NO12G00940.2, NO12G00940.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00940.2
Unique NameNO12G00940.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2690
Alignment locationchr12:301447..304542 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:301447..304542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G00940.2 vs.
Match: EWM25925.1 (hypothetical protein Naga_100134g12 [Nannochloropsis gaditana])

HSP 1 Score: 271.9 bits (694), Expect = 4.300e-69
Identity = 141/258 (54.65%), Postives = 174/258 (67.44%), Query Frame = 0 
Query:   47 LLLGTIILMVRSETGSMRPSVIYSALSAKLRQTAQPPAPPFLLTDDANFRQDDIRFTWVPREEHQELNAVKEVDAE---AAHGQQVAVYDLIVEGYDMQMFKDQAAAHACLRNKSIVFVGDSLTRYQYLNLVNFIENGQWGGPDPQLENELQWGGWPLFYEGTNARFNGREICDCYRKDPAFRRGNIENRYYYNEEANVWVSFFQWFREETGHLGHDFDWLNVSLPPPRSRRAPSCRGKPNNVRMEKKTEDKYQHQQQ 302
            +L+   IL   SETG  R S  Y  +  K++    P AP FLLTD  +F  +++ + W   E  +E+ A  E +        G  VA   L+V+GYDMQ F+D+ AA +CLRNKSIV VGDSLTRYQYLNLVNF+ENG WGGPDPQLENE QW GW  FY+GTNARFNGREICDCYR++PA RRGNIENRYY+NE  +VWV+FFQWF    GH GH+  WLNVS+PPPR  RAP   G+  +V   +    + +H Q+
Sbjct:   36 VLVIAFILAAFSETGRTRASRWYGTIIFKIKPPMVPVAP-FLLTDRKSFESEELHYLWKV-ENQREIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQE 291
The following BLAST results are available for this feature:
BLAST of NO12G00940.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25925.14.300e-6954.65hypothetical protein Naga_100134g12 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00940NO12G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00940.2NO12G00940.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00940.2.cds1NO12G00940.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00940.2.cds2NO12G00940.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00940.2.cds3NO12G00940.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00940.2 ID=NO12G00940.2|Name=NO12G00940.2|organism=Nannochloropsis oceanica|type=mRNA|length=2690bp
CTGCTACCCTTTTGGGTGTGGGTTTCGAAATGCGGATAGTAAGGGCACGT
CAAGATTACCCGATTTCCCTATCTTCTATTTTAAGGGCAGAAACCGGGGG
CGTACTTGCCGTTAATCCACCGTCATACCATGTAGCCACGTTCATACGGT
CATACGGTCGCCATGGTTGGAATGCCCAAACTGCGAAAATAGAAACCACT
TTTTTCACGCATTTTTCACGTGCTTGTACGGCCACTCGCCAACACCGACG
AAATTGTGCTCGGTTTTGTAGCAAGACAATCCTCAGTTTATGCTTGAGCG
AAAAGCGTATGGCACCATGCTTCTTCCACCCTCACACGCATCACGTTTTC
TTGCCCACATGTGTGGGCACACATACCGCACACACAGTCAGGCTTATTCT
GGTTGATTATGGAAGCAAGCGAGACAGGGGGAAACATGGGAGTCCCGAGT
CCCCAGATGGGTATTACGGTGGATGCCCACCATGTGACTGCTTCGGAGTC
ACCTAGACACTTGAGACGTTCAGTTTTTGTGGCGGCAGGCGCGGGGCTCC
TCCTGGGCACAATAATCCTTATGGTTCGGTCAGAGACTGGCAGCATGCGA
CCCTCCGTCATATACAGTGCCTTAAGTGCAAAGTTGCGACAGACCGCCCA
ACCACCGGCGCCACCATTTCTACTAACCGACGACGCAAATTTTCGGCAGG
ATGACATACGTTTTACGTGGGTGCCTCGGGAGGAGCACCAGGAACTGAAT
GCGGTGAAGGAGGTTGATGCAGAGGCGGCACATGGGCAACAGGTGGCTGT
TTACGACCTGATCGTGGAGGGATATGACATGCAGATGTTTAAAGATCAGG
CGGCGGCGCATGCCTGCTTGAGGAATAAAAGTATTGTCTTTGTGGGCGAC
AGTCTGACGAGATACCAATACCTCAACTTGGTAAATTTCATTGAAAACGG
GCAATGGGGTGGCCCAGATCCGCAGCTCGAGAACGAGCTCCAGTGGGGAG
GATGGCCGCTTTTTTATGAGGGCACTAATGCCCGCTTTAATGGTCGAGAA
ATCTGCGACTGCTACCGAAAAGATCCCGCATTTCGGCGGGGGAACATCGA
GAATCGGTATTATTACAATGAGGAGGCAAACGTGTGGGTGTCCTTCTTTC
AGTGGTTTCGAGAAGAGACGGGCCATCTGGGGCATGACTTTGACTGGTTG
AACGTGTCCTTGCCACCGCCGCGCAGTAGGCGGGCACCCAGTTGTCGAGG
AAAGCCGAACAATGTGAGGATGGAAAAGAAGACGGAGGACAAATATCAGC
ACCAGCAACAGCACCACCACCACCACCACCAGCAGCAAGAACAACAGCAG
CAACAGCAACAACAGCAGCAACAACAGCAGCAACAGCATCAGTATCAACA
ACAGCAACAGCGACAAGGAAAGCCAGCACTGCGAACCAAGCCCTCGCCCG
CACCACCGCTCAACTCTCCTCCTCTTGCTGCTGCCCCCTCTCTTCCTCCT
CGCGCACTTGACAATAAAACGGAAGGATACACGTCATTAGATGAAGCAGC
AGCAGCAGCAGCAACAACATCAACAACAACAACAACAACAACAACAGCAG
CAGCAGCAGCAGCAGTAGCAGAAGGAGAGAGTGGACACTCGCGCCAACTT
CTCTCAGAACAGGCGGCGGCTTGCCTCCCCGGGGCGCACAAGCAACCGCC
CCTACCACAAGCATCAGTGCCTGCACCACTAGTACGACGACCACCACCAC
CACCACCAGCGGCAAGGGAAGCAAATGTAAAAGCACAACAAGAGCAACAC
CACCAGCGCCGAAGCTCTGCCCGCCAGCTCCTCCAAGAACAAGCAGGTTG
TCTCCCCGGGGCGTGTAATGTCCTTCCCGACTGGGAATATGATGTATACG
ACTTCTTCACCCACATCGTCCCCAAGCTCCACCCAGATATTTTGATCGTT
AACAGCGGGCATTGGGCTCGCCTGCCGGGAGAATATGACATGCCCCGCTT
GAGTGAAGTGGTTCGGGAAGCAGTGCGAGCGTCGGGAGGTAGAGCTATTT
GGAAAACGACCACCGCACGTAGGTAAGTAGGAAGAGAGAAGGGAAGAGAT
GAGAGTTTTGAATTATGTGATGCATCTATTTTTCTATCTCATCATTTCAC
TTTATTTATGATCAATACCATCCCTCCCCTTCACCTGTACACCCCACCCC
AACCTCAGGGAGCCCGCTGCCTTCCTTCCTGAAGACGATCTCAAGGAATA
TTTTCATGGCGAAGGCTTCAGCATCCTCGATGCTGGCGCTATCACATATG
CGGCTCGCGGCATTGAAACACACTTAAATGAGACTCAAAACACGCACCTG
TATTGGGACACATTGCACTTTTACGCTCCGATCTACGCGGGTTTGAATAA
CGTCTTGCTCAATTACATTTGTCCGGTGTAGTGCGGGGGACACACATGCG
TGCGTCAATGTAGCACAGAGGGGAAAAGATCGTAGGATGGATAAGAAGGT
TGAGGGCTGGCGTCAAAGTTGGACACATGATAACGAAGAAGTTTCCCCTG
CAGCTGCAAAAGGGAGCTGTGGAAGTGAATAAGGGGGCGAGCGAATCCAC
CCTTGACCAGAGGTTTTGTACAGACTTACAATTGAGGTTTATGAGAAGTC
GTAAATTACATATCATCAATGAAAGGCATAAACGGACTGT
back to top

protein sequence of NO12G00940.2

>NO12G00940.2-protein ID=NO12G00940.2-protein|Name=NO12G00940.2|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MEASETGGNMGVPSPQMGITVDAHHVTASESPRHLRRSVFVAAGAGLLLG
TIILMVRSETGSMRPSVIYSALSAKLRQTAQPPAPPFLLTDDANFRQDDI
RFTWVPREEHQELNAVKEVDAEAAHGQQVAVYDLIVEGYDMQMFKDQAAA
HACLRNKSIVFVGDSLTRYQYLNLVNFIENGQWGGPDPQLENELQWGGWP
LFYEGTNARFNGREICDCYRKDPAFRRGNIENRYYYNEEANVWVSFFQWF
REETGHLGHDFDWLNVSLPPPRSRRAPSCRGKPNNVRMEKKTEDKYQHQQ
QHHHHHHQQQEQQQQQQQQQQQQQQQHQYQQQQQRQGKPALRTKPSPAPP
LNSPPLAAAPSLPPRALDNKTEGYTSLDEAAAAAATTSTTTTTTTTAAAA
AAVAEGESGHSRQLLSEQAAACLPGAHKQPPLPQASVPAPLVRRPPPPPP
AAREANVKAQQEQHHQRRSSARQLLQEQAGCLPGACNVLPDWEYDVYDFF
THIVPKLHPDILIVNSGHWARLPGEYDMPRLSEVVREAVRASGGRAIWKT
TTARR*
back to top

mRNA from alignment at chr12:301447..304542+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00940.2 ID=NO12G00940.2|Name=NO12G00940.2|organism=Nannochloropsis oceanica|type=mRNA|length=3096bp|location=Sequence derived from alignment at chr12:301447..304542+ (Nannochloropsis oceanica)
CTGCTACCCTTTTGGGTGTGGGTTTCGAAATGCGGATAGTAAGGGCACGT
CAAGATTACCCGATTTCCCTATCTTCTATTTTAAGGGCAGAAACCGGGGG
CGTACTTGCCGTTAATCCACCGTCATACCATGTAGCCACGTTCATACGGT
CATACGGTCGCCATGGTTGGAATGCCCAAACTGCGAAAATAGAAACCACT
TTTTTCACGCATTTTTCACGTGCTTGTACGGCCACTCGCCAACACCGACG
AAATTGTGCTCGGTTTTGTAGCAAGACAATCCTCAGTTTATGCTTGAGCG
AAAAGCGTATGGCACCATGCTTCTTCCACCCTCACACGCATCACGTTTTC
TTGCCCACATGTGTGGGCACACATACCGCACACACAGTCAGGCTTATTCT
GGTTGATTATGGAAGCAAGCGAGACAGGGGGAAACATGGGAGTCCCGAGT
CCCCAGATGGGTATTACGGTGGATGCCCACCATGTGACTGCTTCGGAGTC
ACCTAGACACTTGAGACGTTCAGTTTTTGTGGCGGCAGGCGCGGGGCTCC
TCCTGGGCACAATAATCCTTATGGTTCGGTCAGAGACTGGCAGCATGCGA
CCCTCCGTCATATACAGTGCCTTAAGTGCAAAGTTGCGACAGACCGCCCA
ACCACCGGCGCCACCATTTCTACTAACCGACGACGCAAATTTTCGGCAGG
ATGACATACGTTTTACGTGGGTGCCTCGGGAGGAGCACCAGGAACTGAAT
GCGGTGAAGGAGGTTGATGCAGAGGCGGCACATGGGCAACAGGTGGCTGT
TTACGACCTGATCGTGGAGGGATATGACATGCAGATGTTTAAAGATCAGG
CGGCGGCGCATGCCTGCTTGAGGAATAAAAGTATTGTCTTTGTGGGCGAC
AGTCTGACGAGGTAAGTGCATGCACAGAAGTAGGAAGGGTGGGAGAATTC
TATGCGCATTGACGTGGAGATTGGTTGCAGGTTCATAGCTCGATTCCTTG
TGTAATCGTGTGAAATGTTTGGCACGTACTGTTGCCACCATACGCACAAA
GCCTCCATTTCCTACCTCCTTTTCGTTCTCGGCCTGTCTCCCACCGAACC
ATCCTCTCGGCCACGCCCACGCCTCTCTCCCGGCTATCACAGATACCAAT
ACCTCAACTTGGTAAATTTCATTGAAAACGGGCAATGGGGTGGCCCAGAT
CCGCAGCTCGAGAACGAGCTCCAGTGGGGAGGATGGCCGCTTTTTTATGA
GGTACGTCTTGGCAGTCGAGGGAGGGAATAATAGATTATCCGGAGAATGG
CAACTCTTCCTTCCCAACCCAAGGATATAGGAAAAATTGACTGTCATAAC
ACGCAAATGGGTGTTTGCCATTCTTACCACCATCATCTCCTGCCGTCTCC
CCTCTTTTTCTCCCCCCGTCCCTCAGGGCACTAATGCCCGCTTTAATGGT
CGAGAAATCTGCGACTGCTACCGAAAAGATCCCGCATTTCGGCGGGGGAA
CATCGAGAATCGGTATTATTACAATGAGGAGGCAAACGTGTGGGTGTCCT
TCTTTCAGTGGTTTCGAGAAGAGACGGGCCATCTGGGGCATGACTTTGAC
TGGTTGAACGTGTCCTTGCCACCGCCGCGCAGTAGGCGGGCACCCAGTTG
TCGAGGAAAGCCGAACAATGTGAGGATGGAAAAGAAGACGGAGGACAAAT
ATCAGCACCAGCAACAGCACCACCACCACCACCACCAGCAGCAAGAACAA
CAGCAGCAACAGCAACAACAGCAGCAACAACAGCAGCAACAGCATCAGTA
TCAACAACAGCAACAGCGACAAGGAAAGCCAGCACTGCGAACCAAGCCCT
CGCCCGCACCACCGCTCAACTCTCCTCCTCTTGCTGCTGCCCCCTCTCTT
CCTCCTCGCGCACTTGACAATAAAACGGAAGGATACACGTCATTAGATGA
AGCAGCAGCAGCAGCAGCAACAACATCAACAACAACAACAACAACAACAA
CAGCAGCAGCAGCAGCAGCAGTAGCAGAAGGAGAGAGTGGACACTCGCGC
CAACTTCTCTCAGAACAGGCGGCGGCTTGCCTCCCCGGGGCGCACAAGCA
ACCGCCCCTACCACAAGCATCAGTGCCTGCACCACTAGTACGACGACCAC
CACCACCACCACCAGCGGCAAGGGAAGCAAATGTAAAAGCACAACAAGAG
CAACACCACCAGCGCCGAAGCTCTGCCCGCCAGCTCCTCCAAGAACAAGC
AGGTTGTCTCCCCGGGGCGTGTAATGTCCTTCCCGACTGGGAATATGATG
TATACGACTTCTTCACCCACATCGTCCCCAAGCTCCACCCAGATATTTTG
ATCGTTAACAGCGGGCATTGGGCTCGCCTGCCGGGAGAATATGACATGCC
CCGCTTGAGTGAAGTGGTTCGGGAAGCAGTGCGAGCGTCGGGAGGTAGAG
CTATTTGGAAAACGACCACCGCACGTAGGTAAGTAGGAAGAGAGAAGGGA
AGAGATGAGAGTTTTGAATTATGTGATGCATCTATTTTTCTATCTCATCA
TTTCACTTTATTTATGATCAATACCATCCCTCCCCTTCACCTGTACACCC
CACCCCAACCTCAGGGAGCCCGCTGCCTTCCTTCCTGAAGACGATCTCAA
GGAATATTTTCATGGCGAAGGCTTCAGCATCCTCGATGCTGGCGCTATCA
CATATGCGGCTCGCGGCATTGAAACACACTTAAATGAGACTCAAAACACG
CACCTGTATTGGGACACATTGCACTTTTACGCTCCGATCTACGCGGGTTT
GAATAACGTCTTGCTCAATTACATTTGTCCGGTGTAGTGCGGGGGACACA
CATGCGTGCGTCAATGTAGCACAGAGGGGAAAAGATCGTAGGATGGATAA
GAAGGTTGAGGGCTGGCGTCAAAGTTGGACACATGATAACGAAGAAGTTT
CCCCTGCAGCTGCAAAAGGGAGCTGTGGAAGTGAATAAGGGGGCGAGCGA
ATCCACCCTTGACCAGAGGTTTTGTACAGACTTACAATTGAGGTTTATGA
GAAGTCGTAAATTACATATCATCAATGAAAGGCATAAACGGACTGT
back to top

Coding sequence (CDS) from alignment at chr12:301447..304542+

>NO12G00940.2 ID=NO12G00940.2|Name=NO12G00940.2|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr12:301447..304542+ (Nannochloropsis oceanica)
ATGGAAGCAAGCGAGACAGGGGGAAACATGGGAGTCCCGAGTCCCCAGAT
GGGTATTACGGTGGATGCCCACCATGTGACTGCTTCGGAGTCACCTAGAC
ACTTGAGACGTTCAGTTTTTGTGGCGGCAGGCGCGGGGCTCCTCCTGGGC
ACAATAATCCTTATGGTTCGGTCAGAGACTGGCAGCATGCGACCCTCCGT
CATATACAGTGCCTTAAGTGCAAAGTTGCGACAGACCGCCCAACCACCGG
CGCCACCATTTCTACTAACCGACGACGCAAATTTTCGGCAGGATGACATA
CGTTTTACGTGGGTGCCTCGGGAGGAGCACCAGGAACTGAATGCGGTGAA
GGAGGTTGATGCAGAGGCGGCACATGGGCAACAGGTGGCTGTTTACGACC
TGATCGTGGAGGGATATGACATGCAGATGTTTAAAGATCAGGCGGCGGCG
CATGCCTGCTTGAGGAATAAAAGTATTGTCTTTGTGGGCGACAGTCTGAC
GAGATACCAATACCTCAACTTGGTAAATTTCATTGAAAACGGGCAATGGG
GTGGCCCAGATCCGCAGCTCGAGAACGAGCTCCAGTGGGGAGGATGGCCG
CTTTTTTATGAGGGCACTAATGCCCGCTTTAATGGTCGAGAAATCTGCGA
CTGCTACCGAAAAGATCCCGCATTTCGGCGGGGGAACATCGAGAATCGGT
ATTATTACAATGAGGAGGCAAACGTGTGGGTGTCCTTCTTTCAGTGGTTT
CGAGAAGAGACGGGCCATCTGGGGCATGACTTTGACTGGTTGAACGTGTC
CTTGCCACCGCCGCGCAGTAGGCGGGCACCCAGTTGTCGAGGAAAGCCGA
ACAATGTGAGGATGGAAAAGAAGACGGAGGACAAATATCAGCACCAGCAA
CAGCACCACCACCACCACCACCAGCAGCAAGAACAACAGCAGCAACAGCA
ACAACAGCAGCAACAACAGCAGCAACAGCATCAGTATCAACAACAGCAAC
AGCGACAAGGAAAGCCAGCACTGCGAACCAAGCCCTCGCCCGCACCACCG
CTCAACTCTCCTCCTCTTGCTGCTGCCCCCTCTCTTCCTCCTCGCGCACT
TGACAATAAAACGGAAGGATACACGTCATTAGATGAAGCAGCAGCAGCAG
CAGCAACAACATCAACAACAACAACAACAACAACAACAGCAGCAGCAGCA
GCAGCAGTAGCAGAAGGAGAGAGTGGACACTCGCGCCAACTTCTCTCAGA
ACAGGCGGCGGCTTGCCTCCCCGGGGCGCACAAGCAACCGCCCCTACCAC
AAGCATCAGTGCCTGCACCACTAGTACGACGACCACCACCACCACCACCA
GCGGCAAGGGAAGCAAATGTAAAAGCACAACAAGAGCAACACCACCAGCG
CCGAAGCTCTGCCCGCCAGCTCCTCCAAGAACAAGCAGGTTGTCTCCCCG
GGGCGTGTAATGTCCTTCCCGACTGGGAATATGATGTATACGACTTCTTC
ACCCACATCGTCCCCAAGCTCCACCCAGATATTTTGATCGTTAACAGCGG
GCATTGGGCTCGCCTGCCGGGAGAATATGACATGCCCCGCTTGAGTGAAG
TGGTTCGGGAAGCAGTGCGAGCGTCGGGAGGTAGAGCTATTTGGAAAACG
ACCACCGCACGTAGGTAA
back to top
Synonyms
Publications