NO12G01220.1, NO12G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01220.1
Unique NameNO12G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr12:378289..380064 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:378289..380064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01220.1 vs.
Match: EWM25908.1 (inorganic pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 493.4 bits (1269), Expect = 4.600e-136
Identity = 237/284 (83.45%), Postives = 258/284 (90.85%), Query Frame = 0
Query:    1 MFQRGILLAMASTLLLQSTMGFLRPSTTLSATRVAAAAGLRFSQTRRSMAMISTETQGAAETEEFRVFFKKDGNKISPWHDIPLKADGQTYNFITEIPKFTKAKMEVATKEAMNPISQDMKKGKLRYYHGPIFWNYGLLPQTWEDPNHEHPELKVKGDNDPVDVVEIGSVALTVGSVTPVKPLGVLAMIDDGELDWKIIAIAASDPLANELNDIADVEAKLPGVVSGIREWFRWYKTPDDKPINAFGFGERALAKADALKVIDETHAAWKGFMNGKTDGGKLWK 285
            M QRGIL+ MASTLLLQS++GFLRPST L A R A  A LR S +RR +AM+ TET+GAA+TEEFR+FFKKDGN ISPWHDIPLKAD QT+NFITEIPKFTKAKMEVATKE +NPISQDMKKGKLR+YHGPIFWNYGLLPQTWEDPNH HPELKV+GDNDPVDVVEIGS  L++G+VTPVKPLGVLAMIDDGELDWKIIAIAASDP+A ELNDIADVEAKLPGVVSGIREWFRWYKTPD KP+N FGFGE+ALAKADALKVIDETH AWK  M+G+TD GKLWK
Sbjct:    2 MLQRGILVVMASTLLLQSSLGFLRPSTALPAVR-AGTASLRLSNSRRFLAMVGTETKGAADTEEFRIFFKKDGNTISPWHDIPLKADPQTFNFITEIPKFTKAKMEVATKEELNPISQDMKKGKLRFYHGPIFWNYGLLPQTWEDPNHTHPELKVQGDNDPVDVVEIGSTVLSMGAVTPVKPLGVLAMIDDGELDWKIIAIAASDPMAGELNDIADVEAKLPGVVSGIREWFRWYKTPDGKPVNEFGFGEKALAKADALKVIDETHGAWKSLMSGQTDAGKLWK 284          
The following BLAST results are available for this feature:
BLAST of NO12G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25908.14.600e-13683.45inorganic pyrophosphatase [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01220NO12G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01220.1NO12G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01220.1.cds1NO12G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01220.1.cds2NO12G01220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01220.1.cds3NO12G01220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01220.1.cds4NO12G01220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01220.1.cds5NO12G01220.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01220.1.cds6NO12G01220.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01220.1 ID=NO12G01220.1|Name=NO12G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGTTCCAGCGCGGAATTCTTCTTGCCATGGCTTCGACTCTATTGCTACA
GTCTACGATGGGTTTTTTGCGTCCCTCGACCACCCTCTCTGCTACCCGAG
TTGCCGCCGCCGCTGGCCTCCGCTTCAGCCAGACCCGCCGCTCCATGGCC
ATGATCAGCACCGAGACCCAGGGTGCTGCCGAGACTGAGGAGTTCCGTGT
CTTCTTCAAGAAGGACGGCAACAAGATCTCCCCCTGGCACGACATCCCCC
TCAAGGCGGACGGCCAGACATACAACTTTATCACCGAGATCCCCAAGTTC
ACCAAGGCTAAGATGGAGGTGGCGACCAAGGAGGCGATGAACCCCATCTC
CCAGGACATGAAGAAGGGCAAGCTTCGTTACTACCACGGCCCTATCTTTT
GGAACTACGGCCTCTTGCCCCAGACGTGGGAGGACCCCAACCACGAGCAC
CCCGAGCTCAAGGTGAAGGGGGACAACGACCCTGTGGACGTGGTCGAGAT
TGGTAGCGTTGCTTTGACCGTCGGTTCGGTGACGCCGGTCAAGCCCCTGG
GAGTGCTTGCCATGATTGATGACGGAGAGTTGGACTGGAAAATCATTGCG
ATCGCTGCGTCTGACCCTCTGGCTAACGAATTGAATGATATTGCGGATGT
GGAGGCCAAATTACCTGGGGTGGTGTCGGGGATTAGGGAGTGGTTCCGCT
GGTACAAGACGCCCGATGACAAGCCCATTAATGCGTTTGGGTTTGGCGAG
AGGGCCCTGGCCAAGGCGGATGCGCTCAAGGTTATCGATGAGACCCATGC
CGCTTGGAAGGGGTTCATGAATGGCAAGACCGATGGCGGCAAGCTCTGGA
AGGCATAA
back to top

protein sequence of NO12G01220.1

>NO12G01220.1-protein ID=NO12G01220.1-protein|Name=NO12G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MFQRGILLAMASTLLLQSTMGFLRPSTTLSATRVAAAAGLRFSQTRRSMA
MISTETQGAAETEEFRVFFKKDGNKISPWHDIPLKADGQTYNFITEIPKF
TKAKMEVATKEAMNPISQDMKKGKLRYYHGPIFWNYGLLPQTWEDPNHEH
PELKVKGDNDPVDVVEIGSVALTVGSVTPVKPLGVLAMIDDGELDWKIIA
IAASDPLANELNDIADVEAKLPGVVSGIREWFRWYKTPDDKPINAFGFGE
RALAKADALKVIDETHAAWKGFMNGKTDGGKLWKA*
back to top

mRNA from alignment at chr12:378289..380064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01220.1 ID=NO12G01220.1|Name=NO12G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at chr12:378289..380064+ (Nannochloropsis oceanica)
ATGTTCCAGCGCGGAATTCTTCTTGCCATGGCTTCGACTCTATTGCTACA GTCTACGATGGGTTTTTTGCGTCCCTCGACCACCCTCTCTGCTACCCGAG TTGCCGCCGCCGCTGGCCTCCGCTTCAGCCAGACCCGCCGCTCCATGGCC ATGATCAGCACCGAGACCCAGGGTGCTGCCGAGACTGAGGAGTTCCGTGT CTTCTTCAAGGTACTTTTCAAGGAGCTTGCGGGTCGTGTAGTTCGTGGGT GGGGTTGACGGCTGGTTGCCTTCCCGAGCAAGGGAGGCGTATACTTGAAG CCAACATACGCGTGAAAACTCATGATTCGATACCATACTCATGATCCATT GAATCTCTCACATGTCTAAACGAGTAGAAGGACGGCAACAAGATCTCCCC CTGGCACGACATCCCCCTCAAGGCGGACGGCCAGACATACAACTTTATCA CCGAGATCCCCAAGTTGTAAGTCGCTTGTCCTTTCCCTTCTTCTCACTCT CTCATCTTACTATCTGTTTAAGTGTCTCGCTGACATGATTTATGTCCTTC CCCCTTTTCCTATTTTTTCTGGCAAACAGCACCAAGGCTAAGATGGAGGT GGCGACCAAGGAGGCGATGAACCCCATCTCCCAGGACATGAAGAAGGGCA AGCTTCGGTAAGTGACTGCTAGGACGCCAACACTGAAATGGGGGAAACCA CTTGATTTTTATATAATTCTAAAGCACTTCAGTAGTAGTCGTTAGGGGAG GATTGGAGTCTCCCCGCACGCTCTATCCGTATTTCGTATCACCAATTGTT TTTCTTTCCCGGGACACTAACTGTGTCTTCCCTTTCTCCCTTCCTCCCTT CCTCTCTCCCGTCCTCCCTTTCTCCCTCCCTCCTTCCCTCCCTCCCTCCT CGCTCCAGTTACTACCACGGCCCTATCTTTTGGAACTACGGCCTCTTGCC CCAGACGTGGGAGGACCCCAACCACGAGCACCCCGAGGTATGTCCTCCCT CCCTCCCTCTCTCCTTCCCTCCCTTCCATTCTTCCATTCCTTGTCTCGTT GATTTGGACGTGTACGTGACTTAATCGCCTTTTTATGGCTCGATGCGACG TTGACTGGGGCTTTAGCTCTTCTTCTTCTCACCTCTCTCCCTCCCTTCCT TATTCTCTACTTTTTTCCCCAGCTCAAGGTGAAGGGGGACAACGACCCTG TGGACGTGGTCGAGATTGGTAGCGTTGCTTTGACCGTCGGTTCGGTGACG CCGGTCAAGCCCCTGGGAGTGCTTGCCATGATTGATGACGGAGAGTTGGA CTGGAAAATCATTGCGATCGCTGCGTCTGACCCTCTGGCTAACGAATTGA ATGATATTGCGGATGTGGAGGCCAAATTACCTGGGGTGGTGTCGGGGATT AGGGAGTGGTTCCGCTGGTACAAGACGCCCGATGACAAGCCCATTAATGC GTTTGGGTTTGGCGAGAGGGCCCTGGCCAAGGCGGATGCGCTCAAGGTAG GGAGGAGAGGGAGAGACATAGGGACGGTGGGAAAGAGGGCGGATGCTTAT TGACAGGAACGGAAGGGGGAGAATTTCATGTTGTGTATGAGTCCTTGTCC ACGTTTGCCTTTGTCATCTGTGTCTGCCTATGTGAGACCGCAGATCTTTT AGCTAACCGTCTCTCTATCCCCGACATTTACACGTCTCGTTCAAATAGGT TATCGATGAGACCCATGCCGCTTGGAAGGGGTTCATGAATGGCAAGACCG ATGGCGGCAAGCTCTGGAAGGCATAA
back to top

Coding sequence (CDS) from alignment at chr12:378289..380064+

>NO12G01220.1 ID=NO12G01220.1|Name=NO12G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr12:378289..380064+ (Nannochloropsis oceanica)
ATGTTCCAGCGCGGAATTCTTCTTGCCATGGCTTCGACTCTATTGCTACA
GTCTACGATGGGTTTTTTGCGTCCCTCGACCACCCTCTCTGCTACCCGAG
TTGCCGCCGCCGCTGGCCTCCGCTTCAGCCAGACCCGCCGCTCCATGGCC
ATGATCAGCACCGAGACCCAGGGTGCTGCCGAGACTGAGGAGTTCCGTGT
CTTCTTCAAGAAGGACGGCAACAAGATCTCCCCCTGGCACGACATCCCCC
TCAAGGCGGACGGCCAGACATACAACTTTATCACCGAGATCCCCAAGTTC
ACCAAGGCTAAGATGGAGGTGGCGACCAAGGAGGCGATGAACCCCATCTC
CCAGGACATGAAGAAGGGCAAGCTTCGTTACTACCACGGCCCTATCTTTT
GGAACTACGGCCTCTTGCCCCAGACGTGGGAGGACCCCAACCACGAGCAC
CCCGAGCTCAAGGTGAAGGGGGACAACGACCCTGTGGACGTGGTCGAGAT
TGGTAGCGTTGCTTTGACCGTCGGTTCGGTGACGCCGGTCAAGCCCCTGG
GAGTGCTTGCCATGATTGATGACGGAGAGTTGGACTGGAAAATCATTGCG
ATCGCTGCGTCTGACCCTCTGGCTAACGAATTGAATGATATTGCGGATGT
GGAGGCCAAATTACCTGGGGTGGTGTCGGGGATTAGGGAGTGGTTCCGCT
GGTACAAGACGCCCGATGACAAGCCCATTAATGCGTTTGGGTTTGGCGAG
AGGGCCCTGGCCAAGGCGGATGCGCTCAAGGTTATCGATGAGACCCATGC
CGCTTGGAAGGGGTTCATGAATGGCAAGACCGATGGCGGCAAGCTCTGGA
AGGCATAA
back to top
Synonyms
Publications