NO12G01190.1, NO12G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01190.1
Unique NameNO12G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2717
Alignment locationchr12:371959..374900 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:371959..374900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01190.1 vs.
Match: EWM25900.1 (major facilitator superfamily [Nannochloropsis gaditana])

HSP 1 Score: 474.2 bits (1219), Expect = 5.800e-130
Identity = 308/538 (57.25%), Postives = 366/538 (68.03%), Query Frame = 0
Query:    1 MFLGGKIELRLGPRLAATLGSCLLVGAPLLSSGVTSLWGMTFTYGVLFGFGGGLTYTVPLVCGYRWEPKRKGLVSGMVLSGFGLSALVFNQVQAALANPGNLKPDVEYKGKLYFSSGSVTDAVPAMLLKLGAIYGALCVCGILLLQDPVYKKIEE-VEDETGGTGGNGAGLCGNSSAHSNGSSSRNGGGGGERGGGGGGGGGGGGGGGGGGGSEGSSPLRRRLCEDEGDHESEEQEQKEIEYQGQRQQDQREGGGGDGRGNDDFLKLRPLSVSNEDQEEGEEEDMHSWNADIESHERK------RRLHYHHHHQQQQHESGEEEEEYDVTPQELLRLPQAYHVSLSFTLGALSGLVTLATYKSIGITSFLDDHFMSVYVGSFSSLANALGRVFWGWASDKLGAYHALYTLCICQSFFLFTWILTVSGWKNKWLYAVWVAGITFSHGGNFAIYPALISNLFGKTNSAPNFGLIFLGYGVVSLMGLAVLPRLGTGGLTPLCWILGVVALMSAGSVWGLHACYASPKRGGRTGRRKAGGRN 532
            MFLGGKIELR+GPR AA +GSC LVGAPLLSS VTSLW MT TYG+LFGFGGGLTYTVPLVCGYRWEP+RKGLVSG++LSGFGLSALVFNQ+Q+ L NP NLKPDV YK K YF  G VTDAVP +L+KLG +Y  LCV G LLLQDP+YKKIE+  E+E       G   C ++S+H               G G                + GSSPLRRR  E+EG       E   +EYQ  R+  +  G GG GR          ++V N   + G  E++     D+   E +       +      + ++     EEEEE +V+P EL+ LPQA+HVSLSFTLGALSGLVTLATYKSIGI++FLDDHFMS  VGS SS+ANALGR+FWGW SD+ GAY  LY LC+CQ+ FLF W LTV  WK++WL+A+ VAG+ FSHGGNFAIYPALI+ LFGKTNSAPNFGLIFL YG+ SL+GL+VLP L +  LTPLC +LG +AL SAGSVWGL A Y        T + KAGGR+
Sbjct:   69 MFLGGKIELRVGPRAAAAIGSCCLVGAPLLSSMVTSLWAMTCTYGLLFGFGGGLTYTVPLVCGYRWEPERKGLVSGVILSGFGLSALVFNQIQSVLVNPHNLKPDVVYKNKRYFGPGPVTDAVPGLLVKLGLLYSLLCVTGTLLLQDPIYKKIEDGAEEEEEDKKERG---CLSASSHYLDIVGAESTALVAAGDGPAHDSRVHKRDAPCEVAGGSSPLRRRGWEEEG-----AMEISTLEYQRLREDREPVGEGGKGREGG----RGGVAVGNGGHKNGVGEEVKGGGRDLAGKEPRLGGTQVDKGSDKDVNGERARPGAEEEEEVEVSPSELVCLPQAWHVSLSFTLGALSGLVTLATYKSIGISTFLDDHFMSAVVGSVSSVANALGRIFWGWMSDRAGAYRTLYILCLCQAGFLFAWGLTVGAWKSRWLFALCVAGVAFSHGGNFAIYPALIATLFGKTNSAPNFGLIFLFYGLASLVGLSVLPWL-SPELTPLCDVLGGIALTSAGSVWGLQAWY--------TPKLKAGGRH 585          
The following BLAST results are available for this feature:
BLAST of NO12G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25900.15.800e-13057.25major facilitator superfamily [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01190NO12G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01190.1NO12G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01190.1.cds1NO12G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01190.1.cds2NO12G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01190.1 ID=NO12G01190.1|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2717bp
TTGCTTCTTGCTTACTGTGTGGCTATGGGGGGGGGCAGTGAGGGGACGAG
ATAACTCCACAAAATTTCTGAAAGTCGAATGGCGACTTTCTCATGTGGTC
AAAGACACGGACGGTCGGCTCGGATTGGTTTGTGAGCATGGGCATCTCCT
CGGCACGCAAGAGGCAGATGGGCCCTTTACTTTGTGCTTCGGCAACTTGA
ATGTCGTGGTCCCGTGGACACGAGCACCTGTAACTCTCAAACTGAATGCC
CGGATTAGAATGACGAAAGAGAGGATAGATAAGGATGGGGACTGAGCGGT
GCACATTTCCGCCTCTAGTGTAGGATGAACAGACCATAGGACGTCGGGAG
ACTTGGGGCCCGTTATCAAGCCGTTGAACTTCATGAAGAGGAAAACCAAG
GCTCGCTCCTCCTCCCTTGCGTCTGAGCTTCGAAGTCCACGCGAAACGCC
TTATACCTCCCCCAAACATAGCCCCTTAGATTTTTTTCCACCTTCTCATA
CCTATCACGCATTCTACTGGTGGGACAGGTGGAATTTATAGAGCAGTCCA
AGAGGCAAGCAAGACCCGCCGCCCCGCGCTCTGCCTCCGACGCACTCCAG
CCTCGCCATAAGGACTGAATCGTGATGCTTCATTACTTGCCCACGGGCCC
TAAGGCCGCAACTTTTGGCGGCTTTCTTCTTCACTTGGTCATGGGCGCGT
AAGTTCATGGCTGGTCAAGCTGTGTGGAGGAAAATACTAGAGACTTCACT
GTTTTGTCATGCCGACCTGCCGTCATTCCTTCCTTGAATCTGGACAATAT
TAATATTATCCGCCTGCACCCCAGTGCTTTCCGTATACTTGCCACCATTA
TAAGCTCAACCCTTGCAACTTAATCTCCCAAAGCGTCTATTCCTTTGGCT
CCCTCACAGTGTATCTGACTTCCTACCTTCGCGTGTACGACCCCACCATC
ACCTACAACGACACCATCATAATTTATGCTTGCACAATCGCCGGGCAGGC
CTGCCTGATGTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCC
TCGCGGCAACATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCA
TCGGGAGTTACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTT
TGGATTTGGCGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATC
GGTGGGAGCCCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGC
TTTGGTTTGTCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAA
CCCGGGAAATTTGAAACCGGATGTGGAGTATAAGGGCAAACTCTACTTTA
GCTCCGGGTCCGTGACAGACGCCGTACCTGCGATGCTCTTAAAGCTTGGG
GCTATTTACGGTGCGCTGTGCGTGTGTGGCATCCTCCTCCTGCAAGACCC
GGTCTACAAAAAAATCGAAGAAGTCGAAGACGAGACAGGGGGGACGGGAG
GCAATGGAGCCGGATTGTGTGGGAATTCCAGTGCACACAGCAACGGTAGC
AGCAGCAGGAATGGAGGAGGGGGAGGGGAACGTGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGGGGT
CTTCGCCGTTGCGGCGGAGGTTATGCGAGGATGAGGGAGATCACGAATCC
GAGGAGCAGGAGCAGAAAGAAATAGAGTACCAGGGGCAGCGGCAGCAGGA
CCAACGGGAGGGTGGAGGAGGGGATGGGAGAGGAAATGATGACTTTCTGA
AGCTGCGCCCACTTTCGGTGAGCAACGAGGACCAGGAGGAGGGAGAGGAG
GAGGACATGCATAGTTGGAACGCAGACATCGAAAGTCACGAACGCAAACG
ACGCCTACACTACCACCACCACCACCAGCAGCAGCAGCATGAAAGTGGTG
AAGAAGAGGAGGAGTACGACGTCACCCCCCAAGAGCTTCTGCGCTTACCG
CAAGCCTACCATGTCTCCTTGTCCTTCACTTTAGGCGCCCTCTCCGGCCT
CGTCACTTTAGCCACATACAAGAGCATTGGTATCACCTCCTTTCTCGACG
ATCATTTCATGTCCGTCTACGTTGGTTCCTTCTCCTCCCTCGCCAATGCC
CTCGGTCGCGTCTTCTGGGGTTGGGCCAGCGATAAGCTAGGCGCCTACCA
TGCCCTCTACACCTTGTGTATCTGCCAGTCTTTTTTCCTCTTCACCTGGA
TACTGACCGTGAGCGGGTGGAAGAATAAATGGCTCTACGCCGTCTGGGTC
GCAGGCATCACGTTTTCCCATGGCGGAAATTTCGCGATTTACCCGGCCTT
GATCTCTAATTTGTTTGGAAAGACAAACAGTGCGCCGAACTTCGGATTGA
TTTTTTTGGGGTATGGGGTAGTGAGTTTGATGGGATTGGCTGTCTTGCCA
CGTCTGGGGACGGGGGGCTTGACGCCCTTGTGTTGGATTTTGGGGGTGGT
GGCATTGATGAGTGCAGGGAGTGTGTGGGGGTTGCACGCGTGTTATGCTT
CTCCGAAAAGGGGAGGGAGGACCGGGAGGAGGAAGGCGGGGGGGAGGAAT
GGTAGGGCTAGGTGGGGAGGGACAAGGGAGTGGCTATGGGTGCCGAAGGA
GGGGGAGGAAGAAGGGGAAATGGAGGGGGAGGGGGGGCAGCAGTTGGTGC
TTCAGCAGAAGATGTGA
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protein sequence of NO12G01190.1

>NO12G01190.1-protein ID=NO12G01190.1-protein|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MFLGGKIELRLGPRLAATLGSCLLVGAPLLSSGVTSLWGMTFTYGVLFGF
GGGLTYTVPLVCGYRWEPKRKGLVSGMVLSGFGLSALVFNQVQAALANPG
NLKPDVEYKGKLYFSSGSVTDAVPAMLLKLGAIYGALCVCGILLLQDPVY
KKIEEVEDETGGTGGNGAGLCGNSSAHSNGSSSRNGGGGGERGGGGGGGG
GGGGGGGGGGGSEGSSPLRRRLCEDEGDHESEEQEQKEIEYQGQRQQDQR
EGGGGDGRGNDDFLKLRPLSVSNEDQEEGEEEDMHSWNADIESHERKRRL
HYHHHHQQQQHESGEEEEEYDVTPQELLRLPQAYHVSLSFTLGALSGLVT
LATYKSIGITSFLDDHFMSVYVGSFSSLANALGRVFWGWASDKLGAYHAL
YTLCICQSFFLFTWILTVSGWKNKWLYAVWVAGITFSHGGNFAIYPALIS
NLFGKTNSAPNFGLIFLGYGVVSLMGLAVLPRLGTGGLTPLCWILGVVAL
MSAGSVWGLHACYASPKRGGRTGRRKAGGRNGRARWGGTREWLWVPKEGE
EEGEMEGEGGQQLVLQQKM*
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mRNA from alignment at chr12:371959..374900+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01190.1 ID=NO12G01190.1|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2942bp|location=Sequence derived from alignment at chr12:371959..374900+ (Nannochloropsis oceanica)
TTGCTTCTTGCTTACTGTGTGGCTATGGGGGGGGGCAGTGAGGGGACGAG ATAACTCCACAAAATTTCTGAAAGTCGAATGGCGACTTTCTCATGTGGTC AAAGACACGGACGGTCGGCTCGGATTGGTTTGTGAGCATGGGCATCTCCT CGGCACGCAAGAGGCAGATGGGCCCTTTACTTTGTGCTTCGGCAACTTGA ATGTCGTGGTCCCGTGGACACGAGCACCTGTAACTCTCAAACTGAATGCC CGGATTAGAATGACGAAAGAGAGGATAGATAAGGATGGGGACTGAGCGGT GCACATTTCCGCCTCTAGTGTAGGATGAACAGACCATAGGACGTCGGGAG ACTTGGGGCCCGTTATCAAGCCGTTGAACTTCATGAAGAGGAAAACCAAG GCTCGCTCCTCCTCCCTTGCGTCTGAGCTTCGAAGTCCACGCGAAACGCC TTATACCTCCCCCAAACATAGCCCCTTAGATTTTTTTCCACCTTCTCATA CCTATCACGCATTCTACTGGTGGGACAGGTGGAATTTATAGAGCAGTCCA AGAGGCAAGCAAGACCCGCCGCCCCGCGCTCTGCCTCCGACGCACTCCAG CCTCGCCATAAGGACTGAATCGTGATGCTTCATTACTTGCCCACGGGCCC TAAGGCCGCAACTTTTGGCGGCTTTCTTCTTCACTTGGTCATGGGCGCGT AAGTTCATGGCTGGTCAAGCTGTGTGGAGGAAAATACTAGAGACTTCACT GTTTTGTCATGCCGACCTGCCGTCATTCCTTCCTTGAATCTGGACAATAT TAATATTATCCGCCTGCACCCCAGTGCTTTCCGTATACTTGCCACCATTA TAAGCTCAACCCTTGCAACTTAATCTCCCAAAGCGTCTATTCCTTTGGCT CCCTCACAGTGTATCTGACTTCCTACCTTCGCGTGTACGACCCCACCATC ACCTACAACGACACCATCATAATTTATGCTTGCACAATCGCCGGGCAGGC CTGCCTGATGTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCC TCGCGGCAACATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCA TCGGGAGTTACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTT TGGATTTGGCGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATC GGTGGGAGCCCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGC TTTGGTTTGTCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAA CCCGGGAAATTTGAAACCGGATGTGGAGTATAAGGTAAGGAGGGAAGAAG GGAAAGAGGAAGGTTTCGATTGGTTGGTATTGGACTGTAATCAGCAATTG CTCGGGCTAATCCGTGTAGGAATTCGAAGCCCGCTAAAGAATTGAAGGAA GACAAACAGAGACCCTGTCATTCAAATGAGTGGTCTGCGTGCGCCACGCG AGAGGTTTCTCACACTCTTCAATTTTCTACCCTCCTCCCCATCCTTACCT CCTCCATAGGGCAAACTCTACTTTAGCTCCGGGTCCGTGACAGACGCCGT ACCTGCGATGCTCTTAAAGCTTGGGGCTATTTACGGTGCGCTGTGCGTGT GTGGCATCCTCCTCCTGCAAGACCCGGTCTACAAAAAAATCGAAGAAGTC GAAGACGAGACAGGGGGGACGGGAGGCAATGGAGCCGGATTGTGTGGGAA TTCCAGTGCACACAGCAACGGTAGCAGCAGCAGGAATGGAGGAGGGGGAG GGGAACGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAAGTGAGGGGTCTTCGCCGTTGCGGCGGAGGTTATG CGAGGATGAGGGAGATCACGAATCCGAGGAGCAGGAGCAGAAAGAAATAG AGTACCAGGGGCAGCGGCAGCAGGACCAACGGGAGGGTGGAGGAGGGGAT GGGAGAGGAAATGATGACTTTCTGAAGCTGCGCCCACTTTCGGTGAGCAA CGAGGACCAGGAGGAGGGAGAGGAGGAGGACATGCATAGTTGGAACGCAG ACATCGAAAGTCACGAACGCAAACGACGCCTACACTACCACCACCACCAC CAGCAGCAGCAGCATGAAAGTGGTGAAGAAGAGGAGGAGTACGACGTCAC CCCCCAAGAGCTTCTGCGCTTACCGCAAGCCTACCATGTCTCCTTGTCCT TCACTTTAGGCGCCCTCTCCGGCCTCGTCACTTTAGCCACATACAAGAGC ATTGGTATCACCTCCTTTCTCGACGATCATTTCATGTCCGTCTACGTTGG TTCCTTCTCCTCCCTCGCCAATGCCCTCGGTCGCGTCTTCTGGGGTTGGG CCAGCGATAAGCTAGGCGCCTACCATGCCCTCTACACCTTGTGTATCTGC CAGTCTTTTTTCCTCTTCACCTGGATACTGACCGTGAGCGGGTGGAAGAA TAAATGGCTCTACGCCGTCTGGGTCGCAGGCATCACGTTTTCCCATGGCG GAAATTTCGCGATTTACCCGGCCTTGATCTCTAATTTGTTTGGAAAGACA AACAGTGCGCCGAACTTCGGATTGATTTTTTTGGGGTATGGGGTAGTGAG TTTGATGGGATTGGCTGTCTTGCCACGTCTGGGGACGGGGGGCTTGACGC CCTTGTGTTGGATTTTGGGGGTGGTGGCATTGATGAGTGCAGGGAGTGTG TGGGGGTTGCACGCGTGTTATGCTTCTCCGAAAAGGGGAGGGAGGACCGG GAGGAGGAAGGCGGGGGGGAGGAATGGTAGGGCTAGGTGGGGAGGGACAA GGGAGTGGCTATGGGTGCCGAAGGAGGGGGAGGAAGAAGGGGAAATGGAG GGGGAGGGGGGGCAGCAGTTGGTGCTTCAGCAGAAGATGTGA
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Coding sequence (CDS) from alignment at chr12:371959..374900+

>NO12G01190.1 ID=NO12G01190.1|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at chr12:371959..374900+ (Nannochloropsis oceanica)
ATGTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCCTCGCGGC
AACATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCATCGGGAG
TTACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTTTGGATTT
GGCGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATCGGTGGGA
GCCCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGCTTTGGTT
TGTCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAACCCGGGA
AATTTGAAACCGGATGTGGAGTATAAGGGCAAACTCTACTTTAGCTCCGG
GTCCGTGACAGACGCCGTACCTGCGATGCTCTTAAAGCTTGGGGCTATTT
ACGGTGCGCTGTGCGTGTGTGGCATCCTCCTCCTGCAAGACCCGGTCTAC
AAAAAAATCGAAGAAGTCGAAGACGAGACAGGGGGGACGGGAGGCAATGG
AGCCGGATTGTGTGGGAATTCCAGTGCACACAGCAACGGTAGCAGCAGCA
GGAATGGAGGAGGGGGAGGGGAACGTGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGGGGTCTTCGCC
GTTGCGGCGGAGGTTATGCGAGGATGAGGGAGATCACGAATCCGAGGAGC
AGGAGCAGAAAGAAATAGAGTACCAGGGGCAGCGGCAGCAGGACCAACGG
GAGGGTGGAGGAGGGGATGGGAGAGGAAATGATGACTTTCTGAAGCTGCG
CCCACTTTCGGTGAGCAACGAGGACCAGGAGGAGGGAGAGGAGGAGGACA
TGCATAGTTGGAACGCAGACATCGAAAGTCACGAACGCAAACGACGCCTA
CACTACCACCACCACCACCAGCAGCAGCAGCATGAAAGTGGTGAAGAAGA
GGAGGAGTACGACGTCACCCCCCAAGAGCTTCTGCGCTTACCGCAAGCCT
ACCATGTCTCCTTGTCCTTCACTTTAGGCGCCCTCTCCGGCCTCGTCACT
TTAGCCACATACAAGAGCATTGGTATCACCTCCTTTCTCGACGATCATTT
CATGTCCGTCTACGTTGGTTCCTTCTCCTCCCTCGCCAATGCCCTCGGTC
GCGTCTTCTGGGGTTGGGCCAGCGATAAGCTAGGCGCCTACCATGCCCTC
TACACCTTGTGTATCTGCCAGTCTTTTTTCCTCTTCACCTGGATACTGAC
CGTGAGCGGGTGGAAGAATAAATGGCTCTACGCCGTCTGGGTCGCAGGCA
TCACGTTTTCCCATGGCGGAAATTTCGCGATTTACCCGGCCTTGATCTCT
AATTTGTTTGGAAAGACAAACAGTGCGCCGAACTTCGGATTGATTTTTTT
GGGGTATGGGGTAGTGAGTTTGATGGGATTGGCTGTCTTGCCACGTCTGG
GGACGGGGGGCTTGACGCCCTTGTGTTGGATTTTGGGGGTGGTGGCATTG
ATGAGTGCAGGGAGTGTGTGGGGGTTGCACGCGTGTTATGCTTCTCCGAA
AAGGGGAGGGAGGACCGGGAGGAGGAAGGCGGGGGGGAGGAATGGTAGGG
CTAGGTGGGGAGGGACAAGGGAGTGGCTATGGGTGCCGAAGGAGGGGGAG
GAAGAAGGGGAAATGGAGGGGGAGGGGGGGCAGCAGTTGGTGCTTCAGCA
GAAGATGTGA
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Synonyms
Publications