NO12G01370.1, NO12G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01370.1
Unique NameNO12G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr12:425168..427151 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:425168..427151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01370.1 vs.
Match: EWM25919.1 (GDP-L-fucose synthetase [Nannochloropsis gaditana])

HSP 1 Score: 622.5 bits (1604), Expect = 7.500e-175
Identity = 294/321 (91.59%), Postives = 311/321 (96.88%), Query Frame = 0 
Query:    1 MSKNNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            MSKNNKKVVL+TGGTGLVGKGIEDF S+DPIA E+E+Y+FLSSKDGDLRDKAQTYAIFEK+RPA V+HLAALVGGLFRNM +KVEFYREN+LINDNVMEACKD KVEKLVSCLSTC+FPDKTTYPIDE+MIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFN+QDGHVIPGL+HKCY AEQAGTDFTIWGSGKPLRQFIYSRDLAELI+WTMREYHSADPLILSVGEEDEVSIGTLA+TVAKAMEFKG VVFDT KADGQYKKTASN KLRSLRPDFRFT+IEEGL +TCAWFKENYATARK
Sbjct:  276 MSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
The following BLAST results are available for this feature:
BLAST of NO12G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25919.17.500e-17591.59GDP-L-fucose synthetase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01370NO12G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01370.1NO12G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01370.1.cds1NO12G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01370.1.cds2NO12G01370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01370.1.cds3NO12G01370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01370.1.cds4NO12G01370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01370.1.cds5NO12G01370.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01370.1.cds6NO12G01370.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01370.1 ID=NO12G01370.1|Name=NO12G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCCT
GGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGACCCCATCGCCACCG
AGACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGAT
AAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCAT
TCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAGG
TGGAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGCC
TGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTGT
GTTCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAATG
GGCCGCCCCATGCCTCTAATGAGGGGTACGCGTATGCCAAACGCATGCTC
GACGTCATGTCTCGCTGCTACAAGGAAGAATACGGCTGCAACTTCACCTC
CATCATTCCTACAAACATCTATGGTCCCCATGATAACTTCAATGTCCAAG
ACGGACACGTCATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAGCAG
GCGGGCACAGATTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCAGTT
CATTTACTCCCGGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCGAGT
ATCACTCCGCGGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGTG
TCCATCGGGACCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGGG
CAAGGTGGTGTTCGACACCGACAAGGCCGATGGCCAGTACAAGAAGACTG
CCAGCAACGCCAAGCTCCGTTCCCTCCGTCCAGACTTCCGCTTCACGACC
ATAGAGGAGGGACTTGCCCAGACCTGTGCTTGGTTCAAGGAGAATTACGC
GACTGCCCGAAAGTAA
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protein sequence of NO12G01370.1

>NO12G01370.1-protein ID=NO12G01370.1-protein|Name=NO12G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSKNNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRD
KAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEA
CKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRML
DVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQ
AGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEV
SIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTT
IEEGLAQTCAWFKENYATARK*
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mRNA from alignment at chr12:425168..427151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01370.1 ID=NO12G01370.1|Name=NO12G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at chr12:425168..427151+ (Nannochloropsis oceanica)
ATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCCT
GGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGGTAAGTTGGGGACGG
AGTATATAAAGGGCGTCGAGAAAGCGTTGACGTGAATCTGGAGGAGTGGT
GGCGTCACCCCAAGCCTTAAAAAGCGCATGCAAATGAATCTAGCGGTACC
ACCTGAATCAAGTGATGGTTTTTGACTCCCTTCGCCTGTGGCCTATGTCT
CCTGCTTTTCCACACGATGCTTAACACGATTTCCTCCTTGCCTTCCTCCC
TCCCTCCCTTTCCTCTTTTCATTCCTCATTCGTAGACCCCATCGCCACCG
AGACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGAT
AAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCAT
TCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAGG
TGGAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGCC
TGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTGT
GTTCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAATG
GGCCGCCCCATGCCTCTAATGAGGGTAAGCGAAGGAGGGAAGGAGCGAAG
GAGGAAGGAGGGAAGGAGTGCAGGGAGAACTGATTCGAGGCGGCAACATT
CTGTAAGCGTGGCAACCGTCCTGACATTTGATTTATCCTCCCTCCCTCCC
TCCCTCTCTCCCTCCTTATCAGGGTACGCGTATGCCAAACGCATGCTCGA
CGTCATGTCTCGCTGCTACAAGGAAGAATACGGCTGCAACTTCACCTCCA
TCATTCCTACAAACATCTATGGTCCCCATGATAACTTCAATGTCCAAGTA
CGAAATTGTCGTCCCGTCCTCTTTTTCCTTCTCTCCATGCCGTCCTGCAG
ATTTTATCAAAATACTCGCTTGATGGAAGCGACTCACCCTCTTCTTCCCT
CCGTCCCTCCCTCCCTCCCTCCGTCCCTCCTTCCCTCCCCCCCTCCCATT
AGGACGGACACGTCATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAG
CAGGCGGGCACAGATTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCA
GTTCATTTACTCCCGGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCG
AGTATCACGTGAGTGGGCGAGGGAGGGAGGGAGGGGGGAGGGAGGAAGGG
GGGGGGGGGGGGGCGAGGTTTGAGAAGCGGCCGTGTCAGTCGATGCATGC
ATTGTCTCGTGGAGGTTGGCCGAGTTGATGAAATGTGAACCATGCACGAG
TGTGTGGGTGACAAAAATTAGAGTACCGTCTTGAGAAAGGAGCTCTCTGG
AAAAGAAGGATGAATAAAGGAAAGGAAGGATAGTAGAATACACTATACCG
CACACTCACATAGATGATTTCTTACATCAACTCGCCTCCTCCCTCCTTCC
TCCTTTCCCTCCTTCCTCCTTTCCCTCCTTCCTCCTTCCCCTCCTTCCCT
TCCTAGTCCGCGGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGT
GTCCATCGGGACCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGG
GCAAGGTGGTGGTAAGTCTTGAGAAAAGGATTGAAGGGAAAGGGAGAGTA
ATGGTATCGCGTCGCTCTATCAAAAGCTATGACAACTTACTCACTTCGCT
CTCTCCCTTCTTCTCTCCGTATGTCTAGTTCGACACCGACAAGGCCGATG
GCCAGTACAAGAAGACTGCCAGCAACGCCAAGCTCCGTTCCCTCCGTCCA
GACTTCCGCTTCACGACCATAGAGGAGGGACTTGCCCAGACCTGTGCTTG
GTTCAAGGAGAATTACGCGACTGCCCGAAAGTAA
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Coding sequence (CDS) from alignment at chr12:425168..427151+

>NO12G01370.1 ID=NO12G01370.1|Name=NO12G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr12:425168..427151+ (Nannochloropsis oceanica)
ATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCCT
GGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGACCCCATCGCCACCG
AGACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGAT
AAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCAT
TCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAGG
TGGAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGCC
TGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTGT
GTTCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAATG
GGCCGCCCCATGCCTCTAATGAGGGGTACGCGTATGCCAAACGCATGCTC
GACGTCATGTCTCGCTGCTACAAGGAAGAATACGGCTGCAACTTCACCTC
CATCATTCCTACAAACATCTATGGTCCCCATGATAACTTCAATGTCCAAG
ACGGACACGTCATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAGCAG
GCGGGCACAGATTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCAGTT
CATTTACTCCCGGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCGAGT
ATCACTCCGCGGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGTG
TCCATCGGGACCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGGG
CAAGGTGGTGTTCGACACCGACAAGGCCGATGGCCAGTACAAGAAGACTG
CCAGCAACGCCAAGCTCCGTTCCCTCCGTCCAGACTTCCGCTTCACGACC
ATAGAGGAGGGACTTGCCCAGACCTGTGCTTGGTTCAAGGAGAATTACGC
GACTGCCCGAAAGTAA
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Synonyms
Publications