NO12G01090.1, NO12G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01090.1
Unique NameNO12G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr12:344839..345954 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:344839..345954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01090.1 vs.
Match: CBN76612.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 223.0 bits (567), Expect = 1.200e-54
Identity = 124/278 (44.60%), Postives = 165/278 (59.35%), Query Frame = 0 
Query:   20 CCKVYVSEGRNQVVLDRLAEVARTASPGLCALVQRFTDAVYHRSNFTLGGP-PGPVLEVALRVIDEALENLDMTLHSDATHPRVGAVDHVSFHPLGST-PLEAARNVAIVLGQRVGEKWPVPVLMYGACSS-RSLAEVRRSTSYFKGLALDSEIPHADFGPTRIDPKLGLLCCGAVPYVQNYNIRLNTSEKAVAARVTRAVRSKDGGPEGVEALTLRHDRGFMEVACNLLDLSKTGPEKVLEIVKEAARENGVEVEEAYTIGLTGQEILEETERLLRE 295
            C  VYVSEGRN  +LD LAE ART +PG   L+++F D  YHR+ FT+GG  P  V   ++ V   A+  +D+  H +A HPR+G VDHVS HPLG     E A+   + +   +G+   +PVL+YG  ++ R LAEVRRST YF G  L + I  AD GP  +D   G+   G  P V NYNI L+T +K +A++VTR++R KDGG   VE+LTL+   G  E ACNLL   +T    VL + +E A   G+ V + Y  GLT +E L    RL  E
Sbjct:   36 CAVVYVSEGRNSTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEH-EAAHPRIGVVDHVSVHPLGGEGSQEIAQKAGLAIATALGKDVGLPVLLYGDLNNGRRLAEVRRSTPYFVGGELPATID-ADLGPNEVDASRGIATVGCTPLVTNYNILLSTDDKRLASKVTRSLREKDGGLPWVESLTLQRKDGTFEAACNLLRPKETTTANVLAVAEEQAAGVGIRVVDHYETGLTDEEALAAISRLSSE 311
The following BLAST results are available for this feature:
BLAST of NO12G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76612.11.200e-5444.60conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01090NO12G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01090.1NO12G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01090.1.cds1NO12G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01090.1 ID=NO12G01090.1|Name=NO12G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
AACAGACCTCCAAGCACAGGATAGCGGCAAGGCAGCAGCTTGAACCTCCT
CCTGTCTTGGCACCAGCAAGACAGCCCGACTCTCATAATCGTCATTCCCC
GAGCAAGCTGTCCAACCCATGCCCTTGACACCCCCCGTCATCGCTTCCCC
GCCGTCCTCTGCCCGTCTGCTCGTGTGTTGCAAGGTCTATGTCTCCGAAG
GCAGGAATCAAGTCGTGTTGGATCGCCTGGCCGAAGTGGCACGCACGGCC
TCTCCCGGGTTGTGTGCATTGGTCCAGCGCTTCACGGACGCCGTCTACCA
CCGCAGCAATTTTACATTGGGTGGGCCCCCGGGACCTGTGCTGGAGGTGG
CTTTGAGGGTGATTGACGAGGCTTTGGAGAATTTAGACATGACCCTGCAC
AGCGATGCCACCCATCCGCGGGTGGGCGCTGTGGATCATGTTTCCTTCCA
CCCCCTGGGGAGCACTCCGTTGGAGGCTGCCCGGAACGTCGCAATAGTAC
TAGGACAAAGGGTTGGGGAGAAGTGGCCTGTGCCGGTTTTGATGTATGGG
GCATGTAGTTCTAGATCGTTGGCGGAAGTGCGGAGGAGCACGTCCTATTT
CAAGGGGCTGGCACTTGACAGCGAGATACCCCATGCTGATTTCGGGCCTA
CCCGCATAGATCCCAAGTTGGGGTTGCTTTGTTGTGGTGCGGTGCCTTAT
GTCCAGAATTATAACATTCGGTTGAATACATCGGAGAAAGCGGTTGCGGC
CAGGGTGACGCGTGCGGTGCGAAGCAAGGATGGAGGACCGGAGGGGGTGG
AGGCCTTGACCTTGAGACATGACAGAGGGTTTATGGAAGTGGCGTGTAAT
TTACTCGATCTGAGTAAGACGGGTCCAGAGAAGGTTTTGGAGATTGTAAA
GGAGGCGGCGAGGGAGAATGGGGTTGAGGTGGAGGAGGCATATACGATTG
GTTTGACGGGGCAAGAGATATTGGAGGAGACGGAGCGATTATTGAGGGAA
GAAGGGGATAAGAGTAGGGTAAGAATGTGAGAAATATTGAAGAAGGAACC
AAAATGTAATGTAAAAAAAATGATGGATGACGATGATAGAAGAAATCTTT
TCGTCGTCATTGAATG
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protein sequence of NO12G01090.1

>NO12G01090.1-protein ID=NO12G01090.1-protein|Name=NO12G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MPLTPPVIASPPSSARLLVCCKVYVSEGRNQVVLDRLAEVARTASPGLCA
LVQRFTDAVYHRSNFTLGGPPGPVLEVALRVIDEALENLDMTLHSDATHP
RVGAVDHVSFHPLGSTPLEAARNVAIVLGQRVGEKWPVPVLMYGACSSRS
LAEVRRSTSYFKGLALDSEIPHADFGPTRIDPKLGLLCCGAVPYVQNYNI
RLNTSEKAVAARVTRAVRSKDGGPEGVEALTLRHDRGFMEVACNLLDLSK
TGPEKVLEIVKEAARENGVEVEEAYTIGLTGQEILEETERLLREEGDKSR
VRM*
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mRNA from alignment at chr12:344839..345954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01090.1 ID=NO12G01090.1|Name=NO12G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp|location=Sequence derived from alignment at chr12:344839..345954- (Nannochloropsis oceanica)
AACAGACCTCCAAGCACAGGATAGCGGCAAGGCAGCAGCTTGAACCTCCT
CCTGTCTTGGCACCAGCAAGACAGCCCGACTCTCATAATCGTCATTCCCC
GAGCAAGCTGTCCAACCCATGCCCTTGACACCCCCCGTCATCGCTTCCCC
GCCGTCCTCTGCCCGTCTGCTCGTGTGTTGCAAGGTCTATGTCTCCGAAG
GCAGGAATCAAGTCGTGTTGGATCGCCTGGCCGAAGTGGCACGCACGGCC
TCTCCCGGGTTGTGTGCATTGGTCCAGCGCTTCACGGACGCCGTCTACCA
CCGCAGCAATTTTACATTGGGTGGGCCCCCGGGACCTGTGCTGGAGGTGG
CTTTGAGGGTGATTGACGAGGCTTTGGAGAATTTAGACATGACCCTGCAC
AGCGATGCCACCCATCCGCGGGTGGGCGCTGTGGATCATGTTTCCTTCCA
CCCCCTGGGGAGCACTCCGTTGGAGGCTGCCCGGAACGTCGCAATAGTAC
TAGGACAAAGGGTTGGGGAGAAGTGGCCTGTGCCGGTTTTGATGTATGGG
GCATGTAGTTCTAGATCGTTGGCGGAAGTGCGGAGGAGCACGTCCTATTT
CAAGGGGCTGGCACTTGACAGCGAGATACCCCATGCTGATTTCGGGCCTA
CCCGCATAGATCCCAAGTTGGGGTTGCTTTGTTGTGGTGCGGTGCCTTAT
GTCCAGAATTATAACATTCGGTTGAATACATCGGAGAAAGCGGTTGCGGC
CAGGGTGACGCGTGCGGTGCGAAGCAAGGATGGAGGACCGGAGGGGGTGG
AGGCCTTGACCTTGAGACATGACAGAGGGTTTATGGAAGTGGCGTGTAAT
TTACTCGATCTGAGTAAGACGGGTCCAGAGAAGGTTTTGGAGATTGTAAA
GGAGGCGGCGAGGGAGAATGGGGTTGAGGTGGAGGAGGCATATACGATTG
GTTTGACGGGGCAAGAGATATTGGAGGAGACGGAGCGATTATTGAGGGAA
GAAGGGGATAAGAGTAGGGTAAGAATGTGAGAAATATTGAAGAAGGAACC
AAAATGTAATGTAAAAAAAATGATGGATGACGATGATAGAAGAAATCTTT
TCGTCGTCATTGAATG
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Coding sequence (CDS) from alignment at chr12:344839..345954-

>NO12G01090.1 ID=NO12G01090.1|Name=NO12G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr12:344839..345954- (Nannochloropsis oceanica)
ATGCCCTTGACACCCCCCGTCATCGCTTCCCCGCCGTCCTCTGCCCGTCT
GCTCGTGTGTTGCAAGGTCTATGTCTCCGAAGGCAGGAATCAAGTCGTGT
TGGATCGCCTGGCCGAAGTGGCACGCACGGCCTCTCCCGGGTTGTGTGCA
TTGGTCCAGCGCTTCACGGACGCCGTCTACCACCGCAGCAATTTTACATT
GGGTGGGCCCCCGGGACCTGTGCTGGAGGTGGCTTTGAGGGTGATTGACG
AGGCTTTGGAGAATTTAGACATGACCCTGCACAGCGATGCCACCCATCCG
CGGGTGGGCGCTGTGGATCATGTTTCCTTCCACCCCCTGGGGAGCACTCC
GTTGGAGGCTGCCCGGAACGTCGCAATAGTACTAGGACAAAGGGTTGGGG
AGAAGTGGCCTGTGCCGGTTTTGATGTATGGGGCATGTAGTTCTAGATCG
TTGGCGGAAGTGCGGAGGAGCACGTCCTATTTCAAGGGGCTGGCACTTGA
CAGCGAGATACCCCATGCTGATTTCGGGCCTACCCGCATAGATCCCAAGT
TGGGGTTGCTTTGTTGTGGTGCGGTGCCTTATGTCCAGAATTATAACATT
CGGTTGAATACATCGGAGAAAGCGGTTGCGGCCAGGGTGACGCGTGCGGT
GCGAAGCAAGGATGGAGGACCGGAGGGGGTGGAGGCCTTGACCTTGAGAC
ATGACAGAGGGTTTATGGAAGTGGCGTGTAATTTACTCGATCTGAGTAAG
ACGGGTCCAGAGAAGGTTTTGGAGATTGTAAAGGAGGCGGCGAGGGAGAA
TGGGGTTGAGGTGGAGGAGGCATATACGATTGGTTTGACGGGGCAAGAGA
TATTGGAGGAGACGGAGCGATTATTGAGGGAAGAAGGGGATAAGAGTAGG
GTAAGAATGTGA
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Synonyms
Publications