NO12G01390.1, NO12G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01390.1
Unique NameNO12G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2136
Alignment locationchr12:429876..432011 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:429876..432011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01390.1 vs.
Match: EWM25894.1 (retinitis pigmentosa gtpase regulator [Nannochloropsis gaditana])

HSP 1 Score: 802.7 bits (2072), Expect = 8.900e-229
Identity = 415/631 (65.77%), Postives = 465/631 (73.69%), Query Frame = 0
Query:   82 MPGLVVTVLSDAELEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSN-GSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRR---------QVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRRVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATG-SSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQ-DGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVVKVCCGWQHTVVLDDRGRVWTMGANKYGQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQVWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVWACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEGAARMLVACGGAHVLAV 701
            MPGLVVTVLSD+ELE M +R+ATDPPSRVHGVAYRIPDE VA VLDELDFREKGGYTRAVVEV PT S+ G T        I+ALLYTANA+NPNFHHP+TLEEAAHIVAWSRGPSGEN+EYLFE++AYLRR GAEC ETF LT RV+EVLE+GLDRRGSLDAR R+ LV  +  +  G  E   G  AVWQ+LRL AWGSNQHGQLG+R          +   V+T +D+EWP P PT V++DVA TVS Q GS A A  +H L +RQLAAGGGHSAIVT EDRLYLWGWNE GQVGG K+  LDGT  V VFPRRVAMVALGHAHTLVLEKDTGK+YG+G NAA EATG        CRA+GG  VTL     GG + +RFSWC AGVRHSAGVT+ DGRLVTWG  + G  LP SVR WAP DG +V KV CGWQHTVVLDDRGRVWT+GANKYGQLG        R  +  GLP+ V+WP      GEG  VE+VACGWSHVL KT DG++WGWGRNTFGQL  E+   A       +  PR LL     LPHG +V ++ CG+ESS LVG DGS+W CGWNEHGNLGVGD KDR  WT V G       G  +MLVACGGAH LA+
Sbjct:    1 MPGLVVTVLSDSELETMGMREATDPPSRVHGVAYRIPDENVARVLDELDFREKGGYTRAVVEVKPTTSSTGGTDKSGRQEVIRALLYTANADNPNFHHPSTLEEAAHIVAWSRGPSGENREYLFEIEAYLRRAGAECPETFALTTRVEEVLERGLDRRGSLDARFRRDLVVVSGTQARGGTE---GIWAVWQRLRLHAWGSNQHGQLGKRAEAVGDGAFDLDMGVKTDKDDEWPLPQPTVVEVDVATTVSLQSGSRAQAADEHRLLVRQLAAGGGHSAIVTGEDRLYLWGWNEAGQVGGSKYATLDGTHRVHVFPRRVAMVALGHAHTLVLEKDTGKLYGVGGNAAGEATGVVMEQRKQCRAVGGGLVTLD----GGSDPIRFSWCDAGVRHSAGVTRDDGRLVTWGVGRSGACLPASVRGWAPVDGAKVRKVWCGWQHTVVLDDRGRVWTLGANKYGQLG-------RRGSQNDGLPELVEWPEGAGREGEGVRVEEVACGWSHVLVKTHDGEIWGWGRNTFGQLGSEA--VAEPETIGRDYLPRPLLKDKDRLPHGVQVDKVTCGSESSMLVGKDGSLWVCGWNEHGNLGVGDGKDRKSWTLVPGLSA--GSGGGKMLVACGGAHTLAM 613          
The following BLAST results are available for this feature:
BLAST of NO12G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25894.18.900e-22965.77retinitis pigmentosa gtpase regulator [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01390NO12G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01390.1NO12G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01390.1.cds1NO12G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01390.1 ID=NO12G01390.1|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG
TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG
ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA
AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG
GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG
GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA
CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT
TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA
AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC
GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA
CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG
AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG
GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG
CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG
GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT
GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG
TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC
ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA
GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC
CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC
ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC
GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA
AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG
TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG
GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC
AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG
GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG
CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC
GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC
TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG
AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG
GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA
AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC
CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA
TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG
TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG
AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT
ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG
CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG
GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA
CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG
GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA
AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA
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protein sequence of NO12G01390.1

>NO12G01390.1-protein ID=NO12G01390.1-protein|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MSTSTSTPSRQWDAAQGVWVGSRALADEADEIPDPLYIFGYGSLMFRPQE
SFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDL
RQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSN
GSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENK
EYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILV
GTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQE
DEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAI
VTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRRVAMVALGHAHTL
VLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQ
LRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVV
KVCCGWQHTVVLDDRGRVWTMGANKYGQLGWGWKEEMGREDEVAGLPQQV
QWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQVWGWGRNTFGQLAQESR
NTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVW
ACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEGAARMLVACGGAHVLAV
KERVGLQTEEK*
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mRNA from alignment at chr12:429876..432011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01390.1 ID=NO12G01390.1|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at chr12:429876..432011- (Nannochloropsis oceanica)
ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA
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Coding sequence (CDS) from alignment at chr12:429876..432011-

>NO12G01390.1 ID=NO12G01390.1|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at chr12:429876..432011- (Nannochloropsis oceanica)
ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG
TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG
ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA
AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG
GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG
GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA
CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT
TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA
AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC
GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA
CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG
AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG
GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG
CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG
GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT
GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG
TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC
ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA
GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC
CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC
ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC
GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA
AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG
TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG
GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC
AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG
GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG
CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC
GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC
TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG
AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG
GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA
AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC
CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA
TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG
TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG
AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT
ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG
CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG
GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA
CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG
GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA
AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA
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Synonyms
Publications