCAAAG
AAGACACACCTCTGCCCAAGTGGCAGCGCTGCTCGTCCTTCTCCTTGTTC
CTACCACCCCGTTCCTCTTCAAGCCTGCTCCGTCCACTCACATGGCCCGC
CAGCACAAACGTCCTCTGATAAAGCAATACGCAAATGATTTGGAAGGGGA
AGGCGCAAAACCCACCACCACGATCGAGATTCATCCTCCCCTCCCTGCTG
CTGTCCAGGTGGAGGCAGAAGTGGAAGCGGCAAGGTAAGAAGAGGACGAG
GACAGTATCCATTCCGAATCGCGCACCAATATTTGTGTCTCTATCGGTGG
CTAGCATGAGCAGGTGGTTCAGCCCTTCTCCCGTATCATTACCTCTGGCC
CCCTCCTTCACCAGCCGCAGCAGGCTTGAGCATCGGCCCCGTTCACTCCC
ATCTTATCTTATGACTCGAAAGCATAGGCCACTCCTGATACATACTCCTC
ATGACCAACCCTCCATTCCTCATTACTACCCTTTATTCCAGGTCCAAACA
CGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTC
ATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAA
GTGGTGCGAAAAGGACCCGGTGGGAAGGTGAGTGCTGCAGTGCATCGGCT
ATGGAAAAGGAGATAGGGGAACGGAAAATGAAGGAAGGAGGGGGAAAAGA
GACAATTGTGTAGAGTAGGCATGCTGGATTATGCAGCTTTTTTTGTGGTG
GAGGGTGTGCGGCATGGGCCAGGAGGGAAGCAGAGCGTCGATACAAAGAG
AAGGAAGAAATGGAGAAAAGAGAGGAAAGGGGTATGAGAATGTCCATGAG
CGAAGCACCCGCGCTACAGACAATGCATGCAATGGATGCATGCAGTCTGG
CCCGCAGGTTACCAATGCCGTCAGTCGCTCAACCTGCGGTCGTATCAACG
CCAGACTCTCATCCAATTAATTAAAGGCGGGCCTTTCTGCAAGCTCGAGG
CGTGCAGCTACAACGCCATCCGCCTGCACCATCGCTTTTCCGCTTTTTCC
CTCTCTCCACGTTTGGGCCTGTAACAGATGGTATTATTTAAAGCCGTGCG
TTTACCTCTTCACCCCCCATCCTCCCTCCCACCCTCCCTCCCCTCCCTGC
AGCTGGTCCGCTGCAACGCCATGCTCCATCCCCACGACGTGCCCCCCGGC
ACCACTCTCATCCGTGACGCTCCCCCTGGCCAAGCCCGTCAACAGCAACC
CACGCCTCTCGAGACCGACCCCGCAGTCATCCGTCGCGGTATCCATGTCA
CCGTGTACGTCAAGGACGTTTTCCCCAACTCCGGGAGGTTCTCGGTCACG
CTCGACCCGACCGTGGACAAACAAAAGGTGGTGATCGCTCGAAGGCAGAA
GCGAGAATTGAGCAAGAAGAGGAACAAGGTTAAAAAGCTGGAGGGGGTCG
AGGAAGGATTGGAGAAGAAGGCGCAAGTTGTGAAGGTATGTGGTTGAGAG
GGAGGAAGGGAAGGAGGGAGGGGCACGTTATGGCTTGGTTAAAAGGGGGC
TGTGATGTTATTAGACGAGAACAGCAATATGTCAAAGAATATAGGGGATA
GGGACGGAGGGAGGGGTGAAGGGACGGAGGAGGGAATCGAATTTCTCTAT
TTTCCAATTTGTAGAAGTCCACAATTTCTTCCATTCATTTTCACCTTTTT
GTTGACACGCAACACCAACACCGCACAGCTTTTGCGGACAGCCTTGCTGG
TCGATATTGGTCTACCCGTGCCAGCCTTTCTTCCACATAGCAGCATCCCA
GAATCGGTGCCCTTGGAGGTGCGTCTGTGTCTGTGTGGATTTGTGGATAT
CTGGGGGGGGGTGCTTGCTCGTCGTCGTGTTTCTGGCTGTTTTTTTTTTT
CCTCCCGGGCATTTCACCAGGTATCATGATTTGACACCAAGAGTCGAATC
AGTGCACGACAGTTATATCCACATGCTTCATCATCATATTTGCACTTATT
TGGACAACGCGACTGACCTCCTGTCCCCCTTCCCTTTCCTTCCTCTTCCC
CTTTTTTCCTCCTGTTGCCCCCTCTCTCAAAAACAAAGGACGTGCGTCAA
GTAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGACGGACAAGCAAAT
CAAATGTGAGATGATGAGGCTCTTACCCCCCACATCTACAGCGCCAGGCA
GGGTGGATGAGTGATGAGTGAAATAAGAAGTACCACATGTCACACAAAGG
ACGACGACGACGATGTTGTTTAGTGAAGATATCAAGGAAAAGGTGGTAGA
AAAAGCACACGCACGGTATCAAAATCGAAAGACAAGATACGTAAACCCTT
AAAGCAAGTGGAGAAGAAAAAGATATGAAGCCATGAACGAACAAACAAAC
ACAAAAACAAAAACAAAAACAACTTCCA
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Coding sequence (CDS) from alignment at chr12:465020..467547-

>NO12G01520.4 ID=NO12G01520.4|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr12:465020..467547- (Nannochloropsis oceanica)
ATGACCAACCCTCCATTCCTCATTACTACCCTTTATTCCAGGTCCAAACA
CGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTC
ATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAA
GTGGTGCGAAAAGGACCCGGTGGGAAGCTGGTCCGCTGCAACGCCATGCT
CCATCCCCACGACGTGCCCCCCGGCACCACTCTCATCCGTGACGCTCCCC
CTGGCCAAGCCCGTCAACAGCAACCCACGCCTCTCGAGACCGACCCCGCA
GTCATCCGTCGCGGTATCCATGTCACCGTGTACGTCAAGGACGTTTTCCC
CAACTCCGGGAGGTTCTCGGTCACGCTCGACCCGACCGTGGACAAACAAA
AGGTGGTGATCGCTCGAAGGCAGAAGCGAGAATTGAGCAAGAAGAGGAAC
AAGGTTAAAAAGCTGGAGGGGGTCGAGGAAGGATTGGAGAAGAAGGCGCA
AGTTGTGAAGCTTTTGCGGACAGCCTTGCTGGTCGATATTGGTCTACCCG
TGCCAGCCTTTCTTCCACATAGCAGCATCCCAGAATCGGTGCCCTTGGAG
GACGTGCGTCAAGTAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGAC
GGACAAGCAAATCAAATGTGAGATGATGAGGCTCTTACCCCCCACATCTA
CAGCGCCAGGCAGGGTGGATGAGTGA
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Synonyms
Publications