NO12G00970.1, NO12G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00970.1
Unique NameNO12G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1295
Alignment locationchr12:309953..311788 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:309953..311788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00970.1 vs.
Match: WP_006983369.1 (alpha/beta hydrolase [Chthoniobacter flavus]; EDY16431.1 alpha/beta hydrolase [Chthoniobacter flavus Ellin428])

HSP 1 Score: 202.6 bits (514), Expect = 2.100e-48
Identity = 121/280 (43.21%), Postives = 153/280 (54.64%), Query Frame = 0 
Query:   75 PVRLWSHGHVPLAKPNLEDAGHAPFLMAYVPQASASVGTSVVIAPGGDYWDVNTKGEGTPYAQWLCAQGVASYVLQYRGDSIGYHAPVPELDAKRAIRVVRNRLRPSIDDIFKVGLIGSSAGGHLAATVLAFNDDGNADAADPIERKSSRPDFGVLVYPIITMEDGATHAVSKTNLFGPGLSAKQTQNLTRHYSIEKHVSKSFPPTFLFHTEDDDVVSVENAFRMDDALRAAGVYRQVDIYESGPHAQGLGEGSVVTDEGELLHGHPWTRRSLDFLSKLG 355
            P+ LW +   P A  + +D    P L A++P    + G ++VI PGG Y  +    EG  YA+WL   G+A  VL+YR  S GY  P    DA RA+R+ R++      D+ +VG++GSSAGGHLA+T+L   D G  D ADPIER SSRPD G+L YP+ITM    TH  SK NL G        Q L    S EKHV+K  PPTFLFHT +D+ V VEN+     AL  AGV   + IY+ G H  GLG G            HPW    L +L   G
Sbjct:   23 PIPLWPNA-APGALGDKDD--DIPTLTAFLPSPDKATGAAIVICPGGGYGGL-APHEGKGYAEWLAENGIAGLVLKYRLGSHGYRHPAMLNDAARAVRLARSKAGEWHIDVKRVGIMGSSAGGHLASTLLTHFDAGKTDDADPIERFSSRPDIGILCYPVITM-GPFTHGGSKKNLLGD----NPPQELVDLLSNEKHVTKDTPPTFLFHTYEDNAVKVENSLMFAKALHDAGVPFDLHIYQKGAHGMGLGGGHAGGPH------HPWVADCLYWLKVQG 287
The following BLAST results are available for this feature:
BLAST of NO12G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_006983369.12.100e-4843.21alpha/beta hydrolase [Chthoniobacter flavus]; EDY1... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00970NO12G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00970.1NO12G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00970.1.cds1NO12G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00970.1.cds2NO12G00970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00970.1.cds3NO12G00970.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00970.1.cds4NO12G00970.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00970.1.cds5NO12G00970.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00970.1.cds6NO12G00970.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00970.1.cds7NO12G00970.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00970.1 ID=NO12G00970.1|Name=NO12G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp
GGAACATGGGCCTACTGCTGTGATCACAGCTGTGATGAAGATGATGATAA
CGATTCGTGCCCTACCCTGACCTCTCAGCATATTCTGCCTAGTTCAAAAC
AGAGATTAACCATGGTGACGGCAGTTGCGGTTGGCGATGTAGAGCGAGGC
GCCCGTCAAGGCCCTTCTCCCGCATCTGAAAGACCCCCACGGTGGAGAAG
GGTCCGCATTTTGGCGGTCGTGGCCAGCGTGGCAGCCGCAGGAGTGACAG
GTCTTCGCCGGTACAACCACGGACGAAACAATGCTGCGAATAACATCTCT
AATCATGGCCTAGATGGCTGCCATGCCCCGTTTCCCGTTCGATTGTGGTC
ACATGGCCACGTCCCTTTGGCAAAACCTAATTTGGAGGACGCCGGGCATG
CCCCTTTCCTCATGGCCTACGTCCCTCAAGCATCCGCATCAGTTGGGACG
TCTGTTGTAATTGCACCCGGGGGGGATTACTGGGACGTGAATACAAAGGG
GGAGGGGACCCCATATGCTCAATGGCTGTGTGCCCAAGGCGTGGCCTCCT
ATGTCCTGCAGTACCGCGGCGATAGTATCGGCTACCACGCCCCCGTGCCA
GAACTCGACGCAAAAAGGGCGATTCGCGTGGTTCGCAATCGTTTGCGGCC
CTCTATCGACGACATCTTCAAGGTTGGACTGATCGGCAGTTCCGCCGGTG
GCCATCTAGCGGCGACTGTGCTTGCTTTCAATGATGACGGCAATGCCGAC
GCCGCAGACCCCATCGAGCGAAAGAGCTCTCGTCCAGATTTTGGAGTCCT
TGTTTATCCCATCATTACCATGGAAGACGGAGCGACACACGCAGTCTCCA
AGACCAACCTTTTTGGCCCTGGTTTGTCCGCAAAACAGACTCAAAATCTG
ACACGCCACTATTCGATTGAAAAACATGTGAGCAAGAGTTTTCCTCCTAC
ATTTCTGTTCCACACGGAGGATGACGATGTTGTCAGTGTGGAGAATGCCT
TTCGTATGGATGATGCGCTCAGGGCTGCTGGGGTTTACCGCCAAGTGGAC
ATCTACGAGAGTGGCCCGCATGCCCAGGGCTTGGGGGAGGGTAGTGTTGT
GACAGATGAGGGGGAGCTTTTGCACGGTCATCCTTGGACGAGGCGGTCCC
TGGATTTTTTAAGCAAGTTGGGAATGCTAGGGAGAAGGTAGCGACAATGA
AGTAGATGGATAGCTGAATGTGATAATAAACCCGAAATGCATGTGCATAA
AAGAGAAATGGTGAAAATTTATCAATTGCGAGATATGGAACCAAG
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protein sequence of NO12G00970.1

>NO12G00970.1-protein ID=NO12G00970.1-protein|Name=NO12G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MVTAVAVGDVERGARQGPSPASERPPRWRRVRILAVVASVAAAGVTGLRR
YNHGRNNAANNISNHGLDGCHAPFPVRLWSHGHVPLAKPNLEDAGHAPFL
MAYVPQASASVGTSVVIAPGGDYWDVNTKGEGTPYAQWLCAQGVASYVLQ
YRGDSIGYHAPVPELDAKRAIRVVRNRLRPSIDDIFKVGLIGSSAGGHLA
ATVLAFNDDGNADAADPIERKSSRPDFGVLVYPIITMEDGATHAVSKTNL
FGPGLSAKQTQNLTRHYSIEKHVSKSFPPTFLFHTEDDDVVSVENAFRMD
DALRAAGVYRQVDIYESGPHAQGLGEGSVVTDEGELLHGHPWTRRSLDFL
SKLGMLGRR*
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mRNA from alignment at chr12:309953..311788+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00970.1 ID=NO12G00970.1|Name=NO12G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp|location=Sequence derived from alignment at chr12:309953..311788+ (Nannochloropsis oceanica)
GGAACATGGGCCTACTGCTGTGATCACAGCTGTGATGAAGATGATGATAA
CGATTCGTGCCCTACCCTGACCTCTCAGCATATTCTGCCTAGTTCAAAAC
AGAGATTAACCATGGTGACGGCAGTTGCGGTTGGCGATGTAGAGCGAGGC
GCCCGTCAAGGGTAAGAAAGAGGTCATGTGCTGGGGAGATCGATGGTAAT
GATGTGACCAAAATGTTCAGGCACACTCATCGTGCTCAATTCTCTCGACT
CACTTATGGCACACATTCCCGCGGCTATTTAATCGACAGCCCTTCTCCCG
CATCTGAAAGACCCCCACGGTGGAGAAGGGTCCGCATTTTGGCGGTCGTG
GCCAGCGTGGCAGCCGCAGGAGTGACAGGTCTTCGCCGGTACAACCACGG
ACGAAACAATGCTGCGAATAACATCTCTAATCATGGCCTAGATGGCTGCC
ATGCCCCGTTTCCCGTTCGATTGTGGTCACATGGCCACGTCCCTTTGGCA
AAACCTAATTTGGAGGACGCCGGGCATGCCCCTTTCCTCATGGCCTACGT
CCCTCAAGGTAAGCACCATACCTACTTATAGATCCCTAACCCTAAAAAAA
CAAAAAAAGGCCACAGCGTATTTTTTTTCTATATGCAGCATCCGCATCAG
TTGGGACGTCTGTTGTAATTGCACCCGGGGGGGATTACTGGGACGTGAAT
ACAAAGGGGGAGGGGACCCCATATGCTCAATGGCTGTGTGCCCAAGGCGT
GGCCTCCTATGTCCTGCAGTACCGCGGCGATAGTATCGGGTAAGTCCTCT
TCTATTTTATGTATGTGTGCCCGTCCTCACGTTTATCCTCCTCTTTCTTC
GCATGTCTAGCTACCACGCCCCCGTGCCAGAACTCGACGCAAAAAGGGCG
ATTCGCGTGGTTCGCAATCGTTTGCGGCCCTCTATCGACGACATCTTCAA
GGTAGGAGACCGCTTTGACCTAACGGATGCGGCATATACATTCACCATGT
CCTCTCCCTCTTTACCTTCAGGTTGGACTGATCGGCAGTTCCGCCGGTGG
CCATCTAGCGGCGACTGTGCTTGCTTTCAATGATGACGGCAATGCCGACG
CCGCAGACCCCATCGAGCGAAAGAGGTATTTCAAAAACCAATGATCGTCA
TCCAAATATTGCCATACATTTCTGTTTTACGCTTTACGATGCACATATGT
CATATATAGCTCTCGTCCAGATTTTGGAGTCCTTGTTTATCCCATCATTA
CCATGGAAGACGGAGCGACACACGCAGTCTCCAAGACCAACCTTTTTGGC
CCTGGTTTGTCCGCAAAACAGACTCAAAATCTGACACGCCACTATTCGAT
TGAAAAACATGTGAGCAAGAGTTTTCCTCCTACATTTCTGTTCCACACGG
AGGATGACGATGTTGTCAGTGTGGAGAATGCCTTTCGTATGGATGATGCG
CTCAGGGCTGCTGGGGTATGTATGTAGAGGGGAGGGAAATGCCCGATTTA
TCTTTTGCCCTTTTGAGTATTCTCGTGGACATAAATATTAATTTCCCTTC
ATGTTTCCTCTCTTTTTTGATAGGTTTACCGCCAAGTGGACATCTACGAG
AGTGGCCCGCATGCCCAGGGCTTGGGGGAGGGTAGTGTTGTGACAGATGA
GGGGGAGCTTTTGCACGGTCATCCTTGGACGAGGCGGTCCCTGGATTTTT
TAAGCAAGTTGGGAATGCTAGGGAGAAGGTAGCGACAATGAAGTAGATGG
ATAGCTGAATGTGATAATAAACCCGAAATGCATGTGCATAAAAGAGAAAT
GGTGAAAATTTATCAATTGCGAGATATGGAACCAAG
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Coding sequence (CDS) from alignment at chr12:309953..311788+

>NO12G00970.1 ID=NO12G00970.1|Name=NO12G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr12:309953..311788+ (Nannochloropsis oceanica)
ATGGTGACGGCAGTTGCGGTTGGCGATGTAGAGCGAGGCGCCCGTCAAGG
CCCTTCTCCCGCATCTGAAAGACCCCCACGGTGGAGAAGGGTCCGCATTT
TGGCGGTCGTGGCCAGCGTGGCAGCCGCAGGAGTGACAGGTCTTCGCCGG
TACAACCACGGACGAAACAATGCTGCGAATAACATCTCTAATCATGGCCT
AGATGGCTGCCATGCCCCGTTTCCCGTTCGATTGTGGTCACATGGCCACG
TCCCTTTGGCAAAACCTAATTTGGAGGACGCCGGGCATGCCCCTTTCCTC
ATGGCCTACGTCCCTCAAGCATCCGCATCAGTTGGGACGTCTGTTGTAAT
TGCACCCGGGGGGGATTACTGGGACGTGAATACAAAGGGGGAGGGGACCC
CATATGCTCAATGGCTGTGTGCCCAAGGCGTGGCCTCCTATGTCCTGCAG
TACCGCGGCGATAGTATCGGCTACCACGCCCCCGTGCCAGAACTCGACGC
AAAAAGGGCGATTCGCGTGGTTCGCAATCGTTTGCGGCCCTCTATCGACG
ACATCTTCAAGGTTGGACTGATCGGCAGTTCCGCCGGTGGCCATCTAGCG
GCGACTGTGCTTGCTTTCAATGATGACGGCAATGCCGACGCCGCAGACCC
CATCGAGCGAAAGAGCTCTCGTCCAGATTTTGGAGTCCTTGTTTATCCCA
TCATTACCATGGAAGACGGAGCGACACACGCAGTCTCCAAGACCAACCTT
TTTGGCCCTGGTTTGTCCGCAAAACAGACTCAAAATCTGACACGCCACTA
TTCGATTGAAAAACATGTGAGCAAGAGTTTTCCTCCTACATTTCTGTTCC
ACACGGAGGATGACGATGTTGTCAGTGTGGAGAATGCCTTTCGTATGGAT
GATGCGCTCAGGGCTGCTGGGGTTTACCGCCAAGTGGACATCTACGAGAG
TGGCCCGCATGCCCAGGGCTTGGGGGAGGGTAGTGTTGTGACAGATGAGG
GGGAGCTTTTGCACGGTCATCCTTGGACGAGGCGGTCCCTGGATTTTTTA
AGCAAGTTGGGAATGCTAGGGAGAAGGTAG
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Synonyms
Publications