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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:463042..464992 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01510.1 vs.
Match: XP_018909146.1 (PREDICTED: uncharacterized protein LOC109038526 [Bemisia tabaci]) HSP 1 Score: 111.7 bits (278), Expect = 7.000e-21 Identity = 96/304 (31.58%), Postives = 127/304 (41.78%), Query Frame = 0
Query: 229 STKRSKVSTVFKCSR-----------CQKKLTAVHHSVLENRNFQDIFLAFVVEWMAGRVGCEWLANEYGCSKNTPTEIFDMFRQVASWVVIGP--LHPACRRGESHFKMGGPGLCVEIDEAKFAKRKYGRGRRGAAQRKGWVLGAVLRKKPQAKRTQGLCIFRPIFHGRRDKSTVMRFIRKYVRRGTHIMTDEARCYAGLRREGYLHSTVNHSRGQFVVYGSDDPRVRASRIVHTQTIEGTWKWARAKGIPVCGIKGKDLHYNRRLAEVCYMRLLQNHPKWEHKDPVKIFLKHLAAWYNAGQP 520
S R VF+C + C K + ++ EN N+ + + W WL + E V W L C R + +GGPG VEIDE KF KRKY RGRR Q WV G LR P+ + P+ RRDK T++ I++ ++ GT I++D + Y L EGY H TVNH+ Y DP A HTQ IE W+ RA+ IP G KD H+ LAE + R +H H+ FLK A Y +P
Sbjct: 77 SVNRDGKKLVFRCRKKVTVKKKKKKCCNYKASIFKNTYFENSNWT-VKKVLIAAW-------HWLTRDPPRQNFIRKETKGSKATVVDWASFNREVLLDWCDRNSAKDLIGGPGEEVEIDEEKFGKRKYNRGRRVKGQ---WVFGGTLRSDPK------VIFLEPV--ERRDKETLLEIIQRRIKPGTCILSDCWKSYDCLWDEGYTHFTVNHT------YSFVDPETGA----HTQHIERAWREVRAR-IPRYG--RKDAHFVGYLAEFMFKRSFPDHTVRLHE-----FLKAAANLYPPIRP 343
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01510.1 ID=NO12G01510.1|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp CTGGGGCTTTGTGCGGGCTTTGGTTGGTATTCACTGCCTCTTTCTATCAA ATTTCTGGTAAAATTTATATACTTAATATAACTTGCCAATTATGACCACA GGGTGAATTTGGGTGCAAGCTCTCGCTCTAAAAAGCACTCAGCACTTGCG CGCGCGGGGGAAATTTTCCGCCATCCTCTTAATCCTTGCAGCAGAGCTTT GCCCGCCTTCATCCCCCAGACACCCATGCCGGCCCCAAATTCGGACCCTA AATTTGGAGACCTGGGAAGCCATCGCTTCTGCAATCCTGACAGGCCGCTT TTTGCTGATCTGGAGGGAATTTTAGCAACCCTCAGGGGTGATGAGGGAGC TAACAAGCGTGTGAACGCACGAGTGCTCAACGTAAAAACGCAGCCTGGCG CTAAAGCAGTGCTGGAGGAGATCTTGGACGAGAAGACGTGCATGACTCTA ACTACCGCAAAGGCCCTTGGGCGGGACCCCGATCTCCTCCTTCTGCGGCA CCAGTTTCTGGTAAACATAGGCCTCATCCCCAACAAGCAACCCATTTGCC ACTGTGACAGTGCGTATCCTAAAAAGATGCGCCCTGTAAATTTGCGCACG AAGGATGGATCAGCCAAGCAGATGCAAGCTGCTTTGGGGGTGCGGGACCT GAAGGCGGCGTGTGCTGCTAAGGCGAAACGTATGAAAAATCTGAAGAGCC TCTATGACCGGGCGAAGGTGCTCTTCGAGCGGGCTTCTAGGGCTCGCAGA CCGGAGCTCAAGGCGCAGTACGCGACACAGGCCGCTGCGTTACATTCACA GGCAGGTAAGGGCATTAACTCCGTGGCCAAGGACCTCGACCAGGATGCCC CAGCGGCCGGGGGGGTGGTGGAGATTACCCATGGCCCTGAACCGGCCACG AAGTACGGGTCTACCAAGCGAAGTAAGGTGTCCACCGTCTTCAAGTGCTC TCGGTGCCAGAAGAAGCTCACTGCGGTGCACCACAGCGTGCTGGAGAACC GCAACTTCCAGGATATCTTCCTTGCTTTTGTGGTGGAATGGATGGCTGGA CGTGTGGGGTGCGAGTGGCTGGCCAACGAGTACGGGTGCAGCAAAAACAC GCCGACGGAAATCTTCGATATGTTCCGGCAGGTGGCCTCATGGGTCGTAA TCGGACCGCTGCATCCAGCATGCCGGCGTGGAGAGTCTCATTTCAAGATG GGCGGCCCGGGTTTGTGCGTGGAGATCGATGAGGCGAAGTTCGCCAAAAG AAAGTACGGTCGAGGCCGTCGAGGAGCCGCCCAGCGGAAAGGATGGGTGC TTGGGGCCGTGCTGCGGAAGAAGCCGCAGGCGAAACGCACGCAGGGTCTT TGCATCTTTCGGCCTATATTCCATGGCCGCCGTGACAAGTCCACGGTCAT GCGCTTCATTCGGAAGTACGTACGCCGTGGCACGCACATCATGACGGACG AGGCGCGGTGCTATGCAGGGCTGCGGCGGGAAGGCTACCTGCACAGCACT GTCAATCACAGCCGGGGTCAGTTTGTGGTCTATGGTTCGGATGACCCCCG CGTCCGGGCCTCCCGAATCGTTCACACACAGACGATCGAGGGGACGTGGA AGTGGGCCCGCGCAAAGGGCATCCCCGTCTGTGGTATCAAGGGAAAGGAC TTGCATTACAACCGGCGTCTGGCGGAGGTCTGCTACATGCGGCTGCTTCA AAACCACCCTAAGTGGGAGCATAAGGATCCGGTGAAGATCTTTTTGAAGC ATCTCGCTGCCTGGTATAACGCTGGCCAGCCGGACGTGGCTAAGGAGATG TAGATAATGTGTGGGGATGAGAGAGGAGGATGCGGG back to topprotein sequence of NO12G01510.1 >NO12G01510.1-protein ID=NO12G01510.1-protein|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp MPAPNSDPKFGDLGSHRFCNPDRPLFADLEGILATLRGDEGANKRVNARV LNVKTQPGAKAVLEEILDEKTCMTLTTAKALGRDPDLLLLRHQFLVNIGL IPNKQPICHCDSAYPKKMRPVNLRTKDGSAKQMQAALGVRDLKAACAAKA KRMKNLKSLYDRAKVLFERASRARRPELKAQYATQAAALHSQAGKGINSV AKDLDQDAPAAGGVVEITHGPEPATKYGSTKRSKVSTVFKCSRCQKKLTA VHHSVLENRNFQDIFLAFVVEWMAGRVGCEWLANEYGCSKNTPTEIFDMF RQVASWVVIGPLHPACRRGESHFKMGGPGLCVEIDEAKFAKRKYGRGRRG AAQRKGWVLGAVLRKKPQAKRTQGLCIFRPIFHGRRDKSTVMRFIRKYVR RGTHIMTDEARCYAGLRREGYLHSTVNHSRGQFVVYGSDDPRVRASRIVH TQTIEGTWKWARAKGIPVCGIKGKDLHYNRRLAEVCYMRLLQNHPKWEHK DPVKIFLKHLAAWYNAGQPDVAKEM* back to topmRNA from alignment at chr12:463042..464992+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01510.1 ID=NO12G01510.1|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp|location=Sequence derived from alignment at chr12:463042..464992+ (Nannochloropsis oceanica) CTGGGGCTTTGTGCGGGCTTTGGTTGGTATTCACTGCCTCTTTCTATCAA
ATTTCTGGTAAAATTTATATACTTAATATAACTTGCCAATTATGACCACA
GGGTGAATTTGGGTGCAAGCTCTCGCTCTAAAAAGCACTCAGCACTTGCG
CGCGCGGGGGAAATTTTCCGCCATCCTCTTAATCCTTGCAGCAGAGCTTT
GCCCGCCTTCATCCCCCAGACACCCATGCCGGCCCCAAATTCGGACCCTA
AATTTGGAGACCTGGGAAGCCATCGCTTCTGCAATCCTGACAGGCCGCTT
TTTGCTGATCTGGAGGGAATTTTAGCAACCCTCAGGGGTGATGAGGGAGC
TAACAAGCGTGTGAACGCACGAGTGCTCAACGTAAAAACGCAGCCTGGCG
CTAAAGCAGTGCTGGAGGAGATCTTGGACGAGAAGACGTGCATGACTCTA
ACTACCGCAAAGGCCCTTGGGCGGGACCCCGATCTCCTCCTTCTGCGGCA
CCAGTTTCTGGTAAACATAGGCCTCATCCCCAACAAGCAACCCATTTGCC
ACTGTGACAGTGCGTATCCTAAAAAGATGCGCCCTGTAAATTTGCGCACG
AAGGATGGATCAGCCAAGCAGATGCAAGCTGCTTTGGGGGTGCGGGACCT
GAAGGCGGCGTGTGCTGCTAAGGCGAAACGTATGAAAAATCTGAAGAGCC
TCTATGACCGGGCGAAGGTGCTCTTCGAGCGGGCTTCTAGGGCTCGCAGA
CCGGAGCTCAAGGCGCAGTACGCGACACAGGCCGCTGCGTTACATTCACA
GGCAGGTAAGGGCATTAACTCCGTGGCCAAGGACCTCGACCAGGATGCCC
CAGCGGCCGGGGGGGTGGTGGAGATTACCCATGGCCCTGAACCGGCCACG
AAGTACGGGTCTACCAAGCGAAGTAAGGTGTCCACCGTCTTCAAGTAAGT
TGCACAGCTGTAGTCTAGGGGTGAAAGGACAGATGTTGCATCTGCGGAAT
GTAAGGACAAGTTTTATTGATAATTTCCTCGAATATTCTCTTCACTCTTA
ATCGCGCAGGTGCTCTCGGTGCCAGAAGAAGCTCACTGCGGTGCACCACA
GCGTGCTGGAGAACCGCAACTTCCAGGATATCTTCCTTGCTTTTGTGGTG
GAATGGATGGCTGGACGTGTGGGGTGCGAGTGGCTGGCCAACGAGTACGG
GTGCAGCAAAAACACGCCGACGGAAATCTTCGATATGTTCCGGCAGGTGG
CCTCATGGGTCGTAATCGGACCGCTGCATCCAGCATGCCGGCGTGGAGAG
TCTCATTTCAAGATGGGCGGCCCGGGTTTGTGCGTGGAGATCGATGAGGC
GAAGTTCGCCAAAAGAAAGTACGGTCGAGGCCGTCGAGGAGCCGCCCAGC
GGAAAGGATGGGTGCTTGGGGCCGTGCTGCGGAAGAAGCCGCAGGCGAAA
CGCACGCAGGGTCTTTGCATCTTTCGGCCTATATTCCATGGCCGCCGTGA
CAAGTCCACGGTCATGCGCTTCATTCGGAAGTACGTACGCCGTGGCACGC
ACATCATGACGGACGAGGCGCGGTGCTATGCAGGGCTGCGGCGGGAAGGC
TACCTGCACAGCACTGTCAATCACAGCCGGGGTCAGTTTGTGGTCTATGG
TTCGGATGACCCCCGCGTCCGGGCCTCCCGAATCGTTCACACACAGACGA
TCGAGGGGACGTGGAAGTGGGCCCGCGCAAAGGGCATCCCCGTCTGTGGT
ATCAAGGGAAAGGACTTGCATTACAACCGGCGTCTGGCGGAGGTCTGCTA
CATGCGGCTGCTTCAAAACCACCCTAAGTGGGAGCATAAGGATCCGGTGA
AGATCTTTTTGAAGCATCTCGCTGCCTGGTATAACGCTGGCCAGCCGGAC
GTGGCTAAGGAGATGTAGATAATGTGTGGGGATGAGAGAGGAGGATGCGG
G back to topCoding sequence (CDS) from alignment at chr12:463042..464992+ >NO12G01510.1 ID=NO12G01510.1|Name=NO12G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr12:463042..464992+ (Nannochloropsis oceanica) ATGCCGGCCCCAAATTCGGACCCTAAATTTGGAGACCTGGGAAGCCATCG CTTCTGCAATCCTGACAGGCCGCTTTTTGCTGATCTGGAGGGAATTTTAG CAACCCTCAGGGGTGATGAGGGAGCTAACAAGCGTGTGAACGCACGAGTG CTCAACGTAAAAACGCAGCCTGGCGCTAAAGCAGTGCTGGAGGAGATCTT GGACGAGAAGACGTGCATGACTCTAACTACCGCAAAGGCCCTTGGGCGGG ACCCCGATCTCCTCCTTCTGCGGCACCAGTTTCTGGTAAACATAGGCCTC ATCCCCAACAAGCAACCCATTTGCCACTGTGACAGTGCGTATCCTAAAAA GATGCGCCCTGTAAATTTGCGCACGAAGGATGGATCAGCCAAGCAGATGC AAGCTGCTTTGGGGGTGCGGGACCTGAAGGCGGCGTGTGCTGCTAAGGCG AAACGTATGAAAAATCTGAAGAGCCTCTATGACCGGGCGAAGGTGCTCTT CGAGCGGGCTTCTAGGGCTCGCAGACCGGAGCTCAAGGCGCAGTACGCGA CACAGGCCGCTGCGTTACATTCACAGGCAGGTAAGGGCATTAACTCCGTG GCCAAGGACCTCGACCAGGATGCCCCAGCGGCCGGGGGGGTGGTGGAGAT TACCCATGGCCCTGAACCGGCCACGAAGTACGGGTCTACCAAGCGAAGTA AGGTGTCCACCGTCTTCAAGTGCTCTCGGTGCCAGAAGAAGCTCACTGCG GTGCACCACAGCGTGCTGGAGAACCGCAACTTCCAGGATATCTTCCTTGC TTTTGTGGTGGAATGGATGGCTGGACGTGTGGGGTGCGAGTGGCTGGCCA ACGAGTACGGGTGCAGCAAAAACACGCCGACGGAAATCTTCGATATGTTC CGGCAGGTGGCCTCATGGGTCGTAATCGGACCGCTGCATCCAGCATGCCG GCGTGGAGAGTCTCATTTCAAGATGGGCGGCCCGGGTTTGTGCGTGGAGA TCGATGAGGCGAAGTTCGCCAAAAGAAAGTACGGTCGAGGCCGTCGAGGA GCCGCCCAGCGGAAAGGATGGGTGCTTGGGGCCGTGCTGCGGAAGAAGCC GCAGGCGAAACGCACGCAGGGTCTTTGCATCTTTCGGCCTATATTCCATG GCCGCCGTGACAAGTCCACGGTCATGCGCTTCATTCGGAAGTACGTACGC CGTGGCACGCACATCATGACGGACGAGGCGCGGTGCTATGCAGGGCTGCG GCGGGAAGGCTACCTGCACAGCACTGTCAATCACAGCCGGGGTCAGTTTG TGGTCTATGGTTCGGATGACCCCCGCGTCCGGGCCTCCCGAATCGTTCAC ACACAGACGATCGAGGGGACGTGGAAGTGGGCCCGCGCAAAGGGCATCCC CGTCTGTGGTATCAAGGGAAAGGACTTGCATTACAACCGGCGTCTGGCGG AGGTCTGCTACATGCGGCTGCTTCAAAACCACCCTAAGTGGGAGCATAAG GATCCGGTGAAGATCTTTTTGAAGCATCTCGCTGCCTGGTATAACGCTGG CCAGCCGGACGTGGCTAAGGAGATGTAG back to top
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