NO12G01060.1, NO12G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01060.1
Unique NameNO12G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr12:334048..334746 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:334048..334746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01060.1 vs.
Match: EWM25905.1 (MD-2-related lipid-recognition [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 8.600e-20
Identity = 50/136 (36.76%), Postives = 80/136 (58.82%), Query Frame = 0 
Query:   13 LLKLMMASPSSGAPVTFSPCSDSATPYILESLNITPYPPRAGETVEIVAVGKSSIAVVDGSTIHTSFKQGPLTTPEKTYNLCSISSVTCPLAAGSLITTVMQHEIGRFAGDGIASGRVWVLDPKGKELACVNVAVE 149
            L+ L++   +  +PV F+ C +  +P +LES+ I PYP +AG T  +    +S++A+  GS +  SFK+GP     K Y++CS+S   CP+ A SL+   +  +I   A  G+A+G V V D  G E+AC+ V V+
Sbjct:   25 LVSLIVVPCALASPVLFTSCHEDESPLMLESMEINPYPVKAGGTSSVAVTARSTVALEQGSYVEMSFKEGPFMGAVKKYDMCSMSDQDCPIPANSLVKFELDFQINSRASKGVATGNVLVSDHTGAEIACIRVPVQ 160
The following BLAST results are available for this feature:
BLAST of NO12G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25905.18.600e-2036.76MD-2-related lipid-recognition [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01060NO12G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01060.1NO12G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01060.1.cds1NO12G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01060.1 ID=NO12G01060.1|Name=NO12G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
TGATTTGATAAAAATGACACACAATAGTTCCACAACTCACGCTTTATACC
CTTACTCCTCTCGTTCACGCACCCAAACCCCAAAAGGGGTCAAGCATGTT
TCGTCGACGCTTCGTTCTTCCGATTGCAGGGCTCCTCAAGTTGATGATGG
CCTCTCCGTCCTCGGGTGCGCCTGTCACTTTTAGTCCCTGCAGTGACAGC
GCCACACCCTATATTCTCGAATCATTAAATATTACTCCTTACCCTCCCCG
GGCCGGGGAGACAGTGGAGATCGTGGCGGTGGGAAAATCCAGCATTGCTG
TAGTTGACGGCAGCACCATCCATACGAGCTTCAAGCAAGGTCCCCTGACT
ACACCGGAGAAGACGTACAACCTTTGTTCGATCTCAAGCGTCACATGTCC
TTTGGCAGCAGGTAGCTTAATTACAACCGTCATGCAACATGAGATTGGGC
GCTTTGCGGGAGACGGCATTGCGAGTGGGCGAGTCTGGGTTTTGGACCCC
AAGGGGAAGGAACTAGCGTGTGTCAATGTTGCAGTCGAGACGCGAAACCA
CTGAGCGAAAAGAATATTTAAAGACCGGCTAGCAAAAAATATCAGTATAA
ACGACGGGAAGACACATGCGCTGTCATGTAAGAGATGTATTCAAGGATGT
GGAAAACATAGGCAACGGCGTCTCGGAACTATAGATAACCAACGGTCGT
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protein sequence of NO12G01060.1

>NO12G01060.1-protein ID=NO12G01060.1-protein|Name=NO12G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MFRRRFVLPIAGLLKLMMASPSSGAPVTFSPCSDSATPYILESLNITPYP
PRAGETVEIVAVGKSSIAVVDGSTIHTSFKQGPLTTPEKTYNLCSISSVT
CPLAAGSLITTVMQHEIGRFAGDGIASGRVWVLDPKGKELACVNVAVETR
NH*
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mRNA from alignment at chr12:334048..334746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01060.1 ID=NO12G01060.1|Name=NO12G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at chr12:334048..334746+ (Nannochloropsis oceanica)
TGATTTGATAAAAATGACACACAATAGTTCCACAACTCACGCTTTATACC
CTTACTCCTCTCGTTCACGCACCCAAACCCCAAAAGGGGTCAAGCATGTT
TCGTCGACGCTTCGTTCTTCCGATTGCAGGGCTCCTCAAGTTGATGATGG
CCTCTCCGTCCTCGGGTGCGCCTGTCACTTTTAGTCCCTGCAGTGACAGC
GCCACACCCTATATTCTCGAATCATTAAATATTACTCCTTACCCTCCCCG
GGCCGGGGAGACAGTGGAGATCGTGGCGGTGGGAAAATCCAGCATTGCTG
TAGTTGACGGCAGCACCATCCATACGAGCTTCAAGCAAGGTCCCCTGACT
ACACCGGAGAAGACGTACAACCTTTGTTCGATCTCAAGCGTCACATGTCC
TTTGGCAGCAGGTAGCTTAATTACAACCGTCATGCAACATGAGATTGGGC
GCTTTGCGGGAGACGGCATTGCGAGTGGGCGAGTCTGGGTTTTGGACCCC
AAGGGGAAGGAACTAGCGTGTGTCAATGTTGCAGTCGAGACGCGAAACCA
CTGAGCGAAAAGAATATTTAAAGACCGGCTAGCAAAAAATATCAGTATAA
ACGACGGGAAGACACATGCGCTGTCATGTAAGAGATGTATTCAAGGATGT
GGAAAACATAGGCAACGGCGTCTCGGAACTATAGATAACCAACGGTCGT
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Coding sequence (CDS) from alignment at chr12:334048..334746+

>NO12G01060.1 ID=NO12G01060.1|Name=NO12G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at chr12:334048..334746+ (Nannochloropsis oceanica)
ATGTTTCGTCGACGCTTCGTTCTTCCGATTGCAGGGCTCCTCAAGTTGAT
GATGGCCTCTCCGTCCTCGGGTGCGCCTGTCACTTTTAGTCCCTGCAGTG
ACAGCGCCACACCCTATATTCTCGAATCATTAAATATTACTCCTTACCCT
CCCCGGGCCGGGGAGACAGTGGAGATCGTGGCGGTGGGAAAATCCAGCAT
TGCTGTAGTTGACGGCAGCACCATCCATACGAGCTTCAAGCAAGGTCCCC
TGACTACACCGGAGAAGACGTACAACCTTTGTTCGATCTCAAGCGTCACA
TGTCCTTTGGCAGCAGGTAGCTTAATTACAACCGTCATGCAACATGAGAT
TGGGCGCTTTGCGGGAGACGGCATTGCGAGTGGGCGAGTCTGGGTTTTGG
ACCCCAAGGGGAAGGAACTAGCGTGTGTCAATGTTGCAGTCGAGACGCGA
AACCACTGA
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Synonyms
Publications