|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:371959..374900 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01190.1 vs.
Match: EWM25900.1 (major facilitator superfamily [Nannochloropsis gaditana]) HSP 1 Score: 474.2 bits (1219), Expect = 5.800e-130 Identity = 308/538 (57.25%), Postives = 366/538 (68.03%), Query Frame = 0
Query: 1 MFLGGKIELRLGPRLAATLGSCLLVGAPLLSSGVTSLWGMTFTYGVLFGFGGGLTYTVPLVCGYRWEPKRKGLVSGMVLSGFGLSALVFNQVQAALANPGNLKPDVEYKGKLYFSSGSVTDAVPAMLLKLGAIYGALCVCGILLLQDPVYKKIEE-VEDETGGTGGNGAGLCGNSSAHSNGSSSRNGGGGGERGGGGGGGGGGGGGGGGGGGSEGSSPLRRRLCEDEGDHESEEQEQKEIEYQGQRQQDQREGGGGDGRGNDDFLKLRPLSVSNEDQEEGEEEDMHSWNADIESHERK------RRLHYHHHHQQQQHESGEEEEEYDVTPQELLRLPQAYHVSLSFTLGALSGLVTLATYKSIGITSFLDDHFMSVYVGSFSSLANALGRVFWGWASDKLGAYHALYTLCICQSFFLFTWILTVSGWKNKWLYAVWVAGITFSHGGNFAIYPALISNLFGKTNSAPNFGLIFLGYGVVSLMGLAVLPRLGTGGLTPLCWILGVVALMSAGSVWGLHACYASPKRGGRTGRRKAGGRN 532
MFLGGKIELR+GPR AA +GSC LVGAPLLSS VTSLW MT TYG+LFGFGGGLTYTVPLVCGYRWEP+RKGLVSG++LSGFGLSALVFNQ+Q+ L NP NLKPDV YK K YF G VTDAVP +L+KLG +Y LCV G LLLQDP+YKKIE+ E+E G C ++S+H G G + GSSPLRRR E+EG E +EYQ R+ + G GG GR ++V N + G E++ D+ E + + + ++ EEEEE +V+P EL+ LPQA+HVSLSFTLGALSGLVTLATYKSIGI++FLDDHFMS VGS SS+ANALGR+FWGW SD+ GAY LY LC+CQ+ FLF W LTV WK++WL+A+ VAG+ FSHGGNFAIYPALI+ LFGKTNSAPNFGLIFL YG+ SL+GL+VLP L + LTPLC +LG +AL SAGSVWGL A Y T + KAGGR+
Sbjct: 69 MFLGGKIELRVGPRAAAAIGSCCLVGAPLLSSMVTSLWAMTCTYGLLFGFGGGLTYTVPLVCGYRWEPERKGLVSGVILSGFGLSALVFNQIQSVLVNPHNLKPDVVYKNKRYFGPGPVTDAVPGLLVKLGLLYSLLCVTGTLLLQDPIYKKIEDGAEEEEEDKKERG---CLSASSHYLDIVGAESTALVAAGDGPAHDSRVHKRDAPCEVAGGSSPLRRRGWEEEG-----AMEISTLEYQRLREDREPVGEGGKGREGG----RGGVAVGNGGHKNGVGEEVKGGGRDLAGKEPRLGGTQVDKGSDKDVNGERARPGAEEEEEVEVSPSELVCLPQAWHVSLSFTLGALSGLVTLATYKSIGISTFLDDHFMSAVVGSVSSVANALGRIFWGWMSDRAGAYRTLYILCLCQAGFLFAWGLTVGAWKSRWLFALCVAGVAFSHGGNFAIYPALIATLFGKTNSAPNFGLIFLFYGLASLVGLSVLPWL-SPELTPLCDVLGGIALTSAGSVWGLQAWY--------TPKLKAGGRH 585
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01190.1 ID=NO12G01190.1|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2717bp TTGCTTCTTGCTTACTGTGTGGCTATGGGGGGGGGCAGTGAGGGGACGAG ATAACTCCACAAAATTTCTGAAAGTCGAATGGCGACTTTCTCATGTGGTC AAAGACACGGACGGTCGGCTCGGATTGGTTTGTGAGCATGGGCATCTCCT CGGCACGCAAGAGGCAGATGGGCCCTTTACTTTGTGCTTCGGCAACTTGA ATGTCGTGGTCCCGTGGACACGAGCACCTGTAACTCTCAAACTGAATGCC CGGATTAGAATGACGAAAGAGAGGATAGATAAGGATGGGGACTGAGCGGT GCACATTTCCGCCTCTAGTGTAGGATGAACAGACCATAGGACGTCGGGAG ACTTGGGGCCCGTTATCAAGCCGTTGAACTTCATGAAGAGGAAAACCAAG GCTCGCTCCTCCTCCCTTGCGTCTGAGCTTCGAAGTCCACGCGAAACGCC TTATACCTCCCCCAAACATAGCCCCTTAGATTTTTTTCCACCTTCTCATA CCTATCACGCATTCTACTGGTGGGACAGGTGGAATTTATAGAGCAGTCCA AGAGGCAAGCAAGACCCGCCGCCCCGCGCTCTGCCTCCGACGCACTCCAG CCTCGCCATAAGGACTGAATCGTGATGCTTCATTACTTGCCCACGGGCCC TAAGGCCGCAACTTTTGGCGGCTTTCTTCTTCACTTGGTCATGGGCGCGT AAGTTCATGGCTGGTCAAGCTGTGTGGAGGAAAATACTAGAGACTTCACT GTTTTGTCATGCCGACCTGCCGTCATTCCTTCCTTGAATCTGGACAATAT TAATATTATCCGCCTGCACCCCAGTGCTTTCCGTATACTTGCCACCATTA TAAGCTCAACCCTTGCAACTTAATCTCCCAAAGCGTCTATTCCTTTGGCT CCCTCACAGTGTATCTGACTTCCTACCTTCGCGTGTACGACCCCACCATC ACCTACAACGACACCATCATAATTTATGCTTGCACAATCGCCGGGCAGGC CTGCCTGATGTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCC TCGCGGCAACATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCA TCGGGAGTTACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTT TGGATTTGGCGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATC GGTGGGAGCCCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGC TTTGGTTTGTCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAA CCCGGGAAATTTGAAACCGGATGTGGAGTATAAGGGCAAACTCTACTTTA GCTCCGGGTCCGTGACAGACGCCGTACCTGCGATGCTCTTAAAGCTTGGG GCTATTTACGGTGCGCTGTGCGTGTGTGGCATCCTCCTCCTGCAAGACCC GGTCTACAAAAAAATCGAAGAAGTCGAAGACGAGACAGGGGGGACGGGAG GCAATGGAGCCGGATTGTGTGGGAATTCCAGTGCACACAGCAACGGTAGC AGCAGCAGGAATGGAGGAGGGGGAGGGGAACGTGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGGGGT CTTCGCCGTTGCGGCGGAGGTTATGCGAGGATGAGGGAGATCACGAATCC GAGGAGCAGGAGCAGAAAGAAATAGAGTACCAGGGGCAGCGGCAGCAGGA CCAACGGGAGGGTGGAGGAGGGGATGGGAGAGGAAATGATGACTTTCTGA AGCTGCGCCCACTTTCGGTGAGCAACGAGGACCAGGAGGAGGGAGAGGAG GAGGACATGCATAGTTGGAACGCAGACATCGAAAGTCACGAACGCAAACG ACGCCTACACTACCACCACCACCACCAGCAGCAGCAGCATGAAAGTGGTG AAGAAGAGGAGGAGTACGACGTCACCCCCCAAGAGCTTCTGCGCTTACCG CAAGCCTACCATGTCTCCTTGTCCTTCACTTTAGGCGCCCTCTCCGGCCT CGTCACTTTAGCCACATACAAGAGCATTGGTATCACCTCCTTTCTCGACG ATCATTTCATGTCCGTCTACGTTGGTTCCTTCTCCTCCCTCGCCAATGCC CTCGGTCGCGTCTTCTGGGGTTGGGCCAGCGATAAGCTAGGCGCCTACCA TGCCCTCTACACCTTGTGTATCTGCCAGTCTTTTTTCCTCTTCACCTGGA TACTGACCGTGAGCGGGTGGAAGAATAAATGGCTCTACGCCGTCTGGGTC GCAGGCATCACGTTTTCCCATGGCGGAAATTTCGCGATTTACCCGGCCTT GATCTCTAATTTGTTTGGAAAGACAAACAGTGCGCCGAACTTCGGATTGA TTTTTTTGGGGTATGGGGTAGTGAGTTTGATGGGATTGGCTGTCTTGCCA CGTCTGGGGACGGGGGGCTTGACGCCCTTGTGTTGGATTTTGGGGGTGGT GGCATTGATGAGTGCAGGGAGTGTGTGGGGGTTGCACGCGTGTTATGCTT CTCCGAAAAGGGGAGGGAGGACCGGGAGGAGGAAGGCGGGGGGGAGGAAT GGTAGGGCTAGGTGGGGAGGGACAAGGGAGTGGCTATGGGTGCCGAAGGA GGGGGAGGAAGAAGGGGAAATGGAGGGGGAGGGGGGGCAGCAGTTGGTGC TTCAGCAGAAGATGTGA back to topprotein sequence of NO12G01190.1 >NO12G01190.1-protein ID=NO12G01190.1-protein|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp MFLGGKIELRLGPRLAATLGSCLLVGAPLLSSGVTSLWGMTFTYGVLFGF GGGLTYTVPLVCGYRWEPKRKGLVSGMVLSGFGLSALVFNQVQAALANPG NLKPDVEYKGKLYFSSGSVTDAVPAMLLKLGAIYGALCVCGILLLQDPVY KKIEEVEDETGGTGGNGAGLCGNSSAHSNGSSSRNGGGGGERGGGGGGGG GGGGGGGGGGGSEGSSPLRRRLCEDEGDHESEEQEQKEIEYQGQRQQDQR EGGGGDGRGNDDFLKLRPLSVSNEDQEEGEEEDMHSWNADIESHERKRRL HYHHHHQQQQHESGEEEEEYDVTPQELLRLPQAYHVSLSFTLGALSGLVT LATYKSIGITSFLDDHFMSVYVGSFSSLANALGRVFWGWASDKLGAYHAL YTLCICQSFFLFTWILTVSGWKNKWLYAVWVAGITFSHGGNFAIYPALIS NLFGKTNSAPNFGLIFLGYGVVSLMGLAVLPRLGTGGLTPLCWILGVVAL MSAGSVWGLHACYASPKRGGRTGRRKAGGRNGRARWGGTREWLWVPKEGE EEGEMEGEGGQQLVLQQKM* back to topmRNA from alignment at chr12:371959..374900+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01190.1 ID=NO12G01190.1|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2942bp|location=Sequence derived from alignment at chr12:371959..374900+ (Nannochloropsis oceanica) TTGCTTCTTGCTTACTGTGTGGCTATGGGGGGGGGCAGTGAGGGGACGAG
ATAACTCCACAAAATTTCTGAAAGTCGAATGGCGACTTTCTCATGTGGTC
AAAGACACGGACGGTCGGCTCGGATTGGTTTGTGAGCATGGGCATCTCCT
CGGCACGCAAGAGGCAGATGGGCCCTTTACTTTGTGCTTCGGCAACTTGA
ATGTCGTGGTCCCGTGGACACGAGCACCTGTAACTCTCAAACTGAATGCC
CGGATTAGAATGACGAAAGAGAGGATAGATAAGGATGGGGACTGAGCGGT
GCACATTTCCGCCTCTAGTGTAGGATGAACAGACCATAGGACGTCGGGAG
ACTTGGGGCCCGTTATCAAGCCGTTGAACTTCATGAAGAGGAAAACCAAG
GCTCGCTCCTCCTCCCTTGCGTCTGAGCTTCGAAGTCCACGCGAAACGCC
TTATACCTCCCCCAAACATAGCCCCTTAGATTTTTTTCCACCTTCTCATA
CCTATCACGCATTCTACTGGTGGGACAGGTGGAATTTATAGAGCAGTCCA
AGAGGCAAGCAAGACCCGCCGCCCCGCGCTCTGCCTCCGACGCACTCCAG
CCTCGCCATAAGGACTGAATCGTGATGCTTCATTACTTGCCCACGGGCCC
TAAGGCCGCAACTTTTGGCGGCTTTCTTCTTCACTTGGTCATGGGCGCGT
AAGTTCATGGCTGGTCAAGCTGTGTGGAGGAAAATACTAGAGACTTCACT
GTTTTGTCATGCCGACCTGCCGTCATTCCTTCCTTGAATCTGGACAATAT
TAATATTATCCGCCTGCACCCCAGTGCTTTCCGTATACTTGCCACCATTA
TAAGCTCAACCCTTGCAACTTAATCTCCCAAAGCGTCTATTCCTTTGGCT
CCCTCACAGTGTATCTGACTTCCTACCTTCGCGTGTACGACCCCACCATC
ACCTACAACGACACCATCATAATTTATGCTTGCACAATCGCCGGGCAGGC
CTGCCTGATGTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCC
TCGCGGCAACATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCA
TCGGGAGTTACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTT
TGGATTTGGCGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATC
GGTGGGAGCCCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGC
TTTGGTTTGTCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAA
CCCGGGAAATTTGAAACCGGATGTGGAGTATAAGGTAAGGAGGGAAGAAG
GGAAAGAGGAAGGTTTCGATTGGTTGGTATTGGACTGTAATCAGCAATTG
CTCGGGCTAATCCGTGTAGGAATTCGAAGCCCGCTAAAGAATTGAAGGAA
GACAAACAGAGACCCTGTCATTCAAATGAGTGGTCTGCGTGCGCCACGCG
AGAGGTTTCTCACACTCTTCAATTTTCTACCCTCCTCCCCATCCTTACCT
CCTCCATAGGGCAAACTCTACTTTAGCTCCGGGTCCGTGACAGACGCCGT
ACCTGCGATGCTCTTAAAGCTTGGGGCTATTTACGGTGCGCTGTGCGTGT
GTGGCATCCTCCTCCTGCAAGACCCGGTCTACAAAAAAATCGAAGAAGTC
GAAGACGAGACAGGGGGGACGGGAGGCAATGGAGCCGGATTGTGTGGGAA
TTCCAGTGCACACAGCAACGGTAGCAGCAGCAGGAATGGAGGAGGGGGAG
GGGAACGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAAGTGAGGGGTCTTCGCCGTTGCGGCGGAGGTTATG
CGAGGATGAGGGAGATCACGAATCCGAGGAGCAGGAGCAGAAAGAAATAG
AGTACCAGGGGCAGCGGCAGCAGGACCAACGGGAGGGTGGAGGAGGGGAT
GGGAGAGGAAATGATGACTTTCTGAAGCTGCGCCCACTTTCGGTGAGCAA
CGAGGACCAGGAGGAGGGAGAGGAGGAGGACATGCATAGTTGGAACGCAG
ACATCGAAAGTCACGAACGCAAACGACGCCTACACTACCACCACCACCAC
CAGCAGCAGCAGCATGAAAGTGGTGAAGAAGAGGAGGAGTACGACGTCAC
CCCCCAAGAGCTTCTGCGCTTACCGCAAGCCTACCATGTCTCCTTGTCCT
TCACTTTAGGCGCCCTCTCCGGCCTCGTCACTTTAGCCACATACAAGAGC
ATTGGTATCACCTCCTTTCTCGACGATCATTTCATGTCCGTCTACGTTGG
TTCCTTCTCCTCCCTCGCCAATGCCCTCGGTCGCGTCTTCTGGGGTTGGG
CCAGCGATAAGCTAGGCGCCTACCATGCCCTCTACACCTTGTGTATCTGC
CAGTCTTTTTTCCTCTTCACCTGGATACTGACCGTGAGCGGGTGGAAGAA
TAAATGGCTCTACGCCGTCTGGGTCGCAGGCATCACGTTTTCCCATGGCG
GAAATTTCGCGATTTACCCGGCCTTGATCTCTAATTTGTTTGGAAAGACA
AACAGTGCGCCGAACTTCGGATTGATTTTTTTGGGGTATGGGGTAGTGAG
TTTGATGGGATTGGCTGTCTTGCCACGTCTGGGGACGGGGGGCTTGACGC
CCTTGTGTTGGATTTTGGGGGTGGTGGCATTGATGAGTGCAGGGAGTGTG
TGGGGGTTGCACGCGTGTTATGCTTCTCCGAAAAGGGGAGGGAGGACCGG
GAGGAGGAAGGCGGGGGGGAGGAATGGTAGGGCTAGGTGGGGAGGGACAA
GGGAGTGGCTATGGGTGCCGAAGGAGGGGGAGGAAGAAGGGGAAATGGAG
GGGGAGGGGGGGCAGCAGTTGGTGCTTCAGCAGAAGATGTGA back to topCoding sequence (CDS) from alignment at chr12:371959..374900+ >NO12G01190.1 ID=NO12G01190.1|Name=NO12G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at chr12:371959..374900+ (Nannochloropsis oceanica) ATGTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCCTCGCGGC AACATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCATCGGGAG TTACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTTTGGATTT GGCGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATCGGTGGGA GCCCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGCTTTGGTT TGTCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAACCCGGGA AATTTGAAACCGGATGTGGAGTATAAGGGCAAACTCTACTTTAGCTCCGG GTCCGTGACAGACGCCGTACCTGCGATGCTCTTAAAGCTTGGGGCTATTT ACGGTGCGCTGTGCGTGTGTGGCATCCTCCTCCTGCAAGACCCGGTCTAC AAAAAAATCGAAGAAGTCGAAGACGAGACAGGGGGGACGGGAGGCAATGG AGCCGGATTGTGTGGGAATTCCAGTGCACACAGCAACGGTAGCAGCAGCA GGAATGGAGGAGGGGGAGGGGAACGTGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGGGGTCTTCGCC GTTGCGGCGGAGGTTATGCGAGGATGAGGGAGATCACGAATCCGAGGAGC AGGAGCAGAAAGAAATAGAGTACCAGGGGCAGCGGCAGCAGGACCAACGG GAGGGTGGAGGAGGGGATGGGAGAGGAAATGATGACTTTCTGAAGCTGCG CCCACTTTCGGTGAGCAACGAGGACCAGGAGGAGGGAGAGGAGGAGGACA TGCATAGTTGGAACGCAGACATCGAAAGTCACGAACGCAAACGACGCCTA CACTACCACCACCACCACCAGCAGCAGCAGCATGAAAGTGGTGAAGAAGA GGAGGAGTACGACGTCACCCCCCAAGAGCTTCTGCGCTTACCGCAAGCCT ACCATGTCTCCTTGTCCTTCACTTTAGGCGCCCTCTCCGGCCTCGTCACT TTAGCCACATACAAGAGCATTGGTATCACCTCCTTTCTCGACGATCATTT CATGTCCGTCTACGTTGGTTCCTTCTCCTCCCTCGCCAATGCCCTCGGTC GCGTCTTCTGGGGTTGGGCCAGCGATAAGCTAGGCGCCTACCATGCCCTC TACACCTTGTGTATCTGCCAGTCTTTTTTCCTCTTCACCTGGATACTGAC CGTGAGCGGGTGGAAGAATAAATGGCTCTACGCCGTCTGGGTCGCAGGCA TCACGTTTTCCCATGGCGGAAATTTCGCGATTTACCCGGCCTTGATCTCT AATTTGTTTGGAAAGACAAACAGTGCGCCGAACTTCGGATTGATTTTTTT GGGGTATGGGGTAGTGAGTTTGATGGGATTGGCTGTCTTGCCACGTCTGG GGACGGGGGGCTTGACGCCCTTGTGTTGGATTTTGGGGGTGGTGGCATTG ATGAGTGCAGGGAGTGTGTGGGGGTTGCACGCGTGTTATGCTTCTCCGAA AAGGGGAGGGAGGACCGGGAGGAGGAAGGCGGGGGGGAGGAATGGTAGGG CTAGGTGGGGAGGGACAAGGGAGTGGCTATGGGTGCCGAAGGAGGGGGAG GAAGAAGGGGAAATGGAGGGGGAGGGGGGGCAGCAGTTGGTGCTTCAGCA GAAGATGTGA back to top
|