NO12G01200.1, NO12G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01200.1
Unique NameNO12G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr12:375700..376188 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:375700..376188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01200.1 vs.
Match: EWM25895.1 (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 279.6 bits (714), Expect = 6.000e-72
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0 
Query:    1 MWPGRGSNSASRTVAAAPSGGAAQEVIIVPRNFKLLEELDHAEKGHDPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            MWPGR  +S +RT AA P+ G+ Q+ IIVPRNFKLLEELD AEKG DPTISLGLQNQ+DIFLVAWNGSIFGPPGTTFEGRLFELK+ECGDRYP  PP VRFVSRVNLPCVD +TGVV P KL ILS+WDR FTMERVLNELRREMM Q +RRLPQPPEGSRF
Sbjct:    1 MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
The following BLAST results are available for this feature:
BLAST of NO12G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25895.16.000e-7281.48ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01200NO12G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01200.1NO12G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01200.1.cds1NO12G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01200.1 ID=NO12G01200.1|Name=NO12G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ATGTGGCCTGGTCGCGGGAGCAACAGCGCAAGCCGCACGGTCGCAGCTGC
TCCGTCAGGGGGGGCGGCGCAGGAGGTGATCATTGTACCCCGCAATTTCA
AGCTGCTCGAGGAGCTCGACCACGCCGAGAAAGGGCACGACCCAACCATT
TCCCTAGGACTGCAGAATCAGGATGACATTTTTTTGGTGGCTTGGAATGG
CTCCATCTTCGGCCCGCCAGGCACGACGTTCGAGGGCCGGTTGTTTGAAC
TCAAGGTGGAATGCGGCGACCGCTACCCAGAATTGCCCCCAGCCGTCCGC
TTTGTCAGCCGCGTGAATTTGCCGTGCGTTGACCCGACTACCGGGGTAGT
GCAGCCGCACAAATTGTCGATCTTGAGTAATTGGGACAGGGCATTTACGA
TGGAAAGGGTGTTGAACGAGCTTAGAAGAGAGATGATGAACCAAGCCAAT
CGACGGCTGCCCCAGCCGCCTGAGGGGAGTCGATTTTGA
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protein sequence of NO12G01200.1

>NO12G01200.1-protein ID=NO12G01200.1-protein|Name=NO12G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MWPGRGSNSASRTVAAAPSGGAAQEVIIVPRNFKLLEELDHAEKGHDPTI
SLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVR
FVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQAN
RRLPQPPEGSRF*
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mRNA from alignment at chr12:375700..376188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01200.1 ID=NO12G01200.1|Name=NO12G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp|location=Sequence derived from alignment at chr12:375700..376188- (Nannochloropsis oceanica)
ATGTGGCCTGGTCGCGGGAGCAACAGCGCAAGCCGCACGGTCGCAGCTGC
TCCGTCAGGGGGGGCGGCGCAGGAGGTGATCATTGTACCCCGCAATTTCA
AGCTGCTCGAGGAGCTCGACCACGCCGAGAAAGGGCACGACCCAACCATT
TCCCTAGGACTGCAGAATCAGGATGACATTTTTTTGGTGGCTTGGAATGG
CTCCATCTTCGGCCCGCCAGGCACGACGTTCGAGGGCCGGTTGTTTGAAC
TCAAGGTGGAATGCGGCGACCGCTACCCAGAATTGCCCCCAGCCGTCCGC
TTTGTCAGCCGCGTGAATTTGCCGTGCGTTGACCCGACTACCGGGGTAGT
GCAGCCGCACAAATTGTCGATCTTGAGTAATTGGGACAGGGCATTTACGA
TGGAAAGGGTGTTGAACGAGCTTAGAAGAGAGATGATGAACCAAGCCAAT
CGACGGCTGCCCCAGCCGCCTGAGGGGAGTCGATTTTGA
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Coding sequence (CDS) from alignment at chr12:375700..376188-

>NO12G01200.1 ID=NO12G01200.1|Name=NO12G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr12:375700..376188- (Nannochloropsis oceanica)
ATGTGGCCTGGTCGCGGGAGCAACAGCGCAAGCCGCACGGTCGCAGCTGC
TCCGTCAGGGGGGGCGGCGCAGGAGGTGATCATTGTACCCCGCAATTTCA
AGCTGCTCGAGGAGCTCGACCACGCCGAGAAAGGGCACGACCCAACCATT
TCCCTAGGACTGCAGAATCAGGATGACATTTTTTTGGTGGCTTGGAATGG
CTCCATCTTCGGCCCGCCAGGCACGACGTTCGAGGGCCGGTTGTTTGAAC
TCAAGGTGGAATGCGGCGACCGCTACCCAGAATTGCCCCCAGCCGTCCGC
TTTGTCAGCCGCGTGAATTTGCCGTGCGTTGACCCGACTACCGGGGTAGT
GCAGCCGCACAAATTGTCGATCTTGAGTAATTGGGACAGGGCATTTACGA
TGGAAAGGGTGTTGAACGAGCTTAGAAGAGAGATGATGAACCAAGCCAAT
CGACGGCTGCCCCAGCCGCCTGAGGGGAGTCGATTTTGA
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Synonyms
Publications