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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:286644..289292 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00870.1 vs.
Match: XP_005854169.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]; XP_005854272.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]; EKU22090.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]; EKU22192.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 217.2 bits (552), Expect = 1.000e-52 Identity = 175/430 (40.70%), Postives = 231/430 (53.72%), Query Frame = 0
Query: 48 TSTKTASTTRPIATEYIDNHTPALPAISPTTVAPHPRRSPPFPPLDLASPHVRLEIRPATIDELSLIVDARLQVFGRQKKCLPLSHS--PHFSSYSASSPTCATPGADAAASAAATAAAAEEWKVQSIQNLLARRAKGAIVFVATARDMRRPEAPPVLVGSVEASTHEFAEVGFSPCLSEARVREKEEEEEDREDDYYVHCRPSSWT-------TTLTTTTGSSSSWAS---------------------------PSPPLQREKGSKLYITGMMVSEAFRRQGVAASLLRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAAAIGLYKGPFSSRRYSFAYKRLAVGFGTAGGAAGAGAAAVGAAAA----------VGAGDREPVSGRGRFVVGSVGVLQHQQQQQQQQQQPQ 432
+ T A RP + D+H +P T H S DL SP+VRLE+RPA + EL+L+VD R++VFG K+ + P+ + S S +A + WK +S+QNL+AR++KG+++FV TARD+R P+A PVLV SVEASTHEF EVGFSPCL A+V ++EE+ E E+ Y W + GSS AS PSP +R K SKLY+TGMMV +AFRRQGVAA+LL AV+ +A +NYICLYV+ N SA RLY+K+GY VV FSPQAE+FA+ IGLYKG +++R+YSFAY+RL GGA G A G A+ G GD G GR V G G + Q ++ ++ PQ
Sbjct: 9 SETAAAPAIRPSS----DSHKEHVPVADTLTYLSHHSPSS----FDLRSPYVRLEVRPANLQELNLVVDMRMEVFGPGKEASTAGSASIPNHTGLSGPSEVEGRETKGRGGTAPPVPDMSAGWKAESLQNLIARQSKGSVIFVVTARDVRHPDAQPVLVASVEASTHEFHEVGFSPCL--AQVEDEEEDGEGGEEGAYGWRLQGGWDRGGAGFWAGIPDARGSSVGKASCSSSQPSVLLARTSFLDTPPENKGTGIPSPAHER-KQSKLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRLPPR-RALGGAWPVGQATRGPASLDGQDPLRLHWAGGGDG---PGMGREVDGK-GDGGAEMQGRESRRAPQ 422
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00870.1 ID=NO12G00870.1|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp GTGCTCTCTCGGTTGAGACTGATATGGTCCTGGCTTGCAAAGAAGAGCCT CGGGTAACGTGCGGTCCCTTGGTACGCTGCCTTTCGTACGAACATTTTCA CCAATACACTCTCGTGCAATCTTTGACGTCGCACTAGCAGAGGGGTGTGG GGCTTGCCGTGGCACGATTTTTCAATCGACCAAGGGGTTCGTCTTCAACT CCCGCCGGCCTCATGAAACAGCCATCTGCTCGCTGTGTTGCTTCTATATG CTGGATGCGATTGCTGTTTGCATTGGCCCCTCCCGGGCCGTGCCCCCGCA CATGACTGAGGCGCACAGCAAACTCTAGACGACAACATGCGTTGACTACG CAGTCAAGCTGTGCGCTTTCGGCATGATCCCTTATGTGGCAGAGTCTGCC TTTTTCGCCCATCGTCCGATCTGTCTCATTTGTTCTGCTTCCGGTACTCC TTTCTTCCCTCCCTCCTCCTCCTCGTAGATGCGACGACTGTGTGCGTTAG GCCTGAAATCATGCCGGCCACTACACACGCCTATGGGCTTCCCTCTCCTC CTCCTCGCGCTCCTTCTACCTGAGCTTGCCACCGCGTTGGTCTGTTCCCC ATCCTTCTCCCCCCCAATCACATCAACTAAGACCGCCAGCACCACAAGAC CTATCGCCACTGAGTACATCGACAATCATACACCTGCTCTTCCTGCTATA AGTCCTACCACCGTAGCCCCGCATCCCAGAAGATCCCCTCCCTTTCCCCC CTTGGACCTCGCTAGCCCCCATGTCCGCCTTGAAATCCGTCCCGCCACCA TCGACGAGCTCTCCTTGATCGTAGACGCTCGGTTACAAGTCTTCGGGCGA CAAAAAAAGTGCCTCCCCCTCTCTCACAGCCCCCACTTCTCCTCCTACTC TGCCTCCTCCCCAACATGCGCCACACCAGGTGCCGATGCAGCAGCATCGG CAGCAGCAACAGCAGCCGCGGCCGAAGAATGGAAAGTGCAATCGATCCAA AATTTGCTGGCACGAAGAGCCAAGGGCGCGATTGTATTTGTCGCGACGGC GAGAGATATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGG AAGCAAGCACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCC GAGGCAAGGGTGAGGGAGAAAGAGGAGGAAGAGGAGGATCGGGAAGATGA CTACTATGTTCATTGTCGGCCTTCATCTTGGACCACAACTCTCACCACTA CCACCGGTAGCAGCAGCAGCTGGGCATCGCCCTCCCCTCCCCTCCAAAGG GAGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTT TCGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATG CTTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAAT GAATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATT CTCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGC CTTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGG TTTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGC TGCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTA GATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAA CAACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATT GTCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGC CTTTTTGAGGGGGCAAAGTGCAGAGAAGCAGGAAAAAGAGCAGAAGAAGC AGAAATGATCGAGAGAAGGAGTGCGGAGTCCTGATGAGGAGGAGGAGGAG AAACGGACATGTGTATTTCTCGTATCGTTTTCCGCATACCCTATTTCCGG TTTCTCATGAACATAATTTGTATAGGGCTGCTTTTGCCCGATGAGCCAGC ACTATGACATGATGAGGGAATGATAACCTTCTGTCAACGGTTTGGGAGAT AAAGTAACTGACGACAGCAAAGAGGCAAAGAGGCGAATAACTGCATGCAT GCACGGGGCAGTGAATAAGGGACGAGCCAAGAATCATGAACTGATAAGTA ACAACAAACACGAGAAGGATAAGAAGGATAAGAAGAGGAAGAAGACGTGT ACCTGTAATTCGAGTAACGGACAAATAGCTGTTTGGTGCGTGAGTGTTTG CGTAAATTGCGCGGTCACCCACCATGCGCACATGGGCATGTCGCAAGCCT CACAAAAAGCGGAGAAACGTGAGGAGACCTGAAACACTGAATGATTTACA TATGAGGCAAGGCAATGCATACGCACTTTTGAATTGCCTGGCTTTGGCCA TGACACATGCTTACCCCACTGTGGAAAAAGAATCCGGAAAGGAAGGAATG GGAAAGAAATGAAGAGAATAAGAGATGGTTTGATATGGAAAACTCAAATT TGGGATGTATTCGCCTGCTTTTACTTAGTGGCCGTCCCTTTGATTTGTGC TCGCAAATAATTGAAATATCGACGAAAGACGAAGAAAAAATACTTGGTT back to topprotein sequence of NO12G00870.1 >NO12G00870.1-protein ID=NO12G00870.1-protein|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp MRRLCALGLKSCRPLHTPMGFPLLLLALLLPELATALVCSPSFSPPITST KTASTTRPIATEYIDNHTPALPAISPTTVAPHPRRSPPFPPLDLASPHVR LEIRPATIDELSLIVDARLQVFGRQKKCLPLSHSPHFSSYSASSPTCATP GADAAASAAATAAAAEEWKVQSIQNLLARRAKGAIVFVATARDMRRPEAP PVLVGSVEASTHEFAEVGFSPCLSEARVREKEEEEEDREDDYYVHCRPSS WTTTLTTTTGSSSSWASPSPPLQREKGSKLYITGMMVSEAFRRQGVAASL LRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAA AIGLYKGPFSSRRYSFAYKRLAVGFGTAGGAAGAGAAAVGAAAAVGAGDR EPVSGRGRFVVGSVGVLQHQQQQQQQQQQPQPPQLEGESLLSEPNKPFPA RSPSLVMPF* back to topmRNA from alignment at chr12:286644..289292+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00870.1 ID=NO12G00870.1|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr12:286644..289292+ (Nannochloropsis oceanica) GTGCTCTCTCGGTTGAGACTGATATGGTCCTGGCTTGCAAAGAAGAGCCT
CGGGTAACGTGCGGTCCCTTGGTACGCTGCCTTTCGTACGAACATTTTCA
CCAATACACTCTCGTGCAATCTTTGACGTCGCACTAGCAGAGGGGTGTGG
GGCTTGCCGTGGCACGATTTTTCAATCGACCAAGGGGTTCGTCTTCAACT
CCCGCCGGCCTCATGAAACAGCCATCTGCTCGCTGTGTTGCTTCTATATG
CTGGATGCGATTGCTGTTTGCATTGGCCCCTCCCGGGCCGTGCCCCCGCA
CATGACTGAGGCGCACAGCAAACTCTAGACGACAACATGCGTTGACTACG
CAGTCAAGCTGTGCGCTTTCGGCATGATCCCTTATGTGGCAGAGTCTGCC
TTTTTCGCCCATCGTCCGATCTGTCTCATTTGTTCTGCTTCCGGTACTCC
TTTCTTCCCTCCCTCCTCCTCCTCGTAGATGCGACGACTGTGTGCGTTAG
GCCTGAAATCATGCCGGCCACTACACACGCCTATGGGCTTCCCTCTCCTC
CTCCTCGCGCTCCTTCTACCTGAGCTTGCCACCGCGTTGGTCTGTTCCCC
ATCCTTCTCCCCCCCAATCACATCAACTAAGACCGCCAGCACCACAAGAC
CTATCGCCACTGAGTACATCGACAATCATACACCTGCTCTTCCTGCTATA
AGTCCTACCACCGTAGCCCCGCATCCCAGAAGATCCCCTCCCTTTCCCCC
CTTGGACCTCGCTAGCCCCCATGTCCGCCTTGAAATCCGTCCCGCCACCA
TCGACGAGCTCTCCTTGATCGTAGACGCTCGGTTACAAGTCTTCGGGCGA
CAAAAAAAGTGCCTCCCCCTCTCTCACAGCCCCCACTTCTCCTCCTACTC
TGCCTCCTCCCCAACATGCGCCACACCAGGTGCCGATGCAGCAGCATCGG
CAGCAGCAACAGCAGCCGCGGCCGAAGAATGGAAAGTGCAATCGATCCAA
AATTTGCTGGCACGAAGAGCCAAGGGCGCGATTGTATTTGTCGCGACGGC
GAGAGATATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGG
AAGCAAGCACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCC
GAGGCAAGGGTGAGGGAGAAAGAGGAGGAAGAGGAGGATCGGGAAGATGA
CTACTATGTTCATTGTCGGCCTTCATCTTGGACCACAACTCTCACCACTA
CCACCGGTAGCAGCAGCAGCTGGGCATCGCCCTCCCCTCCCCTCCAAAGG
GAGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTT
TCGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATG
CTTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAAT
GAATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATT
CTCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGC
CTTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGG
TTTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGC
TGCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTA
GATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAA
CAACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATT
GTCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGC
CTTTTTGAGGGGGCAAAGTGCAGAGAAGCAGGAAAAAGAGCAGAAGAAGC
AGAAATGATCGAGAGAAGGAGTGCGGAGTCCTGATGAGGAGGAGGAGGAG
AAACGGACATGTGTATTTCTCGTATCGTTTTCCGCATACCCTATTTCCGG
TTTCTCATGAACATAATTTGTATAGGGCTGCTTTTGCCCGATGAGCCAGC
ACTATGACATGATGAGGGAATGATAACCTTCTGTCAACGGTTTGGGAGAT
AAAGTAACTGACGACAGCAAAGAGGCAAAGAGGCGAATAACTGCATGCAT
GCACGGGGCAGTGAATAAGGGACGAGCCAAGAATCATGAACTGATAAGTA
ACAACAAACACGAGAAGGATAAGAAGGATAAGAAGAGGAAGAAGACGTGT
ACCTGTAATTCGAGTAACGGACAAATAGCTGTTTGGTGCGTGAGTGTTTG
CGTAAATTGCGCGGTCACCCACCATGCGCACATGGGCATGTCGCAAGCCT
CACAAAAAGCGGAGAAACGTGAGGAGACCTGAAACACTGAATGATTTACA
TATGAGGCAAGGCAATGCATACGCACTTTTGAATTGCCTGGCTTTGGCCA
TGACACATGCTTACCCCACTGTGGAAAAAGAATCCGGAAAGGAAGGAATG
GGAAAGAAATGAAGAGAATAAGAGATGGTTTGATATGGAAAACTCAAATT
TGGGATGTATTCGCCTGCTTTTACTTAGTGGCCGTCCCTTTGATTTGTGC
TCGCAAATAATTGAAATATCGACGAAAGACGAAGAAAAAATACTTGGTT back to topCoding sequence (CDS) from alignment at chr12:286644..289292+ >NO12G00870.1 ID=NO12G00870.1|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr12:286644..289292+ (Nannochloropsis oceanica) ATGCGACGACTGTGTGCGTTAGGCCTGAAATCATGCCGGCCACTACACAC GCCTATGGGCTTCCCTCTCCTCCTCCTCGCGCTCCTTCTACCTGAGCTTG CCACCGCGTTGGTCTGTTCCCCATCCTTCTCCCCCCCAATCACATCAACT AAGACCGCCAGCACCACAAGACCTATCGCCACTGAGTACATCGACAATCA TACACCTGCTCTTCCTGCTATAAGTCCTACCACCGTAGCCCCGCATCCCA GAAGATCCCCTCCCTTTCCCCCCTTGGACCTCGCTAGCCCCCATGTCCGC CTTGAAATCCGTCCCGCCACCATCGACGAGCTCTCCTTGATCGTAGACGC TCGGTTACAAGTCTTCGGGCGACAAAAAAAGTGCCTCCCCCTCTCTCACA GCCCCCACTTCTCCTCCTACTCTGCCTCCTCCCCAACATGCGCCACACCA GGTGCCGATGCAGCAGCATCGGCAGCAGCAACAGCAGCCGCGGCCGAAGA ATGGAAAGTGCAATCGATCCAAAATTTGCTGGCACGAAGAGCCAAGGGCG CGATTGTATTTGTCGCGACGGCGAGAGATATGAGGAGGCCAGAGGCACCT CCGGTGTTGGTGGGCTCGGTGGAAGCAAGCACACATGAGTTTGCCGAAGT TGGTTTCAGCCCCTGTCTGTCCGAGGCAAGGGTGAGGGAGAAAGAGGAGG AAGAGGAGGATCGGGAAGATGACTACTATGTTCATTGTCGGCCTTCATCT TGGACCACAACTCTCACCACTACCACCGGTAGCAGCAGCAGCTGGGCATC GCCCTCCCCTCCCCTCCAAAGGGAGAAAGGCAGCAAGCTCTACATTACGG GTATGATGGTTTCGGAAGCCTTTCGCAGACAAGGAGTCGCCGCCTCTCTC CTTCGTGCCGTTGACACCCATGCTTATAAAAATAACTTGAACTATATCTG TTTGTATGTCGAGGGCGGCAATGAATCGGCGCTGCGGTTGTATGAGAAGA ATGGGTACAGTGTGGTTGCATTCTCACCCCAAGCAGAAAGCTTTGCCGCG GCGATTGGGCTGTACAAAGGGCCTTTTTCATCACGTCGATATTCATTTGC GTACAAACGGTTGGCGGTGGGGTTTGGGACTGCTGGTGGTGCTGCTGGTG CTGGTGCTGCTGCTGTCGGTGCTGCTGCTGCCGTTGGTGCAGGTGATAGG GAGCCCGTGTCCGGGCGTGGTAGATTTGTTGTGGGTAGTGTTGGGGTTTT GCAGCATCAGCAGCAGCAGCAACAACAACAGCAGCAGCCGCAGCCCCCGC AGCTGGAGGGGGAAAGCTTATTGTCCGAACCAAACAAGCCGTTTCCGGCG CGGTCGCCATCCTTGGTGATGCCTTTTTGA back to top
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