NO12G00960.1, NO12G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00960.1
Unique NameNO12G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1665
Alignment locationchr12:306568..308324 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:306568..308324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G00960.1 vs.
Match: XP_002180939.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC47591.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 422.5 bits (1085), Expect = 2.000e-114
Identity = 228/505 (45.15%), Postives = 307/505 (60.79%), Query Frame = 0 
Query:   55 VYWAVTVVLI-VWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDTRRCIFQNVVVQRGVIYYYAEDPL--VATVPPMLCSMVNMPEIYAAPCDVRVISDPTAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYNASHITSNDPVPAILHTLKQQDV---GIFLTDHH-AGTLMDRIFWKEFYPEVTVLPLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHRYGIVEEGDDTAAPASAPAAAAAAPAPAAAPAVFTPTPPRRVGPPRVTLIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARFKEHLKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSAPLCWE 553
            ++WA+   L  +WY     R    L     + S F CQG S DTRRC+F NVVVQ GV +  A DP    A  P +LCS  N PE +  PCDVR  +D  A  T+L  T ++  F  G+AL+RLNPGNAYH+LFEDMIP +A + + +  T+    P      + Q     G+F+TD       M+  FW E  PEVTV+  +  V YHV TL+ G+   C HW  C+ TNR  G+FDPP+AA   R +VFHRYGI EE                AP   + P         R  PPR+TL++R+TTRRIRNL+EV+  +++  G    +VDM++L +++Q+ L+H+TDI++LVHGGA+AN LWLPPRALIIDIYPHGF+IS  S+++H IRKALEP   +GH+PFQ+E   GQE+L GP+ PGCVC +  CQ HVF TSA I++D  RF+ H++E    W+ A     +Y +P++P+EF       + RR AA     AP+CW+
Sbjct:   18 LFWAMVGALFPMWY---LVRSGVDLRPEYPSRSHFQCQGDSRDTRRCVFHNVVVQDGVFWLEAPDPRDPSAAPPSLLCSTTNGPEKHTKPCDVRFAADAFAWRTLLDATTESRRFATGVALYRLNPGNAYHVLFEDMIPIVANLLDRTGGTAVSYSPGHADVKQHQPRAPWGLFVTDRKITAKAMEDKFWNELLPEVTVVHPTTEV-YHVDTLLAGSGVPCSHWGLCRPTNRPVGLFDPPDAAITFRHLVFHRYGIQEE----------------APNAMSLP---------RQNPPRITLVQRTTTRRIRNLQEVQDAVKAGTGTVARLVDMAELSLREQISLSHDTDIYVLVHGGALANTLWLPPRALIIDIYPHGFMISGRSALLHSIRKALEPAFAVGHLPFQVENTPGQEILEGPLAPGCVCSAFECQSHVFHTSAWIHIDPDRFQTHMQEALHIWREA-----NYTRPISPEEFRLQNNAEQARRDAAAAAIGAPVCWK 488
The following BLAST results are available for this feature:
BLAST of NO12G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002180939.12.000e-11445.15predicted protein [Phaeodactylum tricornutum CCAP ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00960NO12G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00960.1NO12G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00960.1.cds1NO12G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00960.1.cds2NO12G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00960.1 ID=NO12G00960.1|Name=NO12G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
ATGTGCTCACCGTTCTCGTCCTCGACTCTACCACCGTTGTACCGTCTTGA
CAGGATGGATCAAGACGAGCTCGTGGAGGTCGTGCCAGGATGGCCCCCTC
CTCAAACAAAACGCTGGACCTCTCTTATGACAAAATTTGTCCCGAAATGC
TGCCGAGGGAGGGTTTATTGGGCAGTGACGGTCGTGCTGATTGTGTGGTA
TTCGCTGCGATTTACACGTAAGCCACCATTATTGGCCATGAGTCGTTCCA
ATCCATCCACCTTTGCTTGCCAGGGATACTCTTTGGACACACGGCGGTGT
ATTTTCCAGAATGTCGTCGTGCAAAGAGGCGTAATCTACTACTACGCAGA
GGACCCGCTTGTCGCGACGGTGCCTCCTATGCTCTGCTCAATGGTCAATA
TGCCTGAGATATATGCGGCCCCCTGCGATGTCCGCGTCATCTCCGACCCC
ACAGCCATTGCCACCATCCTCGCCCAAACAAACAAGACAGAGAATTTTAA
TCTAGGCCTCGCCTTGCATCGCCTAAACCCGGGCAATGCCTACCATTTGC
TGTTTGAAGACATGATACCTGCCATGGCCATGATTTACAATGCAAGCCAC
ATCACCAGCAATGACCCAGTTCCCGCCATTCTCCACACGCTTAAGCAGCA
AGACGTGGGTATCTTCCTCACCGACCATCACGCTGGCACGCTCATGGACA
GGATTTTTTGGAAAGAGTTTTACCCAGAGGTGACCGTGCTGCCCTTGTCG
AATAATGTGTCCTACCACGTCAAGACCCTTGTGGTTGGTACAAGAACGAA
TTGCGTTCATTGGAACCACTGCAAAGTCACGAACCGCACCCGTGGTATTT
TCGACCCACCCGAAGCTGCCGCGGCTCTAAGAAAAGTCGTCTTTCATCGG
TACGGCATCGTTGAAGAAGGAGACGACACTGCTGCTCCTGCTTCTGCTCC
TGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTGCTGCTCCTGCTGTTTTTA
CCCCTACTCCTCCTCGGCGAGTAGGTCCACCAAGAGTCACGCTCATCCGA
CGCTCTACCACTCGGCGCATCCGAAATTTAGAAGAAGTACGGAGCACGAT
TGAGAGCGTAATGGGTGTTTCCCCCCACGTTGTGGACATGTCAGATCTCG
GCATCAAAGATCAGGTCTTGCTCGCGCACAACACTGATATTTTCATCCTC
GTCCATGGCGGAGCTATGGCAAATCTCCTTTGGCTTCCGCCTCGCGCGTT
AATCATCGATATCTACCCACATGGTTTCCTTATTTCCTACCATAGTAGCA
TCATACATTGGATTCGAAAGGCCCTCGAGCCGGTCATCGAATTGGGACAT
ATGCCTTTTCAAATAGAGACGGCGGAGGGACAGGAGCTCTTGACGGGACC
AATGGTACCCGGATGTGTGTGTCGCTCCATTCCTTGTCAGATACACGTGT
TTGGGACCTCGGCGCTTATTAATGTGGATGTGGCGAGGTTCAAGGAGCAT
TTGAAGGAGGGGTTCAGGGCGTGGAAGGGAGCACAGAGGGAAAGAGGGAG
TTATGAGAAGCCGGTGACACCCGATGAGTTCGAGAGGAGTCAGGAAGAGA
TAGAAAGGAGGAGAGCGGCGGCGCCTGGTTATAGTTCGGCGCCGTTGTGC
TGGGAGGGGCCTTAG
back to top

protein sequence of NO12G00960.1

>NO12G00960.1-protein ID=NO12G00960.1-protein|Name=NO12G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MCSPFSSSTLPPLYRLDRMDQDELVEVVPGWPPPQTKRWTSLMTKFVPKC
CRGRVYWAVTVVLIVWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDTRRC
IFQNVVVQRGVIYYYAEDPLVATVPPMLCSMVNMPEIYAAPCDVRVISDP
TAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYNASH
ITSNDPVPAILHTLKQQDVGIFLTDHHAGTLMDRIFWKEFYPEVTVLPLS
NNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHR
YGIVEEGDDTAAPASAPAAAAAAPAPAAAPAVFTPTPPRRVGPPRVTLIR
RSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFIL
VHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGH
MPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARFKEH
LKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSAPLC
WEGP*
back to top

mRNA from alignment at chr12:306568..308324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00960.1 ID=NO12G00960.1|Name=NO12G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp|location=Sequence derived from alignment at chr12:306568..308324- (Nannochloropsis oceanica)
ATGTGCTCACCGTTCTCGTCCTCGACTCTACCACCGTTGTACCGTCTTGA
CAGGATGGATCAAGACGAGCTCGTGGAGGTCGTGCCAGGTGAGTACTTGC
GTGTCACAGGAGACGCAACATCCACATCGCAATGGATTATTGGTTGAGAT
TCTTCTTCCCTTCACGCACACACTGGACAGGATGGCCCCCTCCTCAAACA
AAACGCTGGACCTCTCTTATGACAAAATTTGTCCCGAAATGCTGCCGAGG
GAGGGTTTATTGGGCAGTGACGGTCGTGCTGATTGTGTGGTATTCGCTGC
GATTTACACGTAAGCCACCATTATTGGCCATGAGTCGTTCCAATCCATCC
ACCTTTGCTTGCCAGGGATACTCTTTGGACACACGGCGGTGTATTTTCCA
GAATGTCGTCGTGCAAAGAGGCGTAATCTACTACTACGCAGAGGACCCGC
TTGTCGCGACGGTGCCTCCTATGCTCTGCTCAATGGTCAATATGCCTGAG
ATATATGCGGCCCCCTGCGATGTCCGCGTCATCTCCGACCCCACAGCCAT
TGCCACCATCCTCGCCCAAACAAACAAGACAGAGAATTTTAATCTAGGCC
TCGCCTTGCATCGCCTAAACCCGGGCAATGCCTACCATTTGCTGTTTGAA
GACATGATACCTGCCATGGCCATGATTTACAATGCAAGCCACATCACCAG
CAATGACCCAGTTCCCGCCATTCTCCACACGCTTAAGCAGCAAGACGTGG
GTATCTTCCTCACCGACCATCACGCTGGCACGCTCATGGACAGGATTTTT
TGGAAAGAGTTTTACCCAGAGGTGACCGTGCTGCCCTTGTCGAATAATGT
GTCCTACCACGTCAAGACCCTTGTGGTTGGTACAAGAACGAATTGCGTTC
ATTGGAACCACTGCAAAGTCACGAACCGCACCCGTGGTATTTTCGACCCA
CCCGAAGCTGCCGCGGCTCTAAGAAAAGTCGTCTTTCATCGGTACGGCAT
CGTTGAAGAAGGAGACGACACTGCTGCTCCTGCTTCTGCTCCTGCTGCTG
CTGCTGCTGCTCCTGCTCCTGCTGCTGCTCCTGCTGTTTTTACCCCTACT
CCTCCTCGGCGAGTAGGTCCACCAAGAGTCACGCTCATCCGACGCTCTAC
CACTCGGCGCATCCGAAATTTAGAAGAAGTACGGAGCACGATTGAGAGCG
TAATGGGTGTTTCCCCCCACGTTGTGGACATGTCAGATCTCGGCATCAAA
GATCAGGTCTTGCTCGCGCACAACACTGATATTTTCATCCTCGTCCATGG
CGGAGCTATGGCAAATCTCCTTTGGCTTCCGCCTCGCGCGTTAATCATCG
ATATCTACCCACATGGTTTCCTTATTTCCTACCATAGTAGCATCATACAT
TGGATTCGAAAGGCCCTCGAGCCGGTCATCGAATTGGGACATATGCCTTT
TCAAATAGAGACGGCGGAGGGACAGGAGCTCTTGACGGGACCAATGGTAC
CCGGATGTGTGTGTCGCTCCATTCCTTGTCAGATACACGTGTTTGGGACC
TCGGCGCTTATTAATGTGGATGTGGCGAGGTTCAAGGAGCATTTGAAGGA
GGGGTTCAGGGCGTGGAAGGGAGCACAGAGGGAAAGAGGGAGTTATGAGA
AGCCGGTGACACCCGATGAGTTCGAGAGGAGTCAGGAAGAGATAGAAAGG
AGGAGAGCGGCGGCGCCTGGTTATAGTTCGGCGCCGTTGTGCTGGGAGGG
GCCTTAG
back to top

Coding sequence (CDS) from alignment at chr12:306568..308324-

>NO12G00960.1 ID=NO12G00960.1|Name=NO12G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr12:306568..308324- (Nannochloropsis oceanica)
ATGTGCTCACCGTTCTCGTCCTCGACTCTACCACCGTTGTACCGTCTTGA
CAGGATGGATCAAGACGAGCTCGTGGAGGTCGTGCCAGGATGGCCCCCTC
CTCAAACAAAACGCTGGACCTCTCTTATGACAAAATTTGTCCCGAAATGC
TGCCGAGGGAGGGTTTATTGGGCAGTGACGGTCGTGCTGATTGTGTGGTA
TTCGCTGCGATTTACACGTAAGCCACCATTATTGGCCATGAGTCGTTCCA
ATCCATCCACCTTTGCTTGCCAGGGATACTCTTTGGACACACGGCGGTGT
ATTTTCCAGAATGTCGTCGTGCAAAGAGGCGTAATCTACTACTACGCAGA
GGACCCGCTTGTCGCGACGGTGCCTCCTATGCTCTGCTCAATGGTCAATA
TGCCTGAGATATATGCGGCCCCCTGCGATGTCCGCGTCATCTCCGACCCC
ACAGCCATTGCCACCATCCTCGCCCAAACAAACAAGACAGAGAATTTTAA
TCTAGGCCTCGCCTTGCATCGCCTAAACCCGGGCAATGCCTACCATTTGC
TGTTTGAAGACATGATACCTGCCATGGCCATGATTTACAATGCAAGCCAC
ATCACCAGCAATGACCCAGTTCCCGCCATTCTCCACACGCTTAAGCAGCA
AGACGTGGGTATCTTCCTCACCGACCATCACGCTGGCACGCTCATGGACA
GGATTTTTTGGAAAGAGTTTTACCCAGAGGTGACCGTGCTGCCCTTGTCG
AATAATGTGTCCTACCACGTCAAGACCCTTGTGGTTGGTACAAGAACGAA
TTGCGTTCATTGGAACCACTGCAAAGTCACGAACCGCACCCGTGGTATTT
TCGACCCACCCGAAGCTGCCGCGGCTCTAAGAAAAGTCGTCTTTCATCGG
TACGGCATCGTTGAAGAAGGAGACGACACTGCTGCTCCTGCTTCTGCTCC
TGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTGCTGCTCCTGCTGTTTTTA
CCCCTACTCCTCCTCGGCGAGTAGGTCCACCAAGAGTCACGCTCATCCGA
CGCTCTACCACTCGGCGCATCCGAAATTTAGAAGAAGTACGGAGCACGAT
TGAGAGCGTAATGGGTGTTTCCCCCCACGTTGTGGACATGTCAGATCTCG
GCATCAAAGATCAGGTCTTGCTCGCGCACAACACTGATATTTTCATCCTC
GTCCATGGCGGAGCTATGGCAAATCTCCTTTGGCTTCCGCCTCGCGCGTT
AATCATCGATATCTACCCACATGGTTTCCTTATTTCCTACCATAGTAGCA
TCATACATTGGATTCGAAAGGCCCTCGAGCCGGTCATCGAATTGGGACAT
ATGCCTTTTCAAATAGAGACGGCGGAGGGACAGGAGCTCTTGACGGGACC
AATGGTACCCGGATGTGTGTGTCGCTCCATTCCTTGTCAGATACACGTGT
TTGGGACCTCGGCGCTTATTAATGTGGATGTGGCGAGGTTCAAGGAGCAT
TTGAAGGAGGGGTTCAGGGCGTGGAAGGGAGCACAGAGGGAAAGAGGGAG
TTATGAGAAGCCGGTGACACCCGATGAGTTCGAGAGGAGTCAGGAAGAGA
TAGAAAGGAGGAGAGCGGCGGCGCCTGGTTATAGTTCGGCGCCGTTGTGC
TGGGAGGGGCCTTAG
back to top
Synonyms
Publications