NO12G01170.1, NO12G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01170.1
Unique NameNO12G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr12:367563..369123 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:367563..369123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01170.1 vs.
Match: EWM25910.1 (aldo keto reductase [Nannochloropsis gaditana])

HSP 1 Score: 572.8 bits (1475), Expect = 8.700e-160
Identity = 314/462 (67.97%), Postives = 347/462 (75.11%), Query Frame = 0 
Query:    1 MKKPSLSSWC-LVAAVIALAGCLRKSQAFNILSLSPSALSSRLPRAPATEFSPCFRTSTALHGSSLPPDIPSPTGENSRRRQSRFNKTPKQPEEPKKEARFSKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDIEEAFTFLEEAGLPMFDARELYPCEDFLGEMVNHWKKRQLKLQSDVKQI------TKPGPLYW-------GGEKA-----------------------------------IFEAVAQAKRMRLLDNVGVVGYVNEDDLRRVKTTAKSFGIDIKSNSFELSLANPAAALVDGTVAACKNMNIVPFANRPLAGGLAAGTYTMMDPSGGRSRKPRYTFPDLEPLYPIHKALREHAGKYTEKLGKRVNTAQVSINWVRAQGVIPLVGVKTAAQAKDMVEAAKWDLEPEDVKELSQVALDTYKKRRKITEMLAKARR 414
            MK   + S C +VAA +AL+  LR+S AF + +     LS  L              STAL  +SLPPD     G  SRRRQSRFNK PKQPEEPKK+ +FSKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDIEEAFT LEEAGLPMFDARELYPCEDFLGEMV HWKKRQLKLQS VKQ+      +    L+        GG +A                                   IFEAVAQAKRMRLLD+VGV+GY+ E+DLRR K  AK  GI+++SNSFELSLANPAAAL+DGTVAAC+ + I+P ANRPLAGGLAAGTYTMMDPSGGRSRKPRYTFPDLEPLYP+HKALRE AGKYTEKLG+RVNTAQVSINWVRAQGVIP+VGVKT AQAKDMV+AA WDLE EDV+ELS+VALDTY KRRKITE++AKARR
Sbjct:    1 MKNKMVKSACRIVAAAVALSPALRRSFAFQMPAQPHHFLSPSLVVRDGGILKLDQGFSTALRSASLPPD-GERAGLGSRRRQSRFNKEPKQPEEPKKDTKFSKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDIEEAFTCLEEAGLPMFDARELYPCEDFLGEMVAHWKKRQLKLQSGVKQVRPFIATSYQARLFGRGLLDVRGGRRAVLRALEHSLEALQATRVDLYQVTKPGPLYWGGEKAIFEAVAQAKRMRLLDHVGVIGYLTEEDLRRAKDVAKQHGINLRSNSFELSLANPAAALLDGTVAACEKLGIMPLANRPLAGGLAAGTYTMMDPSGGRSRKPRYTFPDLEPLYPVHKALREQAGKYTEKLGRRVNTAQVSINWVRAQGVIPVVGVKTGAQAKDMVDAAAWDLEAEDVQELSRVALDTYSKRRKITELIAKARR 461
The following BLAST results are available for this feature:
BLAST of NO12G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25910.18.700e-16067.97aldo keto reductase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01170NO12G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01170.1NO12G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01170.1.cds1NO12G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01170.1.cds2NO12G01170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01170.1.cds3NO12G01170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01170.1 ID=NO12G01170.1|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ATGAAGAAGCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGC
CCTGGCCGGCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCTCTGT
CACCATCAGCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTC
AGTCCGTGTTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCC
CGACATCCCTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTT
TCAATAAGACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTT
TCGAAAGACTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTC
GTGGGGGGATCGGCGGGATGGCTTCTTCTATGGTGATTATCCATCCAACG
CTATGGAACGTTCGCAAATGAGCTGCGGCGCCTTCAACGAACAAGACATC
GAAGAGGCCTTCACCTTTCTAGAGGAAGCCGGCTTGCCTATGTTTGATGC
TCGGGAGCTGTACCCTTGCGAAGATTTTTTGGGCGAGATGGTGAATCATT
GGAAGAAACGTCAATTGAAACTACAGAGTGATGTGAAGCAGATCACGAAA
CCCGGTCCGTTGTACTGGGGAGGTGAAAAGGCCATTTTTGAGGCCGTGGC
CCAAGCGAAACGCATGCGTTTGCTTGATAATGTCGGGGTGGTGGGGTACG
TGAACGAAGACGACTTACGACGCGTTAAGACTACTGCGAAATCCTTTGGG
ATAGACATCAAAAGCAATTCGTTCGAACTTTCGCTGGCGAACCCGGCGGC
GGCCTTGGTGGACGGAACCGTTGCGGCGTGCAAGAACATGAATATTGTGC
CCTTTGCAAATCGGCCATTGGCGGGGGGGCTGGCGGCGGGGACTTACACG
ATGATGGACCCTAGCGGGGGCAGAAGCCGGAAACCTAGGTACACCTTTCC
GGACTTGGAGCCGCTCTACCCCATCCATAAGGCCTTGAGGGAACATGCAG
GGAAGTACACGGAGAAACTCGGTAAACGCGTAAATACTGCCCAAGTGTCC
ATTAATTGGGTGCGAGCCCAGGGGGTGATTCCGCTCGTAGGGGTCAAAAC
TGCGGCGCAAGCCAAGGACATGGTGGAAGCCGCGAAATGGGATTTGGAGC
CTGAGGATGTGAAGGAGTTAAGTCAGGTGGCGTTAGATACGTACAAGAAA
CGGAGGAAGATCACTGAGATGCTGGCCAAGGCGCGTCGATAG
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protein sequence of NO12G01170.1

>NO12G01170.1-protein ID=NO12G01170.1-protein|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MKKPSLSSWCLVAAVIALAGCLRKSQAFNILSLSPSALSSRLPRAPATEF
SPCFRTSTALHGSSLPPDIPSPTGENSRRRQSRFNKTPKQPEEPKKEARF
SKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDI
EEAFTFLEEAGLPMFDARELYPCEDFLGEMVNHWKKRQLKLQSDVKQITK
PGPLYWGGEKAIFEAVAQAKRMRLLDNVGVVGYVNEDDLRRVKTTAKSFG
IDIKSNSFELSLANPAAALVDGTVAACKNMNIVPFANRPLAGGLAAGTYT
MMDPSGGRSRKPRYTFPDLEPLYPIHKALREHAGKYTEKLGKRVNTAQVS
INWVRAQGVIPLVGVKTAAQAKDMVEAAKWDLEPEDVKELSQVALDTYKK
RRKITEMLAKARR*
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mRNA from alignment at chr12:367563..369123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01170.1 ID=NO12G01170.1|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1561bp|location=Sequence derived from alignment at chr12:367563..369123- (Nannochloropsis oceanica)
ATGAAGAAGCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGC
CCTGGCCGGCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCTCTGT
CACCATCAGCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTC
AGTCCGTGTTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCC
CGACATCCCTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTT
TCAATAAGACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTT
TCGAAAGACTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTC
GTGGGGGGATCGGCGGGATGGCTTCTTCTATGGTGATGTAAGTTCGACGG
CAGAGAAGGAAGTGGAAGGGAAATGTAAGCGGTGCGGTAAAGAGATCAAA
GCAAGGATAGGAAAAGGTATAAAGAGAAGGGTTATCTTGTTTCGTATAAA
GCCACGTGCGAATCGACCCCTCCCTTTCTCCCTCTTTTCCTCCTTTTTAT
TCTTCTTCTCCAGTATCCATCCAACGCTATGGAACGTTCGCAAATGAGCT
GCGGCGCCTTCAACGAACAAGACATCGAAGAGGCCTTCACCTTTCTAGAG
GAAGCCGGCTTGCCTATGTTTGATGCTCGGGAGCTGTACCCTTGCGAAGA
TTTTTTGGGCGAGATGGTGAATCATTGGAAGAAACGTCAATTGAAACTAC
AGAGTGATGTGAAGCAGGTGCGTCCTTTTATTGCGACCAATTACCAGGCA
AGATTGTTCGGCAAGGGTCTGTTGGATGTCAGGGGGGGAGAAGGGCGGTT
TTGAAGGCGCTAGAAGGTAGTTTAGAAGCATTGCAGGCGACAAGGGTTGA
TTTATATCAGATCACGAAACCCGGTCCGTTGTACTGGGGAGGTGAAAAGG
CCATTTTTGAGGCCGTGGCCCAAGCGAAACGCATGCGTTTGCTTGATAAT
GTCGGGGTGGTGGGGTACGTGAACGAAGACGACTTACGACGCGTTAAGAC
TACTGCGAAATCCTTTGGGATAGACATCAAAAGCAATTCGTTCGAACTTT
CGCTGGCGAACCCGGCGGCGGCCTTGGTGGACGGAACCGTTGCGGCGTGC
AAGAACATGAATATTGTGCCCTTTGCAAATCGGCCATTGGCGGGGGGGCT
GGCGGCGGGGACTTACACGATGATGGACCCTAGCGGGGGCAGAAGCCGGA
AACCTAGGTACACCTTTCCGGACTTGGAGCCGCTCTACCCCATCCATAAG
GCCTTGAGGGAACATGCAGGGAAGTACACGGAGAAACTCGGTAAACGCGT
AAATACTGCCCAAGTGTCCATTAATTGGGTGCGAGCCCAGGGGGTGATTC
CGCTCGTAGGGGTCAAAACTGCGGCGCAAGCCAAGGACATGGTGGAAGCC
GCGAAATGGGATTTGGAGCCTGAGGATGTGAAGGAGTTAAGTCAGGTGGC
GTTAGATACGTACAAGAAACGGAGGAAGATCACTGAGATGCTGGCCAAGG
CGCGTCGATAG
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Coding sequence (CDS) from alignment at chr12:367563..369123-

>NO12G01170.1 ID=NO12G01170.1|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr12:367563..369123- (Nannochloropsis oceanica)
ATGAAGAAGCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGC
CCTGGCCGGCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCTCTGT
CACCATCAGCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTC
AGTCCGTGTTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCC
CGACATCCCTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTT
TCAATAAGACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTT
TCGAAAGACTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTC
GTGGGGGGATCGGCGGGATGGCTTCTTCTATGGTGATTATCCATCCAACG
CTATGGAACGTTCGCAAATGAGCTGCGGCGCCTTCAACGAACAAGACATC
GAAGAGGCCTTCACCTTTCTAGAGGAAGCCGGCTTGCCTATGTTTGATGC
TCGGGAGCTGTACCCTTGCGAAGATTTTTTGGGCGAGATGGTGAATCATT
GGAAGAAACGTCAATTGAAACTACAGAGTGATGTGAAGCAGATCACGAAA
CCCGGTCCGTTGTACTGGGGAGGTGAAAAGGCCATTTTTGAGGCCGTGGC
CCAAGCGAAACGCATGCGTTTGCTTGATAATGTCGGGGTGGTGGGGTACG
TGAACGAAGACGACTTACGACGCGTTAAGACTACTGCGAAATCCTTTGGG
ATAGACATCAAAAGCAATTCGTTCGAACTTTCGCTGGCGAACCCGGCGGC
GGCCTTGGTGGACGGAACCGTTGCGGCGTGCAAGAACATGAATATTGTGC
CCTTTGCAAATCGGCCATTGGCGGGGGGGCTGGCGGCGGGGACTTACACG
ATGATGGACCCTAGCGGGGGCAGAAGCCGGAAACCTAGGTACACCTTTCC
GGACTTGGAGCCGCTCTACCCCATCCATAAGGCCTTGAGGGAACATGCAG
GGAAGTACACGGAGAAACTCGGTAAACGCGTAAATACTGCCCAAGTGTCC
ATTAATTGGGTGCGAGCCCAGGGGGTGATTCCGCTCGTAGGGGTCAAAAC
TGCGGCGCAAGCCAAGGACATGGTGGAAGCCGCGAAATGGGATTTGGAGC
CTGAGGATGTGAAGGAGTTAAGTCAGGTGGCGTTAGATACGTACAAGAAA
CGGAGGAAGATCACTGAGATGCTGGCCAAGGCGCGTCGATAG
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Synonyms
Publications