NO12G01510.1, NO12G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01510.1
Unique NameNO12G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1836
Alignment locationchr12:463042..464992 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:463042..464992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01510.1 vs.
Match: XP_018909146.1 (PREDICTED: uncharacterized protein LOC109038526 [Bemisia tabaci])

HSP 1 Score: 111.7 bits (278), Expect = 7.000e-21
Identity = 96/304 (31.58%), Postives = 127/304 (41.78%), Query Frame = 0
Query:  229 STKRSKVSTVFKCSR-----------CQKKLTAVHHSVLENRNFQDIFLAFVVEWMAGRVGCEWLANEYGCSKNTPTEIFDMFRQVASWVVIGP--LHPACRRGESHFKMGGPGLCVEIDEAKFAKRKYGRGRRGAAQRKGWVLGAVLRKKPQAKRTQGLCIFRPIFHGRRDKSTVMRFIRKYVRRGTHIMTDEARCYAGLRREGYLHSTVNHSRGQFVVYGSDDPRVRASRIVHTQTIEGTWKWARAKGIPVCGIKGKDLHYNRRLAEVCYMRLLQNHPKWEHKDPVKIFLKHLAAWYNAGQP 520
            S  R     VF+C +           C  K +   ++  EN N+  +    +  W        WL  +         E       V  W       L   C R  +   +GGPG  VEIDE KF KRKY RGRR   Q   WV G  LR  P+      +    P+   RRDK T++  I++ ++ GT I++D  + Y  L  EGY H TVNH+      Y   DP   A    HTQ IE  W+  RA+ IP  G   KD H+   LAE  + R   +H    H+     FLK  A  Y   +P
Sbjct:   77 SVNRDGKKLVFRCRKKVTVKKKKKKCCNYKASIFKNTYFENSNWT-VKKVLIAAW-------HWLTRDPPRQNFIRKETKGSKATVVDWASFNREVLLDWCDRNSAKDLIGGPGEEVEIDEEKFGKRKYNRGRRVKGQ---WVFGGTLRSDPK------VIFLEPV--ERRDKETLLEIIQRRIKPGTCILSDCWKSYDCLWDEGYTHFTVNHT------YSFVDPETGA----HTQHIERAWREVRAR-IPRYG--RKDAHFVGYLAEFMFKRSFPDHTVRLHE-----FLKAAANLYPPIRP 343          
The following BLAST results are available for this feature:
BLAST of NO12G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_018909146.17.000e-2131.58PREDICTED: uncharacterized protein LOC109038526 [B... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01510NO12G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01510.1NO12G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01510.1.cds1NO12G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01510.1.cds2NO12G01510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01510.1 ID=NO12G01510.1|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp
CTGGGGCTTTGTGCGGGCTTTGGTTGGTATTCACTGCCTCTTTCTATCAA
ATTTCTGGTAAAATTTATATACTTAATATAACTTGCCAATTATGACCACA
GGGTGAATTTGGGTGCAAGCTCTCGCTCTAAAAAGCACTCAGCACTTGCG
CGCGCGGGGGAAATTTTCCGCCATCCTCTTAATCCTTGCAGCAGAGCTTT
GCCCGCCTTCATCCCCCAGACACCCATGCCGGCCCCAAATTCGGACCCTA
AATTTGGAGACCTGGGAAGCCATCGCTTCTGCAATCCTGACAGGCCGCTT
TTTGCTGATCTGGAGGGAATTTTAGCAACCCTCAGGGGTGATGAGGGAGC
TAACAAGCGTGTGAACGCACGAGTGCTCAACGTAAAAACGCAGCCTGGCG
CTAAAGCAGTGCTGGAGGAGATCTTGGACGAGAAGACGTGCATGACTCTA
ACTACCGCAAAGGCCCTTGGGCGGGACCCCGATCTCCTCCTTCTGCGGCA
CCAGTTTCTGGTAAACATAGGCCTCATCCCCAACAAGCAACCCATTTGCC
ACTGTGACAGTGCGTATCCTAAAAAGATGCGCCCTGTAAATTTGCGCACG
AAGGATGGATCAGCCAAGCAGATGCAAGCTGCTTTGGGGGTGCGGGACCT
GAAGGCGGCGTGTGCTGCTAAGGCGAAACGTATGAAAAATCTGAAGAGCC
TCTATGACCGGGCGAAGGTGCTCTTCGAGCGGGCTTCTAGGGCTCGCAGA
CCGGAGCTCAAGGCGCAGTACGCGACACAGGCCGCTGCGTTACATTCACA
GGCAGGTAAGGGCATTAACTCCGTGGCCAAGGACCTCGACCAGGATGCCC
CAGCGGCCGGGGGGGTGGTGGAGATTACCCATGGCCCTGAACCGGCCACG
AAGTACGGGTCTACCAAGCGAAGTAAGGTGTCCACCGTCTTCAAGTGCTC
TCGGTGCCAGAAGAAGCTCACTGCGGTGCACCACAGCGTGCTGGAGAACC
GCAACTTCCAGGATATCTTCCTTGCTTTTGTGGTGGAATGGATGGCTGGA
CGTGTGGGGTGCGAGTGGCTGGCCAACGAGTACGGGTGCAGCAAAAACAC
GCCGACGGAAATCTTCGATATGTTCCGGCAGGTGGCCTCATGGGTCGTAA
TCGGACCGCTGCATCCAGCATGCCGGCGTGGAGAGTCTCATTTCAAGATG
GGCGGCCCGGGTTTGTGCGTGGAGATCGATGAGGCGAAGTTCGCCAAAAG
AAAGTACGGTCGAGGCCGTCGAGGAGCCGCCCAGCGGAAAGGATGGGTGC
TTGGGGCCGTGCTGCGGAAGAAGCCGCAGGCGAAACGCACGCAGGGTCTT
TGCATCTTTCGGCCTATATTCCATGGCCGCCGTGACAAGTCCACGGTCAT
GCGCTTCATTCGGAAGTACGTACGCCGTGGCACGCACATCATGACGGACG
AGGCGCGGTGCTATGCAGGGCTGCGGCGGGAAGGCTACCTGCACAGCACT
GTCAATCACAGCCGGGGTCAGTTTGTGGTCTATGGTTCGGATGACCCCCG
CGTCCGGGCCTCCCGAATCGTTCACACACAGACGATCGAGGGGACGTGGA
AGTGGGCCCGCGCAAAGGGCATCCCCGTCTGTGGTATCAAGGGAAAGGAC
TTGCATTACAACCGGCGTCTGGCGGAGGTCTGCTACATGCGGCTGCTTCA
AAACCACCCTAAGTGGGAGCATAAGGATCCGGTGAAGATCTTTTTGAAGC
ATCTCGCTGCCTGGTATAACGCTGGCCAGCCGGACGTGGCTAAGGAGATG
TAGATAATGTGTGGGGATGAGAGAGGAGGATGCGGG
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protein sequence of NO12G01510.1

>NO12G01510.1-protein ID=NO12G01510.1-protein|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MPAPNSDPKFGDLGSHRFCNPDRPLFADLEGILATLRGDEGANKRVNARV
LNVKTQPGAKAVLEEILDEKTCMTLTTAKALGRDPDLLLLRHQFLVNIGL
IPNKQPICHCDSAYPKKMRPVNLRTKDGSAKQMQAALGVRDLKAACAAKA
KRMKNLKSLYDRAKVLFERASRARRPELKAQYATQAAALHSQAGKGINSV
AKDLDQDAPAAGGVVEITHGPEPATKYGSTKRSKVSTVFKCSRCQKKLTA
VHHSVLENRNFQDIFLAFVVEWMAGRVGCEWLANEYGCSKNTPTEIFDMF
RQVASWVVIGPLHPACRRGESHFKMGGPGLCVEIDEAKFAKRKYGRGRRG
AAQRKGWVLGAVLRKKPQAKRTQGLCIFRPIFHGRRDKSTVMRFIRKYVR
RGTHIMTDEARCYAGLRREGYLHSTVNHSRGQFVVYGSDDPRVRASRIVH
TQTIEGTWKWARAKGIPVCGIKGKDLHYNRRLAEVCYMRLLQNHPKWEHK
DPVKIFLKHLAAWYNAGQPDVAKEM*
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mRNA from alignment at chr12:463042..464992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01510.1 ID=NO12G01510.1|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp|location=Sequence derived from alignment at chr12:463042..464992+ (Nannochloropsis oceanica)
CTGGGGCTTTGTGCGGGCTTTGGTTGGTATTCACTGCCTCTTTCTATCAA ATTTCTGGTAAAATTTATATACTTAATATAACTTGCCAATTATGACCACA GGGTGAATTTGGGTGCAAGCTCTCGCTCTAAAAAGCACTCAGCACTTGCG CGCGCGGGGGAAATTTTCCGCCATCCTCTTAATCCTTGCAGCAGAGCTTT GCCCGCCTTCATCCCCCAGACACCCATGCCGGCCCCAAATTCGGACCCTA AATTTGGAGACCTGGGAAGCCATCGCTTCTGCAATCCTGACAGGCCGCTT TTTGCTGATCTGGAGGGAATTTTAGCAACCCTCAGGGGTGATGAGGGAGC TAACAAGCGTGTGAACGCACGAGTGCTCAACGTAAAAACGCAGCCTGGCG CTAAAGCAGTGCTGGAGGAGATCTTGGACGAGAAGACGTGCATGACTCTA ACTACCGCAAAGGCCCTTGGGCGGGACCCCGATCTCCTCCTTCTGCGGCA CCAGTTTCTGGTAAACATAGGCCTCATCCCCAACAAGCAACCCATTTGCC ACTGTGACAGTGCGTATCCTAAAAAGATGCGCCCTGTAAATTTGCGCACG AAGGATGGATCAGCCAAGCAGATGCAAGCTGCTTTGGGGGTGCGGGACCT GAAGGCGGCGTGTGCTGCTAAGGCGAAACGTATGAAAAATCTGAAGAGCC TCTATGACCGGGCGAAGGTGCTCTTCGAGCGGGCTTCTAGGGCTCGCAGA CCGGAGCTCAAGGCGCAGTACGCGACACAGGCCGCTGCGTTACATTCACA GGCAGGTAAGGGCATTAACTCCGTGGCCAAGGACCTCGACCAGGATGCCC CAGCGGCCGGGGGGGTGGTGGAGATTACCCATGGCCCTGAACCGGCCACG AAGTACGGGTCTACCAAGCGAAGTAAGGTGTCCACCGTCTTCAAGTAAGT TGCACAGCTGTAGTCTAGGGGTGAAAGGACAGATGTTGCATCTGCGGAAT GTAAGGACAAGTTTTATTGATAATTTCCTCGAATATTCTCTTCACTCTTA ATCGCGCAGGTGCTCTCGGTGCCAGAAGAAGCTCACTGCGGTGCACCACA GCGTGCTGGAGAACCGCAACTTCCAGGATATCTTCCTTGCTTTTGTGGTG GAATGGATGGCTGGACGTGTGGGGTGCGAGTGGCTGGCCAACGAGTACGG GTGCAGCAAAAACACGCCGACGGAAATCTTCGATATGTTCCGGCAGGTGG CCTCATGGGTCGTAATCGGACCGCTGCATCCAGCATGCCGGCGTGGAGAG TCTCATTTCAAGATGGGCGGCCCGGGTTTGTGCGTGGAGATCGATGAGGC GAAGTTCGCCAAAAGAAAGTACGGTCGAGGCCGTCGAGGAGCCGCCCAGC GGAAAGGATGGGTGCTTGGGGCCGTGCTGCGGAAGAAGCCGCAGGCGAAA CGCACGCAGGGTCTTTGCATCTTTCGGCCTATATTCCATGGCCGCCGTGA CAAGTCCACGGTCATGCGCTTCATTCGGAAGTACGTACGCCGTGGCACGC ACATCATGACGGACGAGGCGCGGTGCTATGCAGGGCTGCGGCGGGAAGGC TACCTGCACAGCACTGTCAATCACAGCCGGGGTCAGTTTGTGGTCTATGG TTCGGATGACCCCCGCGTCCGGGCCTCCCGAATCGTTCACACACAGACGA TCGAGGGGACGTGGAAGTGGGCCCGCGCAAAGGGCATCCCCGTCTGTGGT ATCAAGGGAAAGGACTTGCATTACAACCGGCGTCTGGCGGAGGTCTGCTA CATGCGGCTGCTTCAAAACCACCCTAAGTGGGAGCATAAGGATCCGGTGA AGATCTTTTTGAAGCATCTCGCTGCCTGGTATAACGCTGGCCAGCCGGAC GTGGCTAAGGAGATGTAGATAATGTGTGGGGATGAGAGAGGAGGATGCGG G
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Coding sequence (CDS) from alignment at chr12:463042..464992+

>NO12G01510.1 ID=NO12G01510.1|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr12:463042..464992+ (Nannochloropsis oceanica)
ATGCCGGCCCCAAATTCGGACCCTAAATTTGGAGACCTGGGAAGCCATCG
CTTCTGCAATCCTGACAGGCCGCTTTTTGCTGATCTGGAGGGAATTTTAG
CAACCCTCAGGGGTGATGAGGGAGCTAACAAGCGTGTGAACGCACGAGTG
CTCAACGTAAAAACGCAGCCTGGCGCTAAAGCAGTGCTGGAGGAGATCTT
GGACGAGAAGACGTGCATGACTCTAACTACCGCAAAGGCCCTTGGGCGGG
ACCCCGATCTCCTCCTTCTGCGGCACCAGTTTCTGGTAAACATAGGCCTC
ATCCCCAACAAGCAACCCATTTGCCACTGTGACAGTGCGTATCCTAAAAA
GATGCGCCCTGTAAATTTGCGCACGAAGGATGGATCAGCCAAGCAGATGC
AAGCTGCTTTGGGGGTGCGGGACCTGAAGGCGGCGTGTGCTGCTAAGGCG
AAACGTATGAAAAATCTGAAGAGCCTCTATGACCGGGCGAAGGTGCTCTT
CGAGCGGGCTTCTAGGGCTCGCAGACCGGAGCTCAAGGCGCAGTACGCGA
CACAGGCCGCTGCGTTACATTCACAGGCAGGTAAGGGCATTAACTCCGTG
GCCAAGGACCTCGACCAGGATGCCCCAGCGGCCGGGGGGGTGGTGGAGAT
TACCCATGGCCCTGAACCGGCCACGAAGTACGGGTCTACCAAGCGAAGTA
AGGTGTCCACCGTCTTCAAGTGCTCTCGGTGCCAGAAGAAGCTCACTGCG
GTGCACCACAGCGTGCTGGAGAACCGCAACTTCCAGGATATCTTCCTTGC
TTTTGTGGTGGAATGGATGGCTGGACGTGTGGGGTGCGAGTGGCTGGCCA
ACGAGTACGGGTGCAGCAAAAACACGCCGACGGAAATCTTCGATATGTTC
CGGCAGGTGGCCTCATGGGTCGTAATCGGACCGCTGCATCCAGCATGCCG
GCGTGGAGAGTCTCATTTCAAGATGGGCGGCCCGGGTTTGTGCGTGGAGA
TCGATGAGGCGAAGTTCGCCAAAAGAAAGTACGGTCGAGGCCGTCGAGGA
GCCGCCCAGCGGAAAGGATGGGTGCTTGGGGCCGTGCTGCGGAAGAAGCC
GCAGGCGAAACGCACGCAGGGTCTTTGCATCTTTCGGCCTATATTCCATG
GCCGCCGTGACAAGTCCACGGTCATGCGCTTCATTCGGAAGTACGTACGC
CGTGGCACGCACATCATGACGGACGAGGCGCGGTGCTATGCAGGGCTGCG
GCGGGAAGGCTACCTGCACAGCACTGTCAATCACAGCCGGGGTCAGTTTG
TGGTCTATGGTTCGGATGACCCCCGCGTCCGGGCCTCCCGAATCGTTCAC
ACACAGACGATCGAGGGGACGTGGAAGTGGGCCCGCGCAAAGGGCATCCC
CGTCTGTGGTATCAAGGGAAAGGACTTGCATTACAACCGGCGTCTGGCGG
AGGTCTGCTACATGCGGCTGCTTCAAAACCACCCTAAGTGGGAGCATAAG
GATCCGGTGAAGATCTTTTTGAAGCATCTCGCTGCCTGGTATAACGCTGG
CCAGCCGGACGTGGCTAAGGAGATGTAG
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Synonyms
Publications