NO12G01120.1, NO12G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01120.1
Unique NameNO12G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr12:353956..355512 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:353956..355512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01120.1 vs.
Match: EWM25901.1 (homoaconitate hydratase family protein [Nannochloropsis gaditana])

HSP 1 Score: 929.1 bits (2400), Expect = 6.000e-267
Identity = 465/523 (88.91%), Postives = 488/523 (93.31%), Query Frame = 0 
Query:    1 MAPATPAVALLGATLAFANAFVPPTPTVTSSSRFGSI----RMMAGSVDGAAASKAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRHPAETLAS-APAKNSVFAKK 519
            MAPA   V +LGATLA  NAFVPP P+  +S RF  +    R+ A   DG A++KAPPMTLTEKILARAAGKESVAPNDNVWV+ADNL+THDVCGPGTFGLFKKEFG  AKVWD+ERV+IIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVA+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKF+LNGEIPDYLLAKD+ILQ+IGDIGVAGATYRAMEFGG+AI QLSMEERQTLCNMAIEAGGKNGIIPAD VT  YVDARNAG+RPYTIF+ADPDA Y +KYAYDLSSLEPVVAKPHSPDNRALA++CRDIKIDRVYIGSCTGGKTEDFVAAARILQ NKVSVPTFLVPATRRVYDDLYSLT+GGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFS TR PAETLA+ APA  SVFAKK
Sbjct:    1 MAPAAQIVTMLGATLALCNAFVPPVPS--TSPRFSKLAAPRRLAAAGADG-ASTKAPPMTLTEKILARAAGKESVAPNDNVWVRADNLMTHDVCGPGTFGLFKKEFGANAKVWDRERVLIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFELNGEIPDYLLAKDMILQIIGDIGVAGATYRAMEFGGNAIRQLSMEERQTLCNMAIEAGGKNGIIPADEVTTAYVDARNAGSRPYTIFEADPDASYFAKYAYDLSSLEPVVAKPHSPDNRALARECRDIKIDRVYIGSCTGGKTEDFVAAARILQQNKVSVPTFLVPATRRVYDDLYSLTLGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSQTRQPAETLATKAPA--SVFAKK 518
The following BLAST results are available for this feature:
BLAST of NO12G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25901.16.000e-26788.91homoaconitate hydratase family protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01120NO12G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01120.1NO12G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01120.1.cds1NO12G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01120.1 ID=NO12G01120.1|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT
TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT
TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC
AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG
GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC
TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG
GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT
TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG
ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT
ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG
CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT
TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA
ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT
TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC
CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT
GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT
CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG
AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG
TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC
GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC
TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG
AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC
GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA
ATAAGGTGTCGGTCCCGACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT
GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTCGCGCAGATCTT
TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT
TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC
GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC
AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG
GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC
CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA
GAAGTAA
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protein sequence of NO12G01120.1

>NO12G01120.1-protein ID=NO12G01120.1-protein|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MAPATPAVALLGATLAFANAFVPPTPTVTSSSRFGSIRMMAGSVDGAAAS
KAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKK
EFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYD
ITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFA
TGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDI
GVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQE
YVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALA
KDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVY
DDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLC
VSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRH
PAETLASAPAKNSVFAKK*
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mRNA from alignment at chr12:353956..355512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01120.1 ID=NO12G01120.1|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr12:353956..355512+ (Nannochloropsis oceanica)
ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT
TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT
TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC
AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG
GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC
TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG
GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT
TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG
ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT
ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG
CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT
TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA
ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT
TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC
CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT
GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT
CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG
AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG
TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC
GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC
TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG
AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC
GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA
ATAAGGTGTCGGTCCCGACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT
GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTCGCGCAGATCTT
TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT
TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC
GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC
AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG
GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC
CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA
GAAGTAA
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Coding sequence (CDS) from alignment at chr12:353956..355512+

>NO12G01120.1 ID=NO12G01120.1|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr12:353956..355512+ (Nannochloropsis oceanica)
ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT
TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT
TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC
AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG
GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC
TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG
GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT
TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG
ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT
ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG
CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT
TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA
ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT
TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC
CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT
GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT
CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG
AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG
TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC
GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC
TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG
AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC
GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA
ATAAGGTGTCGGTCCCGACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT
GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTCGCGCAGATCTT
TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT
TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC
GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC
AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG
GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC
CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA
GAAGTAA
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Synonyms
Publications