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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:321515..325137 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01020.2 vs.
Match: EWM25929.1 (acetyl- hydrolase transferase [Nannochloropsis gaditana]) HSP 1 Score: 730.3 bits (1884), Expect = 3.700e-207 Identity = 350/429 (81.59%), Postives = 399/429 (93.01%), Query Frame = 0
Query: 38 RSIWHTPHLERESDGGMIREDEPHLKRIGREPVYVKSALEAVTGIESGQRVVIQGAVATPTLLIDAMTHHGKSAKLKGVQVCHLHTEGSAPYAEKECSDIFHTTCFFVGSNMRKPVAEGRAEYVPIYLSEIPNLFRRRRLPIDVALVQVSPPDKHGFCSLGTSVDIMRAGVQCAKHVVGHVNAKMPRTLGDGLVHISQFDRVFEEDVDLPEHAASPLSPVETAIGKLIAENLISDGATLQLGIGSIPNAVLSGLTNHRDLGIHSETFSDGILPLVKAGNITNAKKKENQGRIVTAFCSGTRALYDFIDDNPMVKFLDVAYVNSSHVISKQPKMTAINSCVEIDLTGQVASDSIGPMIYSGVGGQVDFLRGASLNPEGKPILALPSRTNKGIARIVPLLKPGAGVVTPRALVHYVVTEYGIAFLFGKTLQ 467
R+I ++PH+ RESDGG++REDEPHL+R+G+EPV+V+SALEAV+ I SGQRVVIQGA+ATPTLLIDAMT +GKS LKGV+VCHLHTEG+APY E+EC DIF TTCFFVG NMRKPVAEGRAEYVPI LSEIPNLFRR+ LP+DVALVQVSPPDKHG+CSLGTSVDIMRAGVQCAKHVVGH+N +MPRTLGDGL+HISQFDRVF +DVD+PEHAA SP E+AIGKLIAENL+S+GATLQ+GIGSIPNAVL+ L++HRDLG+H+E FSDGILPLV++G ITNAKKKENQGRIVT+FCSGTR LYDFIDDNP+V+FLDV+YVN+SH+ISKQPKMTAIN+CVEID+TGQV SDSIGP IYSGVGGQVDFL+GASLNPEGKPILALPSRTNKGI RIVP +K GAGVVT RALVH+VVTE+GIA LFGK+LQ
Sbjct: 35 RNILNSPHVSRESDGGLVREDEPHLQRVGKEPVFVESALEAVSDIRSGQRVVIQGAIATPTLLIDAMTEYGKSVGLKGVKVCHLHTEGTAPYVEEECLDIFQTTCFFVGPNMRKPVAEGRAEYVPINLSEIPNLFRRKVLPVDVALVQVSPPDKHGYCSLGTSVDIMRAGVQCAKHVVGHLNERMPRTLGDGLIHISQFDRVFRKDVDIPEHAALSPSPAESAIGKLIAENLVSNGATLQMGIGSIPNAVLARLSSHRDLGVHTEMFSDGILPLVESGVITNAKKKENQGRIVTSFCSGTRRLYDFIDDNPLVRFLDVSYVNNSHIISKQPKMTAINACVEIDITGQVVSDSIGPKIYSGVGGQVDFLKGASLNPEGKPILALPSRTNKGIPRIVPTIKAGAGVVTGRALVHHVVTEHGIACLFGKSLQ 463
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01020.2 ID=NO12G01020.2|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2321bp CTTTGACTTGGTATTGCACTCGCCGTCCTGTGCGTTTGCCACATGGTTTC CTCCTTAGGTCCTGGGTCATTTTGAAAATAACTAACGTGAGCGTATAATG GAGACCAGATCAGGAGTCTTGTATACTCTTATGGTTTGGTGTTGGGCTGG CCTTCAGCATTGGATTCCTTGAAGACAATGCAGCCACCAATCGATGCGGC GCGGCATCTTATGTCCATGCAGTGTTTTCCTTGCACGTAACCCACAAGCC CATTGCCGCACGCTTATACCCAATACTACCACACACCACTACAAAGAAAA CAAGCCAAATGCTGGTTGTCCTCACCAACAGGGTGCGGGTTGCGCGTCTC GCGTCCCGCGCCGCCTCAGCTTCCGCTGCCGACCTCCCTCTCCCCCGTCC TTCCATGTTCCAAGCGGCGCGCAGCATTTGGCATACGCCCCACTTAGAGC GCGAGAGTGACGGCGGAATGATCCGCGAGGACGAGCCGCACCTAAAGCGC ATTGGCAGAGAGCCCGTGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGG CATTGAATCTGGCCAGCGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCA CCCTCCTCATCGACGCTATGACCCACCATGGGAAGAGCGCCAAGTTAAAG GGTGTCCAAGTTTGCCATCTCCACACTGAGGGCTCTGCGCCCTATGCTGA AAAAGAATGCTCGGATATTTTTCACACGACGTGTTTTTTCGTGGGTTCCA ACATGCGGAAGCCTGTCGCAGAAGGCCGAGCAGAGTATGTCCCCATCTAC CTCAGCGAGATCCCCAATCTTTTCCGTCGAAGGCGTTTGCCCATCGACGT GGCGTTGGTTCAGGTGTCGCCTCCGGACAAGCACGGCTTTTGCTCTCTGG GCACGAGCGTGGATATCATGAGGGCAGGGGTGCAATGCGCAAAGCACGTG GTGGGCCATGTTAACGCCAAGATGCCTCGGACGTTGGGGGATGGTCTGGT CCACATTTCCCAGTTCGACCGGGTGTTCGAAGAAGACGTGGACCTCCCCG AACACGCCGCCTCCCCCCTCTCCCCCGTGGAAACTGCCATCGGGAAGCTA ATCGCCGAGAATTTGATCTCGGATGGGGCGACCCTGCAATTGGGCATCGG CTCAATCCCAAATGCGGTTCTATCGGGCCTGACCAACCATCGTGACTTGG GGATCCATTCAGAAACATTTTCCGACGGGATCCTGCCGCTTGTCAAGGCG GGAAATATCACCAATGCCAAGAAGAAGGAGAATCAAGGCAGAATCGTCAC GGCGTTCTGCAGCGGCACCCGGGCCTTGTACGACTTTATCGATGACAACC CGATGGTGAAGTTCCTGGACGTGGCCTACGTGAACAGCTCCCACGTCATC TCGAAGCAACCCAAAATGACCGCCATCAACTCCTGTGTGGAGATCGACCT CACGGGCCAGGTAGCAAGTGATAGCATCGGCCCGATGATTTATTCAGGGG TTGGTGGCCAGGTGGATTTCCTGAGAGGGGCCTCGCTCAACCCCGAGGGC AAGCCCATCCTGGCCTTGCCATCGAGGACGAATAAAGGCATCGCAAGGAT CGTGCCCCTGCTTAAGCCGGGAGCGGGCGTTGTTACTCCCAGGGCGTTGG TGCATTATGTGGTGACGGAATACGGGATTGCGTTTTTGTTTGGGAAGACC TTGCAGGTATGACAGGAACTTCACTTCCTCCCTCCCGCCCTCCATTCCTA CGAATCTCCAATTGTTTTGTGTTGCACCTCCCAGCCTTTTCCTTCCCATC ACATACTCCTTTGCGAACATGAGAAGACCACTCATTTCTCTCTCACTGTC CCTATGCCTTTCTTCCTCCCTTCCTCCTCCCTCCCTTCCTCCTCCCTCCC TTCCTTCCTCCAGGAACGAGCCAAGGCCCTGATTGAGATAGCGCACCCCG ACGACAGAGAATCCCTCGAGAAGGCAGCCCACGCCCGCTTTCGCTGCTAG TCGGAGGAAGGGAGGGAAGGAGGAAGAGAGGGCAATGATTTTTTTTTTTG ACATGTGGGAGCGAGGAAATTTGTGTATTTTGTAAAACGTTTGATTATCT ATCTGGAGGTGTGACATGAGGGAGGAGGGGGGGAAATGATACCCCATACA AGGAGCGCGGGCAGAACGGATTGAGAAGGAAAATAGCGAGGAGAATTTGG TGGAAATGAAGAGATCAGAAGAAATGGGGAGATGGCAGGTATACTGCTAC CAAACGTATGCAGGGAAATCGATGTGGGGTGAGGGCGAGTTACAAAGCGA CATTTGTGTGCTCATTATTGA back to topprotein sequence of NO12G01020.2 >NO12G01020.2-protein ID=NO12G01020.2-protein|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp MLVVLTNRVRVARLASRAASASAADLPLPRPSMFQAARSIWHTPHLERES DGGMIREDEPHLKRIGREPVYVKSALEAVTGIESGQRVVIQGAVATPTLL IDAMTHHGKSAKLKGVQVCHLHTEGSAPYAEKECSDIFHTTCFFVGSNMR KPVAEGRAEYVPIYLSEIPNLFRRRRLPIDVALVQVSPPDKHGFCSLGTS VDIMRAGVQCAKHVVGHVNAKMPRTLGDGLVHISQFDRVFEEDVDLPEHA ASPLSPVETAIGKLIAENLISDGATLQLGIGSIPNAVLSGLTNHRDLGIH SETFSDGILPLVKAGNITNAKKKENQGRIVTAFCSGTRALYDFIDDNPMV KFLDVAYVNSSHVISKQPKMTAINSCVEIDLTGQVASDSIGPMIYSGVGG QVDFLRGASLNPEGKPILALPSRTNKGIARIVPLLKPGAGVVTPRALVHY VVTEYGIAFLFGKTLQV* back to topmRNA from alignment at chr12:321515..325137+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01020.2 ID=NO12G01020.2|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=3623bp|location=Sequence derived from alignment at chr12:321515..325137+ (Nannochloropsis oceanica) CTTTGACTTGGTATTGCACTCGCCGTCCTGTGCGTTTGCCACATGGTTTC
CTCCTTAGGTCCTGGGTCATTTTGAAAATAACTAACGTGAGCGTATAATG
GAGACCAGATCAGGAGTCTTGTATACTCTTATGGTTTGGTGTTGGGCTGG
CCTTCAGCATTGGATTCCTTGAAGACAATGCAGCCACCAATCGATGCGGC
GCGGCATCTTATGTCCATGCAGTGTTTTCCTTGCACGTAACCCACAAGCC
CATTGCCGCACGCTTATACCCAATACTACCACACACCACTACAAAGAAAA
CAAGCCAAATGCTGGTTGTCCTCACCAACAGGGTGCGGGTTGCGCGTCTC
GCGTCCCGCGCCGCCTCAGCTTCCGCTGCCGACCTCCCTCTCCCCCGTCC
TTCCATGTTCCAAGCGGCGCGCAGCATTTGGCATACGCCCCACTTAGAGC
GCGAGAGTGACGGCGGAATGATCCGCGAGGACGAGCCGCACCTAAAGCGC
ATTGGCAGAGAGTAAGTTTGGGTTGGGGTATCGGCTGTAGGCACAAGGTT
TTCAGGATTGTTTGGACACCATCCCTTCTTGCCTCGTAGCTGAAGTAAAT
TTCTTTACAGCTTTCGACTGACGTATTGAGTGCCATTCTTCGACACCTTC
TTTATCGACTGTCCCCTTTCGAGCCCCAGGGAAATGGAATGATAAGGGGA
AAGTCGTCGCTCTGTAGTCACGTCCCTCGTTCATTCCTTCTCACACTCGA
TGTATACACGACACGGGGGCACGGGAAGTTATGCCAAAATCTCTGAGCTC
GTCTGATAAGTCGCCATGTAGGATTTGAAATGTGACCAGATACATGAGTT
CTGGGTAGCATCCTTGTTAGTCGTCCAATTTGATCATTGAACTTAACATT
CATCTCCACCACCTCATCTCTTTCTCCTACCCCCACAGGGGACCACGAAT
TCAGTTTTAAAAATATTCGTTTGTATTCGGACTAAGTCTTCCTCTCCCAA
CTCATATAGGCCCGTGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGGCA
TTGAATCTGGCCAGCGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCACC
CTCCTCATCGACGCTATGACCCACCATGGGAAGAGCGCCAAGTTAAAGGG
TGTCCAAGTTTGCCATCTCCACACTGAGGGCTCTGCGCCCTATGCTGAAA
AAGAATGCTCGGATATTTTTCACACGACGTGTTTTTTCGTGGGTTCCAAC
ATGCGGAAGCCTGTCGCAGAAGGCCGAGCAGAGTATGGTAAGTGCTTCAC
CGTGTGTGTTTGCCTTCTTTCGTTATTTCCCGCCCTTTCCCCCCCCACTC
TTTCTCTCTCGGTGTTTCTCTATTTATCATCTAGACGTGCTTACTCGTGG
CGTTCTAAGCCTCCTTTAATTTTACTAGCCCTCTACTGGACCAGCGAGAT
CCCATGTTTCCTCCTTCTCCCACGGTGACAACGAAACCGCTTGTCCGACG
ACGTCGCGGTCGTCTAAGGCTCTTCTCTTCACAATCACAGCGTCACACCC
TCCCTTGTCCCCCCCGTTTACTTCCCTCCAGTCCCCATCTACCTCAGCGA
GATCCCCAATCTTTTCCGTCGAAGGCGTTTGCCCATCGACGTGGCGTTGG
TTCAGGTGTCGCCTCCGGACAAGCACGGCTTTTGCTCTCTGGGCACGAGC
GTGGATATCATGAGGGCAGGGGTGCAATGCGCAAAGCACGTGGTGGGCCA
TGTTAACGCCAAGATGCCTCGGACGTTGGGGGATGGTCTGGTCCACATTT
CCCAGTTCGACCGGGTGTTCGAGTAAGGAGTACCCTTGGCCCTTGACATA
ACAAGTTTTGGGGGATTTATTTTCATGGCAATCTAATCTCATCCATATCT
CTCTCCCTCCCCTCTTCCTTTTTTCCTTCCCTCCCCCCTTTCCTATCCAC
GACAGAGAAGACGTGGACCTCCCCGAACACGCCGCCTCCCCCCTCTCCCC
CGTGGAAACTGCCATCGGGAAGCTAATCGCCGAGAATTTGATCTCGGATG
GGGCGACCCTGCAATTGGGCATCGGCTCAATCCCAAATGCGGTTCTATCG
GGCCTGACCAACCATCGTGACTTGGGGATCCATTCAGGTACTTTTGGCCC
TTTCAACACATATCTCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCCCT
CCTTCCCTCCATTTCTCCCCTGCACAGCCCTTCTCCAGGCCCACGTTTCC
GCTGGTTTACCTTCTTTCACCTTCCCTTTTCTCCCCCCTCCTTCGTCTCT
TCCCGCGGGCACTAACTCGTGCCCCTCATCCTCCCCCCTCCCTCTCTTCT
CCCTGCCCTCCTAAACCCCACAGAAACATTTTCCGACGGGATCCTGCCGC
TTGTCAAGGCGGGAAATATCACCAATGCCAAGAAGAAGGAGAATCAAGGC
AGAATCGTCACGGCGTTCTGCAGCGGCACCCGGGCCTTGTACGACTTTAT
CGATGACAACCCGATGGTGAAGTTCCTGGTAGGTAGTGGCGGCGTATCCC
TGTATAAACCGAGTGCCGCTATCAACCTCATGCTCCCTTTTTAACTAAAC
GAGAAGAACTGAGGTAAATGCAATTCATATTATTTTATCCCTCCCTCCCT
CCCTCCATCCATCCCTCAGGACGTGGCCTACGTGAACAGCTCCCACGTCA
TCTCGAAGCAACCCAAAATGACCGCCATCAACTCCTGTGTGGAGATCGAC
CTCACGGGCCAGGTAGCAAGTGATAGCATCGGCCCGATGATTTATTCAGG
GGTTGGTGGCCAGGTGGATTTCCTGAGAGGGGCCTCGCTCAACCCCGAGG
GCAAGCCCATCCTGGCCTTGCCATCGAGGACGAATAAAGGCATCGCAAGG
ATCGTGCCCCTGCTTAAGCCGGGAGCGGGCGTTGTTACTCCCAGGGCGTT
GGTGCATTATGTGGTGACGGAATACGGGATTGCGTTTTTGTTTGGGAAGA
CCTTGCAGGTATGACAGGAACTTCACTTCCTCCCTCCCGCCCTCCATTCC
TACGAATCTCCAATTGTTTTGTGTTGCACCTCCCAGCCTTTTCCTTCCCA
TCACATACTCCTTTGCGAACATGAGAAGACCACTCATTTCTCTCTCACTG
TCCCTATGCCTTTCTTCCTCCCTTCCTCCTCCCTCCCTTCCTCCTCCCTC
CCTTCCTTCCTCCAGGAACGAGCCAAGGCCCTGATTGAGATAGCGCACCC
CGACGACAGAGAATCCCTCGAGAAGGCAGCCCACGCCCGCTTTCGCTGCT
AGTCGGAGGAAGGGAGGGAAGGAGGAAGAGAGGGCAATGATTTTTTTTTT
TGACATGTGGGAGCGAGGAAATTTGTGTATTTTGTAAAACGTTTGATTAT
CTATCTGGAGGTGTGACATGAGGGAGGAGGGGGGGAAATGATACCCCATA
CAAGGAGCGCGGGCAGAACGGATTGAGAAGGAAAATAGCGAGGAGAATTT
GGTGGAAATGAAGAGATCAGAAGAAATGGGGAGATGGCAGGTATACTGCT
ACCAAACGTATGCAGGGAAATCGATGTGGGGTGAGGGCGAGTTACAAAGC
GACATTTGTGTGCTCATTATTGA back to topCoding sequence (CDS) from alignment at chr12:321515..325137+ >NO12G01020.2 ID=NO12G01020.2|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr12:321515..325137+ (Nannochloropsis oceanica) ATGCTGGTTGTCCTCACCAACAGGGTGCGGGTTGCGCGTCTCGCGTCCCG CGCCGCCTCAGCTTCCGCTGCCGACCTCCCTCTCCCCCGTCCTTCCATGT TCCAAGCGGCGCGCAGCATTTGGCATACGCCCCACTTAGAGCGCGAGAGT GACGGCGGAATGATCCGCGAGGACGAGCCGCACCTAAAGCGCATTGGCAG AGAGCCCGTGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGGCATTGAAT CTGGCCAGCGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCACCCTCCTC ATCGACGCTATGACCCACCATGGGAAGAGCGCCAAGTTAAAGGGTGTCCA AGTTTGCCATCTCCACACTGAGGGCTCTGCGCCCTATGCTGAAAAAGAAT GCTCGGATATTTTTCACACGACGTGTTTTTTCGTGGGTTCCAACATGCGG AAGCCTGTCGCAGAAGGCCGAGCAGAGTATGTCCCCATCTACCTCAGCGA GATCCCCAATCTTTTCCGTCGAAGGCGTTTGCCCATCGACGTGGCGTTGG TTCAGGTGTCGCCTCCGGACAAGCACGGCTTTTGCTCTCTGGGCACGAGC GTGGATATCATGAGGGCAGGGGTGCAATGCGCAAAGCACGTGGTGGGCCA TGTTAACGCCAAGATGCCTCGGACGTTGGGGGATGGTCTGGTCCACATTT CCCAGTTCGACCGGGTGTTCGAAGAAGACGTGGACCTCCCCGAACACGCC GCCTCCCCCCTCTCCCCCGTGGAAACTGCCATCGGGAAGCTAATCGCCGA GAATTTGATCTCGGATGGGGCGACCCTGCAATTGGGCATCGGCTCAATCC CAAATGCGGTTCTATCGGGCCTGACCAACCATCGTGACTTGGGGATCCAT TCAGAAACATTTTCCGACGGGATCCTGCCGCTTGTCAAGGCGGGAAATAT CACCAATGCCAAGAAGAAGGAGAATCAAGGCAGAATCGTCACGGCGTTCT GCAGCGGCACCCGGGCCTTGTACGACTTTATCGATGACAACCCGATGGTG AAGTTCCTGGACGTGGCCTACGTGAACAGCTCCCACGTCATCTCGAAGCA ACCCAAAATGACCGCCATCAACTCCTGTGTGGAGATCGACCTCACGGGCC AGGTAGCAAGTGATAGCATCGGCCCGATGATTTATTCAGGGGTTGGTGGC CAGGTGGATTTCCTGAGAGGGGCCTCGCTCAACCCCGAGGGCAAGCCCAT CCTGGCCTTGCCATCGAGGACGAATAAAGGCATCGCAAGGATCGTGCCCC TGCTTAAGCCGGGAGCGGGCGTTGTTACTCCCAGGGCGTTGGTGCATTAT GTGGTGACGGAATACGGGATTGCGTTTTTGTTTGGGAAGACCTTGCAGGT ATGA back to top
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