NO12G01070.1, NO12G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01070.1
Unique NameNO12G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2063
Alignment locationchr12:334761..336823 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:334761..336823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01070.1 vs.
Match: EWM25896.1 (zip transporter [Nannochloropsis gaditana])

HSP 1 Score: 573.5 bits (1477), Expect = 6.200e-160
Identity = 340/508 (66.93%), Postives = 383/508 (75.39%), Query Frame = 0 
Query:    1 MADVAEAAVEAEDQSSETLPLRIAAVFIIMAVSLLGCLFPLLVLDLNGRAKFGSNIPLTPSSRNKSDGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAEANETLGDLVDFPLAHFVAMMGSIVVLALSQIVDGLVTSMSERGKPPGPSGGAAEGAGGIGLVDLVRGASTSLSKVVISTPDPPLPLDRAPYCFPGDALERDEIEQQQQQQHLTPSHRLCPLTTSGNGTDSDSSNDAQHDSSLSALPTFSGRSKKPVGLSIDPPSTPIM-SPAV------PEEVPIQYPFVSPRAQSALKTALAAGAKQKELARHQQMFGRDNSFNHAGHDHGRGRGHNDAVHVVQAFKTHSLVIAYIMEVGIVFHSVLIGIGLGTATSSLNNTKTLLVAISVHQFFEGAGLSTCILEAGLSRKKNAMMFGLFSVTTSLGITIGIGISKIYEEGSRAGALVEGIFNAFAAGILIYLALVDILQEEFNRREVKKHKIWQIQMMMCVLLGAGVMSVIAIWA 502
            MAD+ E+A   +  S ETLPLRIA+VF+IM VS LGC+FPLLVLDL+GRAKFG N+PLTPSSRNK+DGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAEANETL +LVDFPLA FVAMMGSIVVLALSQ+VDG+V+SM  + +PPGPS       GG+ +V + R  S ++SKVVIS PD   P  RAP            +E+   Q+ LT S +   L  +  G D  S N+ QH          +GR KKP  L I PP  P M SP V      P     Q PFVSPRAQ++LKT L+A   +    + Q  FG D   NH+ H+   G GHNDAVHVVQAFK HSLVIAYIMEVGIVFHSVLIGIGLGTATSS+NNT+TLLVAISVHQFFEGAGLSTCILEA L R KNA+MFGLFS+TTSLGI IGIGISK+Y+E SR  ALVEGIFNAFAAGILIYLALVDILQEEF+RREV++HKIWQIQMMMCVLLGAG MSVIAIWA
Sbjct:    1 MADLDESAFGQD--SGETLPLRIASVFVIMVVSALGCMFPLLVLDLDGRAKFGGNLPLTPSSRNKTDGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAEANETLEELVDFPLAFFVAMMGSIVVLALSQVVDGVVSSMGRKSRPPGPS-----STGGVDMVSMGRDPSLNMSKVVISAPDTS-PSARAPSI---------HLEEAAAQEGLTASQKQF-LQAARQGADGASGNEHQHAPITPVGAALTGR-KKPTDLQIVPPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSA---RSLAVQKQPSFGSD-GHNHSFHE---GGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
The following BLAST results are available for this feature:
BLAST of NO12G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25896.16.200e-16066.93zip transporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01070NO12G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01070.1NO12G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01070.1.cds1NO12G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01070.1 ID=NO12G01070.1|Name=NO12G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp
AACAGCGCTGCACCGCGCGCCATTTATAAAATGGCCGACGTCGCAGAAGC
CGCCGTCGAAGCAGAGGATCAAAGTTCAGAGACGTTGCCCTTGCGCATTG
CAGCCGTGTTTATCATCATGGCGGTCTCTCTCTTAGGTTGTCTCTTCCCC
TTGCTCGTCCTTGACTTGAACGGCCGGGCCAAGTTTGGGAGCAATATTCC
CCTGACCCCTTCTTCACGGAACAAGAGCGACGGTGAGCGTGTCTTCCATG
GGGCGCACGCGATGCATCTGCTCAAGAGCTTTAGCGCGGGAATCATTCTC
TGCGTGGGGTTTGTGCACGTCCTAGCAGAGGCAAACGAAACCCTTGGAGA
CCTCGTTGATTTTCCTTTGGCACATTTTGTGGCTATGATGGGCTCTATCG
TTGTTCTAGCCCTCTCACAAATTGTCGACGGTCTTGTCACGAGCATGTCA
GAACGTGGCAAACCCCCCGGACCCTCGGGAGGAGCAGCTGAAGGCGCAGG
AGGGATTGGCCTGGTGGACCTTGTGAGGGGGGCAAGCACTTCTCTGAGCA
AGGTCGTGATTTCGACCCCGGACCCTCCTCTTCCCTTAGACAGAGCGCCG
TATTGTTTTCCTGGAGACGCACTTGAGCGTGATGAAATCGAGCAACAGCA
GCAGCAGCAGCACCTGACTCCATCCCATCGTCTGTGCCCCCTTACGACAA
GCGGGAACGGCACAGACAGCGACAGCAGCAACGACGCCCAGCACGACTCC
TCACTAAGCGCCCTCCCCACTTTCAGCGGTCGAAGTAAGAAGCCCGTGGG
GCTAAGCATCGACCCACCTTCCACGCCCATCATGTCCCCCGCTGTTCCGG
AAGAGGTCCCAATCCAATACCCCTTCGTCTCCCCTCGTGCGCAGTCCGCC
TTGAAAACCGCGTTGGCTGCCGGGGCTAAGCAAAAGGAGCTTGCGAGACA
CCAGCAGATGTTTGGGCGCGACAATAGTTTCAATCATGCGGGACACGACC
ATGGACGGGGGCGCGGACATAATGACGCCGTGCATGTTGTCCAAGCATTC
AAAACACATTCACTCGTCATCGCCTATATAATGGAGGTGGGGATCGTTTT
TCATTCCGTTTTGATTGGCATCGGCCTCGGCACAGCTACCTCCTCTTTAA
ACAACACCAAAACGCTGCTGGTCGCTATTTCCGTTCACCAGTTCTTTGAA
GGGGCTGGTCTTTCGACCTGTATTCTGGAAGCAGGGCTTTCCAGGAAGAA
AAACGCGATGATGTTTGGCTTGTTCTCTGTGACGACAAGTTTGGGGATCA
CGATTGGAATCGGGATAAGTAAGATTTATGAGGAGGGGTCGCGGGCGGGG
GCGCTTGTGGAAGGGATTTTCAATGCGTTTGCGGCTGGAATTTTGATATA
TTTGGCTTTGGTCGATATTTTACAGGAGGAGTTTAACAGACGGGAGGTGA
AGAAGCATAAGATTTGGCAGATTCAGATGATGATGTGTGTGTTGTTGGGG
GCCGGGGTGATGAGTGTGATTGCGATATGGGCGTAAGAGAGTTGAAGGGA
GGGAAGTGGGGAGAGGGAAGGGAGAGAGAGACGCATGGGCAAAAAGATGA
TGTGAGGGAGTTGGAGATGATGAGAAAGGGATCGACTCAGAGCTTGATGG
AGAAAATCAGTGAGAATCAGGGAAGGGGACATGTGTTCATAGCAGTTAAT
GTCGTTCTTCGAAATACGTTTTCTATACCCAAAACCAAGAGAGCGAAGAC
CTGTTGGATTGAAAAAATAAGCATCAGCAGCACTGTGCCGTGAGAAACGA
GAATTGACGAGCGCGCTTCCTCCGCTCTTGATACACCATATACATGAATG
ACTGGGAGTCTCCAGGGGGGAAAAAGATAGGCGAGGGAGAAAAGCGTGAA
GAGGTGGTGCAGCAGTCCTCACCACACACAGAAGGCAGAGAGAGAAAGAG
TCAGATTTTCTCGAACATGAAGTATAAGCAACGATGATCTAGAGCACTGA
ATTGTAAGGGAGAAGGAGAAGGGCAAAGAATGAATGCTGGCAAGTAAGCG
CCCAATGTTTTTG
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protein sequence of NO12G01070.1

>NO12G01070.1-protein ID=NO12G01070.1-protein|Name=NO12G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MADVAEAAVEAEDQSSETLPLRIAAVFIIMAVSLLGCLFPLLVLDLNGRA
KFGSNIPLTPSSRNKSDGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAE
ANETLGDLVDFPLAHFVAMMGSIVVLALSQIVDGLVTSMSERGKPPGPSG
GAAEGAGGIGLVDLVRGASTSLSKVVISTPDPPLPLDRAPYCFPGDALER
DEIEQQQQQQHLTPSHRLCPLTTSGNGTDSDSSNDAQHDSSLSALPTFSG
RSKKPVGLSIDPPSTPIMSPAVPEEVPIQYPFVSPRAQSALKTALAAGAK
QKELARHQQMFGRDNSFNHAGHDHGRGRGHNDAVHVVQAFKTHSLVIAYI
MEVGIVFHSVLIGIGLGTATSSLNNTKTLLVAISVHQFFEGAGLSTCILE
AGLSRKKNAMMFGLFSVTTSLGITIGIGISKIYEEGSRAGALVEGIFNAF
AAGILIYLALVDILQEEFNRREVKKHKIWQIQMMMCVLLGAGVMSVIAIW
A*
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mRNA from alignment at chr12:334761..336823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01070.1 ID=NO12G01070.1|Name=NO12G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr12:334761..336823- (Nannochloropsis oceanica)
AACAGCGCTGCACCGCGCGCCATTTATAAAATGGCCGACGTCGCAGAAGC
CGCCGTCGAAGCAGAGGATCAAAGTTCAGAGACGTTGCCCTTGCGCATTG
CAGCCGTGTTTATCATCATGGCGGTCTCTCTCTTAGGTTGTCTCTTCCCC
TTGCTCGTCCTTGACTTGAACGGCCGGGCCAAGTTTGGGAGCAATATTCC
CCTGACCCCTTCTTCACGGAACAAGAGCGACGGTGAGCGTGTCTTCCATG
GGGCGCACGCGATGCATCTGCTCAAGAGCTTTAGCGCGGGAATCATTCTC
TGCGTGGGGTTTGTGCACGTCCTAGCAGAGGCAAACGAAACCCTTGGAGA
CCTCGTTGATTTTCCTTTGGCACATTTTGTGGCTATGATGGGCTCTATCG
TTGTTCTAGCCCTCTCACAAATTGTCGACGGTCTTGTCACGAGCATGTCA
GAACGTGGCAAACCCCCCGGACCCTCGGGAGGAGCAGCTGAAGGCGCAGG
AGGGATTGGCCTGGTGGACCTTGTGAGGGGGGCAAGCACTTCTCTGAGCA
AGGTCGTGATTTCGACCCCGGACCCTCCTCTTCCCTTAGACAGAGCGCCG
TATTGTTTTCCTGGAGACGCACTTGAGCGTGATGAAATCGAGCAACAGCA
GCAGCAGCAGCACCTGACTCCATCCCATCGTCTGTGCCCCCTTACGACAA
GCGGGAACGGCACAGACAGCGACAGCAGCAACGACGCCCAGCACGACTCC
TCACTAAGCGCCCTCCCCACTTTCAGCGGTCGAAGTAAGAAGCCCGTGGG
GCTAAGCATCGACCCACCTTCCACGCCCATCATGTCCCCCGCTGTTCCGG
AAGAGGTCCCAATCCAATACCCCTTCGTCTCCCCTCGTGCGCAGTCCGCC
TTGAAAACCGCGTTGGCTGCCGGGGCTAAGCAAAAGGAGCTTGCGAGACA
CCAGCAGATGTTTGGGCGCGACAATAGTTTCAATCATGCGGGACACGACC
ATGGACGGGGGCGCGGACATAATGACGCCGTGCATGTTGTCCAAGCATTC
AAAACACATTCACTCGTCATCGCCTATATAATGGAGGTGGGGATCGTTTT
TCATTCCGTTTTGATTGGCATCGGCCTCGGCACAGCTACCTCCTCTTTAA
ACAACACCAAAACGCTGCTGGTCGCTATTTCCGTTCACCAGTTCTTTGAA
GGGGCTGGTCTTTCGACCTGTATTCTGGAAGCAGGGCTTTCCAGGAAGAA
AAACGCGATGATGTTTGGCTTGTTCTCTGTGACGACAAGTTTGGGGATCA
CGATTGGAATCGGGATAAGTAAGATTTATGAGGAGGGGTCGCGGGCGGGG
GCGCTTGTGGAAGGGATTTTCAATGCGTTTGCGGCTGGAATTTTGATATA
TTTGGCTTTGGTCGATATTTTACAGGAGGAGTTTAACAGACGGGAGGTGA
AGAAGCATAAGATTTGGCAGATTCAGATGATGATGTGTGTGTTGTTGGGG
GCCGGGGTGATGAGTGTGATTGCGATATGGGCGTAAGAGAGTTGAAGGGA
GGGAAGTGGGGAGAGGGAAGGGAGAGAGAGACGCATGGGCAAAAAGATGA
TGTGAGGGAGTTGGAGATGATGAGAAAGGGATCGACTCAGAGCTTGATGG
AGAAAATCAGTGAGAATCAGGGAAGGGGACATGTGTTCATAGCAGTTAAT
GTCGTTCTTCGAAATACGTTTTCTATACCCAAAACCAAGAGAGCGAAGAC
CTGTTGGATTGAAAAAATAAGCATCAGCAGCACTGTGCCGTGAGAAACGA
GAATTGACGAGCGCGCTTCCTCCGCTCTTGATACACCATATACATGAATG
ACTGGGAGTCTCCAGGGGGGAAAAAGATAGGCGAGGGAGAAAAGCGTGAA
GAGGTGGTGCAGCAGTCCTCACCACACACAGAAGGCAGAGAGAGAAAGAG
TCAGATTTTCTCGAACATGAAGTATAAGCAACGATGATCTAGAGCACTGA
ATTGTAAGGGAGAAGGAGAAGGGCAAAGAATGAATGCTGGCAAGTAAGCG
CCCAATGTTTTTG
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Coding sequence (CDS) from alignment at chr12:334761..336823-

>NO12G01070.1 ID=NO12G01070.1|Name=NO12G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at chr12:334761..336823- (Nannochloropsis oceanica)
ATGGCCGACGTCGCAGAAGCCGCCGTCGAAGCAGAGGATCAAAGTTCAGA
GACGTTGCCCTTGCGCATTGCAGCCGTGTTTATCATCATGGCGGTCTCTC
TCTTAGGTTGTCTCTTCCCCTTGCTCGTCCTTGACTTGAACGGCCGGGCC
AAGTTTGGGAGCAATATTCCCCTGACCCCTTCTTCACGGAACAAGAGCGA
CGGTGAGCGTGTCTTCCATGGGGCGCACGCGATGCATCTGCTCAAGAGCT
TTAGCGCGGGAATCATTCTCTGCGTGGGGTTTGTGCACGTCCTAGCAGAG
GCAAACGAAACCCTTGGAGACCTCGTTGATTTTCCTTTGGCACATTTTGT
GGCTATGATGGGCTCTATCGTTGTTCTAGCCCTCTCACAAATTGTCGACG
GTCTTGTCACGAGCATGTCAGAACGTGGCAAACCCCCCGGACCCTCGGGA
GGAGCAGCTGAAGGCGCAGGAGGGATTGGCCTGGTGGACCTTGTGAGGGG
GGCAAGCACTTCTCTGAGCAAGGTCGTGATTTCGACCCCGGACCCTCCTC
TTCCCTTAGACAGAGCGCCGTATTGTTTTCCTGGAGACGCACTTGAGCGT
GATGAAATCGAGCAACAGCAGCAGCAGCAGCACCTGACTCCATCCCATCG
TCTGTGCCCCCTTACGACAAGCGGGAACGGCACAGACAGCGACAGCAGCA
ACGACGCCCAGCACGACTCCTCACTAAGCGCCCTCCCCACTTTCAGCGGT
CGAAGTAAGAAGCCCGTGGGGCTAAGCATCGACCCACCTTCCACGCCCAT
CATGTCCCCCGCTGTTCCGGAAGAGGTCCCAATCCAATACCCCTTCGTCT
CCCCTCGTGCGCAGTCCGCCTTGAAAACCGCGTTGGCTGCCGGGGCTAAG
CAAAAGGAGCTTGCGAGACACCAGCAGATGTTTGGGCGCGACAATAGTTT
CAATCATGCGGGACACGACCATGGACGGGGGCGCGGACATAATGACGCCG
TGCATGTTGTCCAAGCATTCAAAACACATTCACTCGTCATCGCCTATATA
ATGGAGGTGGGGATCGTTTTTCATTCCGTTTTGATTGGCATCGGCCTCGG
CACAGCTACCTCCTCTTTAAACAACACCAAAACGCTGCTGGTCGCTATTT
CCGTTCACCAGTTCTTTGAAGGGGCTGGTCTTTCGACCTGTATTCTGGAA
GCAGGGCTTTCCAGGAAGAAAAACGCGATGATGTTTGGCTTGTTCTCTGT
GACGACAAGTTTGGGGATCACGATTGGAATCGGGATAAGTAAGATTTATG
AGGAGGGGTCGCGGGCGGGGGCGCTTGTGGAAGGGATTTTCAATGCGTTT
GCGGCTGGAATTTTGATATATTTGGCTTTGGTCGATATTTTACAGGAGGA
GTTTAACAGACGGGAGGTGAAGAAGCATAAGATTTGGCAGATTCAGATGA
TGATGTGTGTGTTGTTGGGGGCCGGGGTGATGAGTGTGATTGCGATATGG
GCGTAA
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Synonyms
Publications