NO12G01300.1, NO12G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01300.1
Unique NameNO12G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length647
Alignment locationchr12:411110..411904 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:411110..411904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01300.1 vs.
Match: XP_008879726.1 (hypothetical protein H310_13857 [Aphanomyces invadans]; ETV91607.1 hypothetical protein H310_13857 [Aphanomyces invadans])

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-16
Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = 0 
Query:   60 REQGNVFYRDGNFEAALACYTRSLTLDSENVLALSNRAMTHIKLGQFQAAVKDATQAVILDPCHVKSLQRRASAYVKQGMHHSALRDVEKALGYQPNSK----ELRVEKKRLQQKLK----TLAAIEVLSSS-SSPSNGSV 192
            +E GN  ++ G + AA+ CY+RSL+ +  N + LSNRAM H+KL Q+  A  D + A+ +DP HVKSL RRA+A    G HH+A+ D+E ALG +  +K     L+  +  L+Q +K    T  ++E ++ + S+P++ SV
Sbjct:  154 KEDGNNHFKQGEYAAAINCYSRSLSYNPRNPIVLSNRAMAHLKLQQYGKAEVDCSSALAVDPTHVKSLVRRATARNALGKHHAAIADLEAALGLESTNKAIATHLKTTRDVLKQSIKRSPTTKISVETIAPTVSAPTSSSV 294
The following BLAST results are available for this feature:
BLAST of NO12G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008879726.12.000e-1639.72hypothetical protein H310_13857 [Aphanomyces invad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01300NO12G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01300.1NO12G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01300.1.cds1NO12G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01300.1.cds2NO12G01300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01300.1 ID=NO12G01300.1|Name=NO12G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=647bp
ATGGACCCCCGGATGCTGGCGCAGCGGGCGCAAGGCCAAATGCAGGCCAA
CGTCCAGGCAGTGCAAGACTGCACGCGGGAGCTTTTCGCGTGGGAGGAGG
TCATGGCGGCCAAAGACGAGGCCCTAAGACAGCGAAAATTCAGGAGGGAG
CGAGGCGAGGAGGACGCGACGGATGTACGAGAACAGGGAAATGTATTTTA
CAGGGACGGCAACTTTGAGGCAGCCTTGGCGTGCTACACACGGTCCCTGA
CCTTAGATAGCGAAAATGTTCTTGCCCTCTCGAATCGCGCCATGACCCAC
ATCAAGCTTGGGCAGTTCCAAGCAGCAGTCAAAGATGCTACCCAGGCCGT
GATCCTCGATCCCTGCCACGTCAAGTCTTTGCAACGCCGGGCAAGTGCCT
ACGTGAAACAAGGCATGCATCATTCAGCCTTGCGGGACGTCGAAAAAGCT
TTGGGCTACCAACCCAACAGCAAGGAGCTTCGTGTTGAGAAAAAGCGACT
ACAGCAGAAGCTTAAGACGTTGGCGGCGATCGAAGTACTCTCATCGTCCT
CCTCCCCGTCGAATGGAAGCGTTGACAATGGACAAGAGAGCAAAAGCGCC
TTGTGCATGGAATAAGAATAATAGACATACTGTCATTCTAATCAATT
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protein sequence of NO12G01300.1

>NO12G01300.1-protein ID=NO12G01300.1-protein|Name=NO12G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MDPRMLAQRAQGQMQANVQAVQDCTRELFAWEEVMAAKDEALRQRKFRRE
RGEEDATDVREQGNVFYRDGNFEAALACYTRSLTLDSENVLALSNRAMTH
IKLGQFQAAVKDATQAVILDPCHVKSLQRRASAYVKQGMHHSALRDVEKA
LGYQPNSKELRVEKKRLQQKLKTLAAIEVLSSSSSPSNGSVDNGQESKSA
LCME*
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mRNA from alignment at chr12:411110..411904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01300.1 ID=NO12G01300.1|Name=NO12G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=795bp|location=Sequence derived from alignment at chr12:411110..411904+ (Nannochloropsis oceanica)
ATGGACCCCCGGATGCTGGCGCAGCGGGCGCAAGGCCAAATGCAGGCCAA
CGTCCAGGCAGTGCAAGACTGCACGCGGGAGCTTTTCGCGTGGGAGGAGG
TCATGGCGGCCAAAGACGAGGCCCTAAGACAGCGAAAATTCAGGAGGGAG
CGAGGCGAGGAGGACGCGACGGATGTACGAGAACAGGGAAATGTATTTTA
CAGGGACGGCAACTTTGAGGCAGCCTTGGCGTGCTACACACGGTCCCTGA
CCTTAGATAGGTGCGTTTTTTTTTTCACGCCCCGGGGGGGGGGGGAGGGA
GGGGGCCAGTGAAAAGATGAGGAAGCGCTGCGCCCAGAGTAGAAATATCA
CAATTTATAATTTTCAAACTTATGGCATTTCGCTTTTATTAATCCAATAC
GTAAAAAGCGAAAATGTTCTTGCCCTCTCGAATCGCGCCATGACCCACAT
CAAGCTTGGGCAGTTCCAAGCAGCAGTCAAAGATGCTACCCAGGCCGTGA
TCCTCGATCCCTGCCACGTCAAGTCTTTGCAACGCCGGGCAAGTGCCTAC
GTGAAACAAGGCATGCATCATTCAGCCTTGCGGGACGTCGAAAAAGCTTT
GGGCTACCAACCCAACAGCAAGGAGCTTCGTGTTGAGAAAAAGCGACTAC
AGCAGAAGCTTAAGACGTTGGCGGCGATCGAAGTACTCTCATCGTCCTCC
TCCCCGTCGAATGGAAGCGTTGACAATGGACAAGAGAGCAAAAGCGCCTT
GTGCATGGAATAAGAATAATAGACATACTGTCATTCTAATCAATT
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Coding sequence (CDS) from alignment at chr12:411110..411904+

>NO12G01300.1 ID=NO12G01300.1|Name=NO12G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at chr12:411110..411904+ (Nannochloropsis oceanica)
ATGGACCCCCGGATGCTGGCGCAGCGGGCGCAAGGCCAAATGCAGGCCAA
CGTCCAGGCAGTGCAAGACTGCACGCGGGAGCTTTTCGCGTGGGAGGAGG
TCATGGCGGCCAAAGACGAGGCCCTAAGACAGCGAAAATTCAGGAGGGAG
CGAGGCGAGGAGGACGCGACGGATGTACGAGAACAGGGAAATGTATTTTA
CAGGGACGGCAACTTTGAGGCAGCCTTGGCGTGCTACACACGGTCCCTGA
CCTTAGATAGCGAAAATGTTCTTGCCCTCTCGAATCGCGCCATGACCCAC
ATCAAGCTTGGGCAGTTCCAAGCAGCAGTCAAAGATGCTACCCAGGCCGT
GATCCTCGATCCCTGCCACGTCAAGTCTTTGCAACGCCGGGCAAGTGCCT
ACGTGAAACAAGGCATGCATCATTCAGCCTTGCGGGACGTCGAAAAAGCT
TTGGGCTACCAACCCAACAGCAAGGAGCTTCGTGTTGAGAAAAAGCGACT
ACAGCAGAAGCTTAAGACGTTGGCGGCGATCGAAGTACTCTCATCGTCCT
CCTCCCCGTCGAATGGAAGCGTTGACAATGGACAAGAGAGCAAAAGCGCC
TTGTGCATGGAATAA
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Synonyms
Publications