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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:295591..297895 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00910.1 vs.
Match: EWM25923.1 (iron-sulfur cluster-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 546.6 bits (1407), Expect = 1.000e-151 Identity = 262/359 (72.98%), Postives = 307/359 (85.52%), Query Frame = 0
Query: 34 SSTLSSSLSSSSARPTTPETTLASTSPSSPHKKRGRRRRGRQPEYDGGPVNESLVTSLPGGWKDVREEIKRHAETLGFARARVTTPEPASRFDQYKAWVAEGQHGEMGYLAREDRLARRADLDLILPGVQAVICTMTLYWPGKKGFPPASAMHATPTSSSSRIKPSPPLHTSSSLKRRGVISCYSWGTDYHDLITPRLQSLAEWTHTRFGGQGRWYVDTGPLMERDLAERAGLGFLGKNTLLINEGLGSGTFLAELLTTLPLPAETPRKKSGGCGACRRCISACPTGAISEDGYKIDARKCVSYLTIENKGGIPVDLRPKVKNLIYGCDICQQVCPWNRWSWPEHKTVRTLFATTTATA 393
S + SS++SS + +T SP ++RGRRR QPE DGGP+NE+LV + PGGW DVREEIK+HAE+LGFARARVTTPEP+SRF+QYKAW+ EG+HGEMGYLAREDRLARRADLDLILPG+QAVICTMTLYWPGKKGFPPAS+MHA P+S++ P P HT+S K+RGVISCYSWG DYH++ITPRL++LAEW HTR+GG+GRWYVDTGPLMERDL ERAGLGF+GKNTLLINE LGSGTFLAELLTTLPLP ETPRKKSGGCG CRRCISACPT AI +DGY IDAR+C+SYLTIENKG IP++LRP +KNL+YGCDICQQVCPWNRWSWP+++ +TLF+ + ++
Sbjct: 22 SRLIFSSIASSPEKLST-----------SPPRRRGRRR---QPECDGGPLNEALVATFPGGWSDVREEIKKHAESLGFARARVTTPEPSSRFEQYKAWIEEGKHGEMGYLAREDRLARRADLDLILPGLQAVICTMTLYWPGKKGFPPASSMHAAPSSTTLGPSPVRPGHTAS--KKRGVISCYSWGEDYHNIITPRLKALAEWMHTRYGGRGRWYVDTGPLMERDLGERAGLGFVGKNTLLINEHLGSGTFLAELLTTLPLPPETPRKKSGGCGKCRRCISACPTQAIHKDGYSIDARRCISYLTIENKGSIPIELRPSMKNLVYGCDICQQVCPWNRWSWPDNQP-KTLFSPSAPSS 363
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00910.1 ID=NO12G00910.1|Name=NO12G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2305bp
CGTCTTTATTTCCCATTTTCCGTCGTCCTCCTTGCTGGCCTCCTCTCAAG
ATATTCCCTGAATGCCCAGGACTATCAAACTGTCGACAGCATTCTCATTC
CTGTCCTCCTCCCCCCGCCAAATTATTACCCAGGAGGGCTTGCTCTTATC
CCCCCATGCGCGGCGGCCGCGTCCCCTCCTTCTCCCTCCTCCTCCTTCCT
ACATCGCGACCAGCCGCAGTCCTACGACCCCTCAGAAGAAGACGATCGCC
ACCATCCAGCACCTTATCCTCGTCATTGTCCTCCTCCTCGGCGCGGCCCA
CCACCCCAGAAACTACACTGGCATCAACCTCCCCATCCTCCCCACATAAA
AAGCGCGGACGACGCCGTCGTGGACGGCAACCCGAATACGACGGCGGCCC
GGTCAACGAATCTCTTGTCACATCTTTACCTGGGGGATGGAAAGATGTTC
GGGAGGAAATCAAAAGACACGCCGAAACCTTGGGCTTTGCCCGCGCACGA
GTCACCACACCCGAGCCCGCTAGCCGGTTTGATCAATACAAGGCCTGGGT
TGCTGAGGGGCAGCATGGTGAGATGGGTTACCTAGCCCGCGAGGATCGGC
TCGCACGACGAGCAGACCTCGATCTAATTCTACCTGGGGTCCAGGCAGTG
ATATGTACGATGACTCTGTACTGGCCAGGCAAAAAAGGCTTCCCCCCCGC
ATCAGCCATGCATGCAACGCCCACCTCTTCCTCCTCCAGAATCAAGCCAT
CACCACCTCTTCATACATCATCATCACTTAAACGAAGGGGTGTCATCAGC
TGTTATTCCTGGGGGACCGACTATCACGACCTCATAACTCCTCGTCTTCA
ATCGCTCGCGGAATGGACCCACACCCGCTTCGGGGGGCAAGGACGATGGT
ACGTTGACACCGGGCCTTTGATGGAAAGAGACCTTGCTGAACGAGCTGGG
CTTGGTTTCCTAGGCAAGAATACCCTCTTGATCAACGAGGGGCTGGGGAG
TGGGACGTTTCTGGCGGAGCTTTTGACGACGTTGCCGTTGCCTGCGGAGA
CCCCCAGGAAGAAGAGTGGGGGTTGCGGTGCCTGCCGTAGATGCATCTCG
GCGTGTCCTACGGGGGCGATCAGTGAGGATGGATACAAGATCGATGCCCG
GAAATGTGTGAGTTATTTGACGATTGAGAATAAGGGCGGCATCCCAGTGG
ATCTCCGACCGAAGGTAAAAAATCTGATATATGGGTGTGATATCTGCCAG
CAGGTATGTCCCTGGAATCGCTGGTCATGGCCGGAGCATAAGACCGTGCG
GACGCTCTTTGCTACAACTACTGCTACTGCTACTGCTGCAACAACTACCA
CTACTACTACCACTACGACTACTTCTGCTACTGCTGCTGCTGCTGCTGCT
GCTGCTGCTACCACAACTACTGTTGCGGCTACTGCTGCGAGTGCCTCGTC
GTTATCGTCTTCTTCCCTCTCACCCTCCTCCTCCTTCTCCCTCCCTCGCT
CTTCCTCCGATTTATCTTCCACCTCTAAAACCTCACTCCATCCCTCCGAC
CCTCCTCCTCCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCGTCTTC
TTTTCCTCCTCTCGAAACGAGTACTCCTGCTTTAATAGGGCTCCTTCGCG
CCCTCCAGACAGAAGAAGGCTTCAAGCACCGATTCGGAGGCTCGCCGATT
CAGAGAATAGGACGGGCAAGAATGCTGCGAAACGTCGCAGTGGCTGCAGG
TAACAGCCGAGATGAGAAGGGGGAAGAAAAGAGGTTGAAGTTGAAGTTGT
CATCGGTGGCCGTTGGTACCGCTGGGAGCTGCGGAAACAGGGAAGGAGGG
GGGGAGGGAGGAGTTAAGGAGGAGGAGAAGGACGAGGCGGAGGAGGAAGA
ATTGGTGAGGGTTTTGAAGGCAGTGTTGAAAAAGGAAGGGGATGAGATGG
TTCAGGAGCATTTGAAGTGGGCGATAGGGCGGTTGGAGGGAGGGAGGGAG
GAAAGGGAGGGGGTAGTGGGGACTTCCAGCACCAGCAGAACGATGGCTGC
CTGCCAAGGAGTCAAGGAGCGACCAAATCTTATGTAGGTATACACACGTA
TATATACAAATATGGAGAAGGTCAAATGTAAACCAAACAGTTTCTTCAAA
AAAAGAAACTGAGACGTGTGTGTTCAAAGACTGCATGCGAAGAAGCAGAC
CCGTGTCAGTGCTAGATAGTTAGGGTTATAACCAGGCCCTGCTTTTGGGG
TGCTGAAGGTGAGGGACTCGCTGAATTACTGAGAAAAGAACCAGAAAAGG
AGATC back to topprotein sequence of NO12G00910.1 >NO12G00910.1-protein ID=NO12G00910.1-protein|Name=NO12G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MRGGRVPSFSLLLLPTSRPAAVLRPLRRRRSPPSSTLSSSLSSSSARPTT
PETTLASTSPSSPHKKRGRRRRGRQPEYDGGPVNESLVTSLPGGWKDVRE
EIKRHAETLGFARARVTTPEPASRFDQYKAWVAEGQHGEMGYLAREDRLA
RRADLDLILPGVQAVICTMTLYWPGKKGFPPASAMHATPTSSSSRIKPSP
PLHTSSSLKRRGVISCYSWGTDYHDLITPRLQSLAEWTHTRFGGQGRWYV
DTGPLMERDLAERAGLGFLGKNTLLINEGLGSGTFLAELLTTLPLPAETP
RKKSGGCGACRRCISACPTGAISEDGYKIDARKCVSYLTIENKGGIPVDL
RPKVKNLIYGCDICQQVCPWNRWSWPEHKTVRTLFATTTATATAATTTTT
TTTTTTSATAAAAAAAAATTTTVAATAASASSLSSSSLSPSSSFSLPRSS
SDLSSTSKTSLHPSDPPPPPSPSPSPSPSPSSFPPLETSTPALIGLLRAL
QTEEGFKHRFGGSPIQRIGRARMLRNVAVAAGNSRDEKGEEKRLKLKLSS
VAVGTAGSCGNREGGGEGGVKEEEKDEAEEEELVRVLKAVLKKEGDEMVQ
EHLKWAIGRLEGGREEREGVVGTSSTSRTMAACQGVKERPNLM* back to topmRNA from alignment at chr12:295591..297895- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00910.1 ID=NO12G00910.1|Name=NO12G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2305bp|location=Sequence derived from alignment at chr12:295591..297895- (Nannochloropsis oceanica)
CGTCTTTATTTCCCATTTTCCGTCGTCCTCCTTGCTGGCCTCCTCTCAAG
ATATTCCCTGAATGCCCAGGACTATCAAACTGTCGACAGCATTCTCATTC
CTGTCCTCCTCCCCCCGCCAAATTATTACCCAGGAGGGCTTGCTCTTATC
CCCCCATGCGCGGCGGCCGCGTCCCCTCCTTCTCCCTCCTCCTCCTTCCT
ACATCGCGACCAGCCGCAGTCCTACGACCCCTCAGAAGAAGACGATCGCC
ACCATCCAGCACCTTATCCTCGTCATTGTCCTCCTCCTCGGCGCGGCCCA
CCACCCCAGAAACTACACTGGCATCAACCTCCCCATCCTCCCCACATAAA
AAGCGCGGACGACGCCGTCGTGGACGGCAACCCGAATACGACGGCGGCCC
GGTCAACGAATCTCTTGTCACATCTTTACCTGGGGGATGGAAAGATGTTC
GGGAGGAAATCAAAAGACACGCCGAAACCTTGGGCTTTGCCCGCGCACGA
GTCACCACACCCGAGCCCGCTAGCCGGTTTGATCAATACAAGGCCTGGGT
TGCTGAGGGGCAGCATGGTGAGATGGGTTACCTAGCCCGCGAGGATCGGC
TCGCACGACGAGCAGACCTCGATCTAATTCTACCTGGGGTCCAGGCAGTG
ATATGTACGATGACTCTGTACTGGCCAGGCAAAAAAGGCTTCCCCCCCGC
ATCAGCCATGCATGCAACGCCCACCTCTTCCTCCTCCAGAATCAAGCCAT
CACCACCTCTTCATACATCATCATCACTTAAACGAAGGGGTGTCATCAGC
TGTTATTCCTGGGGGACCGACTATCACGACCTCATAACTCCTCGTCTTCA
ATCGCTCGCGGAATGGACCCACACCCGCTTCGGGGGGCAAGGACGATGGT
ACGTTGACACCGGGCCTTTGATGGAAAGAGACCTTGCTGAACGAGCTGGG
CTTGGTTTCCTAGGCAAGAATACCCTCTTGATCAACGAGGGGCTGGGGAG
TGGGACGTTTCTGGCGGAGCTTTTGACGACGTTGCCGTTGCCTGCGGAGA
CCCCCAGGAAGAAGAGTGGGGGTTGCGGTGCCTGCCGTAGATGCATCTCG
GCGTGTCCTACGGGGGCGATCAGTGAGGATGGATACAAGATCGATGCCCG
GAAATGTGTGAGTTATTTGACGATTGAGAATAAGGGCGGCATCCCAGTGG
ATCTCCGACCGAAGGTAAAAAATCTGATATATGGGTGTGATATCTGCCAG
CAGGTATGTCCCTGGAATCGCTGGTCATGGCCGGAGCATAAGACCGTGCG
GACGCTCTTTGCTACAACTACTGCTACTGCTACTGCTGCAACAACTACCA
CTACTACTACCACTACGACTACTTCTGCTACTGCTGCTGCTGCTGCTGCT
GCTGCTGCTACCACAACTACTGTTGCGGCTACTGCTGCGAGTGCCTCGTC
GTTATCGTCTTCTTCCCTCTCACCCTCCTCCTCCTTCTCCCTCCCTCGCT
CTTCCTCCGATTTATCTTCCACCTCTAAAACCTCACTCCATCCCTCCGAC
CCTCCTCCTCCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCGTCTTC
TTTTCCTCCTCTCGAAACGAGTACTCCTGCTTTAATAGGGCTCCTTCGCG
CCCTCCAGACAGAAGAAGGCTTCAAGCACCGATTCGGAGGCTCGCCGATT
CAGAGAATAGGACGGGCAAGAATGCTGCGAAACGTCGCAGTGGCTGCAGG
TAACAGCCGAGATGAGAAGGGGGAAGAAAAGAGGTTGAAGTTGAAGTTGT
CATCGGTGGCCGTTGGTACCGCTGGGAGCTGCGGAAACAGGGAAGGAGGG
GGGGAGGGAGGAGTTAAGGAGGAGGAGAAGGACGAGGCGGAGGAGGAAGA
ATTGGTGAGGGTTTTGAAGGCAGTGTTGAAAAAGGAAGGGGATGAGATGG
TTCAGGAGCATTTGAAGTGGGCGATAGGGCGGTTGGAGGGAGGGAGGGAG
GAAAGGGAGGGGGTAGTGGGGACTTCCAGCACCAGCAGAACGATGGCTGC
CTGCCAAGGAGTCAAGGAGCGACCAAATCTTATGTAGGTATACACACGTA
TATATACAAATATGGAGAAGGTCAAATGTAAACCAAACAGTTTCTTCAAA
AAAAGAAACTGAGACGTGTGTGTTCAAAGACTGCATGCGAAGAAGCAGAC
CCGTGTCAGTGCTAGATAGTTAGGGTTATAACCAGGCCCTGCTTTTGGGG
TGCTGAAGGTGAGGGACTCGCTGAATTACTGAGAAAAGAACCAGAAAAGG
AGATC back to topCoding sequence (CDS) from alignment at chr12:295591..297895- >NO12G00910.1 ID=NO12G00910.1|Name=NO12G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at chr12:295591..297895- (Nannochloropsis oceanica)
ATGCGCGGCGGCCGCGTCCCCTCCTTCTCCCTCCTCCTCCTTCCTACATC
GCGACCAGCCGCAGTCCTACGACCCCTCAGAAGAAGACGATCGCCACCAT
CCAGCACCTTATCCTCGTCATTGTCCTCCTCCTCGGCGCGGCCCACCACC
CCAGAAACTACACTGGCATCAACCTCCCCATCCTCCCCACATAAAAAGCG
CGGACGACGCCGTCGTGGACGGCAACCCGAATACGACGGCGGCCCGGTCA
ACGAATCTCTTGTCACATCTTTACCTGGGGGATGGAAAGATGTTCGGGAG
GAAATCAAAAGACACGCCGAAACCTTGGGCTTTGCCCGCGCACGAGTCAC
CACACCCGAGCCCGCTAGCCGGTTTGATCAATACAAGGCCTGGGTTGCTG
AGGGGCAGCATGGTGAGATGGGTTACCTAGCCCGCGAGGATCGGCTCGCA
CGACGAGCAGACCTCGATCTAATTCTACCTGGGGTCCAGGCAGTGATATG
TACGATGACTCTGTACTGGCCAGGCAAAAAAGGCTTCCCCCCCGCATCAG
CCATGCATGCAACGCCCACCTCTTCCTCCTCCAGAATCAAGCCATCACCA
CCTCTTCATACATCATCATCACTTAAACGAAGGGGTGTCATCAGCTGTTA
TTCCTGGGGGACCGACTATCACGACCTCATAACTCCTCGTCTTCAATCGC
TCGCGGAATGGACCCACACCCGCTTCGGGGGGCAAGGACGATGGTACGTT
GACACCGGGCCTTTGATGGAAAGAGACCTTGCTGAACGAGCTGGGCTTGG
TTTCCTAGGCAAGAATACCCTCTTGATCAACGAGGGGCTGGGGAGTGGGA
CGTTTCTGGCGGAGCTTTTGACGACGTTGCCGTTGCCTGCGGAGACCCCC
AGGAAGAAGAGTGGGGGTTGCGGTGCCTGCCGTAGATGCATCTCGGCGTG
TCCTACGGGGGCGATCAGTGAGGATGGATACAAGATCGATGCCCGGAAAT
GTGTGAGTTATTTGACGATTGAGAATAAGGGCGGCATCCCAGTGGATCTC
CGACCGAAGGTAAAAAATCTGATATATGGGTGTGATATCTGCCAGCAGGT
ATGTCCCTGGAATCGCTGGTCATGGCCGGAGCATAAGACCGTGCGGACGC
TCTTTGCTACAACTACTGCTACTGCTACTGCTGCAACAACTACCACTACT
ACTACCACTACGACTACTTCTGCTACTGCTGCTGCTGCTGCTGCTGCTGC
TGCTACCACAACTACTGTTGCGGCTACTGCTGCGAGTGCCTCGTCGTTAT
CGTCTTCTTCCCTCTCACCCTCCTCCTCCTTCTCCCTCCCTCGCTCTTCC
TCCGATTTATCTTCCACCTCTAAAACCTCACTCCATCCCTCCGACCCTCC
TCCTCCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCGTCTTCTTTTC
CTCCTCTCGAAACGAGTACTCCTGCTTTAATAGGGCTCCTTCGCGCCCTC
CAGACAGAAGAAGGCTTCAAGCACCGATTCGGAGGCTCGCCGATTCAGAG
AATAGGACGGGCAAGAATGCTGCGAAACGTCGCAGTGGCTGCAGGTAACA
GCCGAGATGAGAAGGGGGAAGAAAAGAGGTTGAAGTTGAAGTTGTCATCG
GTGGCCGTTGGTACCGCTGGGAGCTGCGGAAACAGGGAAGGAGGGGGGGA
GGGAGGAGTTAAGGAGGAGGAGAAGGACGAGGCGGAGGAGGAAGAATTGG
TGAGGGTTTTGAAGGCAGTGTTGAAAAAGGAAGGGGATGAGATGGTTCAG
GAGCATTTGAAGTGGGCGATAGGGCGGTTGGAGGGAGGGAGGGAGGAAAG
GGAGGGGGTAGTGGGGACTTCCAGCACCAGCAGAACGATGGCTGCCTGCC
AAGGAGTCAAGGAGCGACCAAATCTTATGTAG back to top
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