NO12G01020.2, NO12G01020.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01020.2
Unique NameNO12G01020.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2321
Alignment locationchr12:321515..325137 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:321515..325137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01020.2 vs.
Match: EWM25929.1 (acetyl- hydrolase transferase [Nannochloropsis gaditana])

HSP 1 Score: 730.3 bits (1884), Expect = 3.700e-207
Identity = 350/429 (81.59%), Postives = 399/429 (93.01%), Query Frame = 0
Query:   38 RSIWHTPHLERESDGGMIREDEPHLKRIGREPVYVKSALEAVTGIESGQRVVIQGAVATPTLLIDAMTHHGKSAKLKGVQVCHLHTEGSAPYAEKECSDIFHTTCFFVGSNMRKPVAEGRAEYVPIYLSEIPNLFRRRRLPIDVALVQVSPPDKHGFCSLGTSVDIMRAGVQCAKHVVGHVNAKMPRTLGDGLVHISQFDRVFEEDVDLPEHAASPLSPVETAIGKLIAENLISDGATLQLGIGSIPNAVLSGLTNHRDLGIHSETFSDGILPLVKAGNITNAKKKENQGRIVTAFCSGTRALYDFIDDNPMVKFLDVAYVNSSHVISKQPKMTAINSCVEIDLTGQVASDSIGPMIYSGVGGQVDFLRGASLNPEGKPILALPSRTNKGIARIVPLLKPGAGVVTPRALVHYVVTEYGIAFLFGKTLQ 467
            R+I ++PH+ RESDGG++REDEPHL+R+G+EPV+V+SALEAV+ I SGQRVVIQGA+ATPTLLIDAMT +GKS  LKGV+VCHLHTEG+APY E+EC DIF TTCFFVG NMRKPVAEGRAEYVPI LSEIPNLFRR+ LP+DVALVQVSPPDKHG+CSLGTSVDIMRAGVQCAKHVVGH+N +MPRTLGDGL+HISQFDRVF +DVD+PEHAA   SP E+AIGKLIAENL+S+GATLQ+GIGSIPNAVL+ L++HRDLG+H+E FSDGILPLV++G ITNAKKKENQGRIVT+FCSGTR LYDFIDDNP+V+FLDV+YVN+SH+ISKQPKMTAIN+CVEID+TGQV SDSIGP IYSGVGGQVDFL+GASLNPEGKPILALPSRTNKGI RIVP +K GAGVVT RALVH+VVTE+GIA LFGK+LQ
Sbjct:   35 RNILNSPHVSRESDGGLVREDEPHLQRVGKEPVFVESALEAVSDIRSGQRVVIQGAIATPTLLIDAMTEYGKSVGLKGVKVCHLHTEGTAPYVEEECLDIFQTTCFFVGPNMRKPVAEGRAEYVPINLSEIPNLFRRKVLPVDVALVQVSPPDKHGYCSLGTSVDIMRAGVQCAKHVVGHLNERMPRTLGDGLIHISQFDRVFRKDVDIPEHAALSPSPAESAIGKLIAENLVSNGATLQMGIGSIPNAVLARLSSHRDLGVHTEMFSDGILPLVESGVITNAKKKENQGRIVTSFCSGTRRLYDFIDDNPLVRFLDVSYVNNSHIISKQPKMTAINACVEIDITGQVVSDSIGPKIYSGVGGQVDFLKGASLNPEGKPILALPSRTNKGIPRIVPTIKAGAGVVTGRALVHHVVTEHGIACLFGKSLQ 463          
The following BLAST results are available for this feature:
BLAST of NO12G01020.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25929.13.700e-20781.59acetyl- hydrolase transferase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01020NO12G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01020.2NO12G01020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01020.2.cds1NO12G01020.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01020.2.cds2NO12G01020.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01020.2.cds3NO12G01020.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01020.2.cds4NO12G01020.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01020.2.cds5NO12G01020.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01020.2.cds6NO12G01020.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01020.2 ID=NO12G01020.2|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2321bp
CTTTGACTTGGTATTGCACTCGCCGTCCTGTGCGTTTGCCACATGGTTTC
CTCCTTAGGTCCTGGGTCATTTTGAAAATAACTAACGTGAGCGTATAATG
GAGACCAGATCAGGAGTCTTGTATACTCTTATGGTTTGGTGTTGGGCTGG
CCTTCAGCATTGGATTCCTTGAAGACAATGCAGCCACCAATCGATGCGGC
GCGGCATCTTATGTCCATGCAGTGTTTTCCTTGCACGTAACCCACAAGCC
CATTGCCGCACGCTTATACCCAATACTACCACACACCACTACAAAGAAAA
CAAGCCAAATGCTGGTTGTCCTCACCAACAGGGTGCGGGTTGCGCGTCTC
GCGTCCCGCGCCGCCTCAGCTTCCGCTGCCGACCTCCCTCTCCCCCGTCC
TTCCATGTTCCAAGCGGCGCGCAGCATTTGGCATACGCCCCACTTAGAGC
GCGAGAGTGACGGCGGAATGATCCGCGAGGACGAGCCGCACCTAAAGCGC
ATTGGCAGAGAGCCCGTGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGG
CATTGAATCTGGCCAGCGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCA
CCCTCCTCATCGACGCTATGACCCACCATGGGAAGAGCGCCAAGTTAAAG
GGTGTCCAAGTTTGCCATCTCCACACTGAGGGCTCTGCGCCCTATGCTGA
AAAAGAATGCTCGGATATTTTTCACACGACGTGTTTTTTCGTGGGTTCCA
ACATGCGGAAGCCTGTCGCAGAAGGCCGAGCAGAGTATGTCCCCATCTAC
CTCAGCGAGATCCCCAATCTTTTCCGTCGAAGGCGTTTGCCCATCGACGT
GGCGTTGGTTCAGGTGTCGCCTCCGGACAAGCACGGCTTTTGCTCTCTGG
GCACGAGCGTGGATATCATGAGGGCAGGGGTGCAATGCGCAAAGCACGTG
GTGGGCCATGTTAACGCCAAGATGCCTCGGACGTTGGGGGATGGTCTGGT
CCACATTTCCCAGTTCGACCGGGTGTTCGAAGAAGACGTGGACCTCCCCG
AACACGCCGCCTCCCCCCTCTCCCCCGTGGAAACTGCCATCGGGAAGCTA
ATCGCCGAGAATTTGATCTCGGATGGGGCGACCCTGCAATTGGGCATCGG
CTCAATCCCAAATGCGGTTCTATCGGGCCTGACCAACCATCGTGACTTGG
GGATCCATTCAGAAACATTTTCCGACGGGATCCTGCCGCTTGTCAAGGCG
GGAAATATCACCAATGCCAAGAAGAAGGAGAATCAAGGCAGAATCGTCAC
GGCGTTCTGCAGCGGCACCCGGGCCTTGTACGACTTTATCGATGACAACC
CGATGGTGAAGTTCCTGGACGTGGCCTACGTGAACAGCTCCCACGTCATC
TCGAAGCAACCCAAAATGACCGCCATCAACTCCTGTGTGGAGATCGACCT
CACGGGCCAGGTAGCAAGTGATAGCATCGGCCCGATGATTTATTCAGGGG
TTGGTGGCCAGGTGGATTTCCTGAGAGGGGCCTCGCTCAACCCCGAGGGC
AAGCCCATCCTGGCCTTGCCATCGAGGACGAATAAAGGCATCGCAAGGAT
CGTGCCCCTGCTTAAGCCGGGAGCGGGCGTTGTTACTCCCAGGGCGTTGG
TGCATTATGTGGTGACGGAATACGGGATTGCGTTTTTGTTTGGGAAGACC
TTGCAGGTATGACAGGAACTTCACTTCCTCCCTCCCGCCCTCCATTCCTA
CGAATCTCCAATTGTTTTGTGTTGCACCTCCCAGCCTTTTCCTTCCCATC
ACATACTCCTTTGCGAACATGAGAAGACCACTCATTTCTCTCTCACTGTC
CCTATGCCTTTCTTCCTCCCTTCCTCCTCCCTCCCTTCCTCCTCCCTCCC
TTCCTTCCTCCAGGAACGAGCCAAGGCCCTGATTGAGATAGCGCACCCCG
ACGACAGAGAATCCCTCGAGAAGGCAGCCCACGCCCGCTTTCGCTGCTAG
TCGGAGGAAGGGAGGGAAGGAGGAAGAGAGGGCAATGATTTTTTTTTTTG
ACATGTGGGAGCGAGGAAATTTGTGTATTTTGTAAAACGTTTGATTATCT
ATCTGGAGGTGTGACATGAGGGAGGAGGGGGGGAAATGATACCCCATACA
AGGAGCGCGGGCAGAACGGATTGAGAAGGAAAATAGCGAGGAGAATTTGG
TGGAAATGAAGAGATCAGAAGAAATGGGGAGATGGCAGGTATACTGCTAC
CAAACGTATGCAGGGAAATCGATGTGGGGTGAGGGCGAGTTACAAAGCGA
CATTTGTGTGCTCATTATTGA
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protein sequence of NO12G01020.2

>NO12G01020.2-protein ID=NO12G01020.2-protein|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MLVVLTNRVRVARLASRAASASAADLPLPRPSMFQAARSIWHTPHLERES
DGGMIREDEPHLKRIGREPVYVKSALEAVTGIESGQRVVIQGAVATPTLL
IDAMTHHGKSAKLKGVQVCHLHTEGSAPYAEKECSDIFHTTCFFVGSNMR
KPVAEGRAEYVPIYLSEIPNLFRRRRLPIDVALVQVSPPDKHGFCSLGTS
VDIMRAGVQCAKHVVGHVNAKMPRTLGDGLVHISQFDRVFEEDVDLPEHA
ASPLSPVETAIGKLIAENLISDGATLQLGIGSIPNAVLSGLTNHRDLGIH
SETFSDGILPLVKAGNITNAKKKENQGRIVTAFCSGTRALYDFIDDNPMV
KFLDVAYVNSSHVISKQPKMTAINSCVEIDLTGQVASDSIGPMIYSGVGG
QVDFLRGASLNPEGKPILALPSRTNKGIARIVPLLKPGAGVVTPRALVHY
VVTEYGIAFLFGKTLQV*
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mRNA from alignment at chr12:321515..325137+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01020.2 ID=NO12G01020.2|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=3623bp|location=Sequence derived from alignment at chr12:321515..325137+ (Nannochloropsis oceanica)
CTTTGACTTGGTATTGCACTCGCCGTCCTGTGCGTTTGCCACATGGTTTC CTCCTTAGGTCCTGGGTCATTTTGAAAATAACTAACGTGAGCGTATAATG GAGACCAGATCAGGAGTCTTGTATACTCTTATGGTTTGGTGTTGGGCTGG CCTTCAGCATTGGATTCCTTGAAGACAATGCAGCCACCAATCGATGCGGC GCGGCATCTTATGTCCATGCAGTGTTTTCCTTGCACGTAACCCACAAGCC CATTGCCGCACGCTTATACCCAATACTACCACACACCACTACAAAGAAAA CAAGCCAAATGCTGGTTGTCCTCACCAACAGGGTGCGGGTTGCGCGTCTC GCGTCCCGCGCCGCCTCAGCTTCCGCTGCCGACCTCCCTCTCCCCCGTCC TTCCATGTTCCAAGCGGCGCGCAGCATTTGGCATACGCCCCACTTAGAGC GCGAGAGTGACGGCGGAATGATCCGCGAGGACGAGCCGCACCTAAAGCGC ATTGGCAGAGAGTAAGTTTGGGTTGGGGTATCGGCTGTAGGCACAAGGTT TTCAGGATTGTTTGGACACCATCCCTTCTTGCCTCGTAGCTGAAGTAAAT TTCTTTACAGCTTTCGACTGACGTATTGAGTGCCATTCTTCGACACCTTC TTTATCGACTGTCCCCTTTCGAGCCCCAGGGAAATGGAATGATAAGGGGA AAGTCGTCGCTCTGTAGTCACGTCCCTCGTTCATTCCTTCTCACACTCGA TGTATACACGACACGGGGGCACGGGAAGTTATGCCAAAATCTCTGAGCTC GTCTGATAAGTCGCCATGTAGGATTTGAAATGTGACCAGATACATGAGTT CTGGGTAGCATCCTTGTTAGTCGTCCAATTTGATCATTGAACTTAACATT CATCTCCACCACCTCATCTCTTTCTCCTACCCCCACAGGGGACCACGAAT TCAGTTTTAAAAATATTCGTTTGTATTCGGACTAAGTCTTCCTCTCCCAA CTCATATAGGCCCGTGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGGCA TTGAATCTGGCCAGCGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCACC CTCCTCATCGACGCTATGACCCACCATGGGAAGAGCGCCAAGTTAAAGGG TGTCCAAGTTTGCCATCTCCACACTGAGGGCTCTGCGCCCTATGCTGAAA AAGAATGCTCGGATATTTTTCACACGACGTGTTTTTTCGTGGGTTCCAAC ATGCGGAAGCCTGTCGCAGAAGGCCGAGCAGAGTATGGTAAGTGCTTCAC CGTGTGTGTTTGCCTTCTTTCGTTATTTCCCGCCCTTTCCCCCCCCACTC TTTCTCTCTCGGTGTTTCTCTATTTATCATCTAGACGTGCTTACTCGTGG CGTTCTAAGCCTCCTTTAATTTTACTAGCCCTCTACTGGACCAGCGAGAT CCCATGTTTCCTCCTTCTCCCACGGTGACAACGAAACCGCTTGTCCGACG ACGTCGCGGTCGTCTAAGGCTCTTCTCTTCACAATCACAGCGTCACACCC TCCCTTGTCCCCCCCGTTTACTTCCCTCCAGTCCCCATCTACCTCAGCGA GATCCCCAATCTTTTCCGTCGAAGGCGTTTGCCCATCGACGTGGCGTTGG TTCAGGTGTCGCCTCCGGACAAGCACGGCTTTTGCTCTCTGGGCACGAGC GTGGATATCATGAGGGCAGGGGTGCAATGCGCAAAGCACGTGGTGGGCCA TGTTAACGCCAAGATGCCTCGGACGTTGGGGGATGGTCTGGTCCACATTT CCCAGTTCGACCGGGTGTTCGAGTAAGGAGTACCCTTGGCCCTTGACATA ACAAGTTTTGGGGGATTTATTTTCATGGCAATCTAATCTCATCCATATCT CTCTCCCTCCCCTCTTCCTTTTTTCCTTCCCTCCCCCCTTTCCTATCCAC GACAGAGAAGACGTGGACCTCCCCGAACACGCCGCCTCCCCCCTCTCCCC CGTGGAAACTGCCATCGGGAAGCTAATCGCCGAGAATTTGATCTCGGATG GGGCGACCCTGCAATTGGGCATCGGCTCAATCCCAAATGCGGTTCTATCG GGCCTGACCAACCATCGTGACTTGGGGATCCATTCAGGTACTTTTGGCCC TTTCAACACATATCTCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCCCT CCTTCCCTCCATTTCTCCCCTGCACAGCCCTTCTCCAGGCCCACGTTTCC GCTGGTTTACCTTCTTTCACCTTCCCTTTTCTCCCCCCTCCTTCGTCTCT TCCCGCGGGCACTAACTCGTGCCCCTCATCCTCCCCCCTCCCTCTCTTCT CCCTGCCCTCCTAAACCCCACAGAAACATTTTCCGACGGGATCCTGCCGC TTGTCAAGGCGGGAAATATCACCAATGCCAAGAAGAAGGAGAATCAAGGC AGAATCGTCACGGCGTTCTGCAGCGGCACCCGGGCCTTGTACGACTTTAT CGATGACAACCCGATGGTGAAGTTCCTGGTAGGTAGTGGCGGCGTATCCC TGTATAAACCGAGTGCCGCTATCAACCTCATGCTCCCTTTTTAACTAAAC GAGAAGAACTGAGGTAAATGCAATTCATATTATTTTATCCCTCCCTCCCT CCCTCCATCCATCCCTCAGGACGTGGCCTACGTGAACAGCTCCCACGTCA TCTCGAAGCAACCCAAAATGACCGCCATCAACTCCTGTGTGGAGATCGAC CTCACGGGCCAGGTAGCAAGTGATAGCATCGGCCCGATGATTTATTCAGG GGTTGGTGGCCAGGTGGATTTCCTGAGAGGGGCCTCGCTCAACCCCGAGG GCAAGCCCATCCTGGCCTTGCCATCGAGGACGAATAAAGGCATCGCAAGG ATCGTGCCCCTGCTTAAGCCGGGAGCGGGCGTTGTTACTCCCAGGGCGTT GGTGCATTATGTGGTGACGGAATACGGGATTGCGTTTTTGTTTGGGAAGA CCTTGCAGGTATGACAGGAACTTCACTTCCTCCCTCCCGCCCTCCATTCC TACGAATCTCCAATTGTTTTGTGTTGCACCTCCCAGCCTTTTCCTTCCCA TCACATACTCCTTTGCGAACATGAGAAGACCACTCATTTCTCTCTCACTG TCCCTATGCCTTTCTTCCTCCCTTCCTCCTCCCTCCCTTCCTCCTCCCTC CCTTCCTTCCTCCAGGAACGAGCCAAGGCCCTGATTGAGATAGCGCACCC CGACGACAGAGAATCCCTCGAGAAGGCAGCCCACGCCCGCTTTCGCTGCT AGTCGGAGGAAGGGAGGGAAGGAGGAAGAGAGGGCAATGATTTTTTTTTT TGACATGTGGGAGCGAGGAAATTTGTGTATTTTGTAAAACGTTTGATTAT CTATCTGGAGGTGTGACATGAGGGAGGAGGGGGGGAAATGATACCCCATA CAAGGAGCGCGGGCAGAACGGATTGAGAAGGAAAATAGCGAGGAGAATTT GGTGGAAATGAAGAGATCAGAAGAAATGGGGAGATGGCAGGTATACTGCT ACCAAACGTATGCAGGGAAATCGATGTGGGGTGAGGGCGAGTTACAAAGC GACATTTGTGTGCTCATTATTGA
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Coding sequence (CDS) from alignment at chr12:321515..325137+

>NO12G01020.2 ID=NO12G01020.2|Name=NO12G01020.2|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr12:321515..325137+ (Nannochloropsis oceanica)
ATGCTGGTTGTCCTCACCAACAGGGTGCGGGTTGCGCGTCTCGCGTCCCG
CGCCGCCTCAGCTTCCGCTGCCGACCTCCCTCTCCCCCGTCCTTCCATGT
TCCAAGCGGCGCGCAGCATTTGGCATACGCCCCACTTAGAGCGCGAGAGT
GACGGCGGAATGATCCGCGAGGACGAGCCGCACCTAAAGCGCATTGGCAG
AGAGCCCGTGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGGCATTGAAT
CTGGCCAGCGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCACCCTCCTC
ATCGACGCTATGACCCACCATGGGAAGAGCGCCAAGTTAAAGGGTGTCCA
AGTTTGCCATCTCCACACTGAGGGCTCTGCGCCCTATGCTGAAAAAGAAT
GCTCGGATATTTTTCACACGACGTGTTTTTTCGTGGGTTCCAACATGCGG
AAGCCTGTCGCAGAAGGCCGAGCAGAGTATGTCCCCATCTACCTCAGCGA
GATCCCCAATCTTTTCCGTCGAAGGCGTTTGCCCATCGACGTGGCGTTGG
TTCAGGTGTCGCCTCCGGACAAGCACGGCTTTTGCTCTCTGGGCACGAGC
GTGGATATCATGAGGGCAGGGGTGCAATGCGCAAAGCACGTGGTGGGCCA
TGTTAACGCCAAGATGCCTCGGACGTTGGGGGATGGTCTGGTCCACATTT
CCCAGTTCGACCGGGTGTTCGAAGAAGACGTGGACCTCCCCGAACACGCC
GCCTCCCCCCTCTCCCCCGTGGAAACTGCCATCGGGAAGCTAATCGCCGA
GAATTTGATCTCGGATGGGGCGACCCTGCAATTGGGCATCGGCTCAATCC
CAAATGCGGTTCTATCGGGCCTGACCAACCATCGTGACTTGGGGATCCAT
TCAGAAACATTTTCCGACGGGATCCTGCCGCTTGTCAAGGCGGGAAATAT
CACCAATGCCAAGAAGAAGGAGAATCAAGGCAGAATCGTCACGGCGTTCT
GCAGCGGCACCCGGGCCTTGTACGACTTTATCGATGACAACCCGATGGTG
AAGTTCCTGGACGTGGCCTACGTGAACAGCTCCCACGTCATCTCGAAGCA
ACCCAAAATGACCGCCATCAACTCCTGTGTGGAGATCGACCTCACGGGCC
AGGTAGCAAGTGATAGCATCGGCCCGATGATTTATTCAGGGGTTGGTGGC
CAGGTGGATTTCCTGAGAGGGGCCTCGCTCAACCCCGAGGGCAAGCCCAT
CCTGGCCTTGCCATCGAGGACGAATAAAGGCATCGCAAGGATCGTGCCCC
TGCTTAAGCCGGGAGCGGGCGTTGTTACTCCCAGGGCGTTGGTGCATTAT
GTGGTGACGGAATACGGGATTGCGTTTTTGTTTGGGAAGACCTTGCAGGT
ATGA
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Synonyms
Publications