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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:429876..432011 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01390.1 vs.
Match: EWM25894.1 (retinitis pigmentosa gtpase regulator [Nannochloropsis gaditana]) HSP 1 Score: 802.7 bits (2072), Expect = 8.900e-229 Identity = 415/631 (65.77%), Postives = 465/631 (73.69%), Query Frame = 0
Query: 82 MPGLVVTVLSDAELEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSN-GSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRR---------QVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRRVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATG-SSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQ-DGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVVKVCCGWQHTVVLDDRGRVWTMGANKYGQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQVWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVWACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEGAARMLVACGGAHVLAV 701
MPGLVVTVLSD+ELE M +R+ATDPPSRVHGVAYRIPDE VA VLDELDFREKGGYTRAVVEV PT S+ G T I+ALLYTANA+NPNFHHP+TLEEAAHIVAWSRGPSGEN+EYLFE++AYLRR GAEC ETF LT RV+EVLE+GLDRRGSLDAR R+ LV + + G E G AVWQ+LRL AWGSNQHGQLG+R + V+T +D+EWP P PT V++DVA TVS Q GS A A +H L +RQLAAGGGHSAIVT EDRLYLWGWNE GQVGG K+ LDGT V VFPRRVAMVALGHAHTLVLEKDTGK+YG+G NAA EATG CRA+GG VTL GG + +RFSWC AGVRHSAGVT+ DGRLVTWG + G LP SVR WAP DG +V KV CGWQHTVVLDDRGRVWT+GANKYGQLG R + GLP+ V+WP GEG VE+VACGWSHVL KT DG++WGWGRNTFGQL E+ A + PR LL LPHG +V ++ CG+ESS LVG DGS+W CGWNEHGNLGVGD KDR WT V G G +MLVACGGAH LA+
Sbjct: 1 MPGLVVTVLSDSELETMGMREATDPPSRVHGVAYRIPDENVARVLDELDFREKGGYTRAVVEVKPTTSSTGGTDKSGRQEVIRALLYTANADNPNFHHPSTLEEAAHIVAWSRGPSGENREYLFEIEAYLRRAGAECPETFALTTRVEEVLERGLDRRGSLDARFRRDLVVVSGTQARGGTE---GIWAVWQRLRLHAWGSNQHGQLGKRAEAVGDGAFDLDMGVKTDKDDEWPLPQPTVVEVDVATTVSLQSGSRAQAADEHRLLVRQLAAGGGHSAIVTGEDRLYLWGWNEAGQVGGSKYATLDGTHRVHVFPRRVAMVALGHAHTLVLEKDTGKLYGVGGNAAGEATGVVMEQRKQCRAVGGGLVTLD----GGSDPIRFSWCDAGVRHSAGVTRDDGRLVTWGVGRSGACLPASVRGWAPVDGAKVRKVWCGWQHTVVLDDRGRVWTLGANKYGQLG-------RRGSQNDGLPELVEWPEGAGREGEGVRVEEVACGWSHVLVKTHDGEIWGWGRNTFGQLGSEA--VAEPETIGRDYLPRPLLKDKDRLPHGVQVDKVTCGSESSMLVGKDGSLWVCGWNEHGNLGVGDGKDRKSWTLVPGLSA--GSGGGKMLVACGGAHTLAM 613
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01390.1 ID=NO12G01390.1|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA back to topprotein sequence of NO12G01390.1 >NO12G01390.1-protein ID=NO12G01390.1-protein|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp MSTSTSTPSRQWDAAQGVWVGSRALADEADEIPDPLYIFGYGSLMFRPQE SFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDL RQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSN GSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENK EYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILV GTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQE DEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAI VTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRRVAMVALGHAHTL VLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQ LRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVV KVCCGWQHTVVLDDRGRVWTMGANKYGQLGWGWKEEMGREDEVAGLPQQV QWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQVWGWGRNTFGQLAQESR NTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVW ACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEGAARMLVACGGAHVLAV KERVGLQTEEK* back to topmRNA from alignment at chr12:429876..432011- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01390.1 ID=NO12G01390.1|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at chr12:429876..432011- (Nannochloropsis oceanica) ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG
TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG
ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA
AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG
GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG
GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA
CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT
TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA
AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC
GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA
CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG
AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG
GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG
CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG
GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT
GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG
TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC
ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA
GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC
CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC
ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC
GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA
AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG
TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG
GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC
AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG
GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG
CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC
GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC
TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG
AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG
GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA
AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC
CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA
TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG
TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG
AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT
ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG
CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG
GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA
CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG
GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA
AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA back to topCoding sequence (CDS) from alignment at chr12:429876..432011- >NO12G01390.1 ID=NO12G01390.1|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at chr12:429876..432011- (Nannochloropsis oceanica) ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA back to top
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