NO12G00870.1, NO12G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00870.1
Unique NameNO12G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2649
Alignment locationchr12:286644..289292 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:286644..289292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00870.1 vs.
Match: XP_005854169.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]; XP_005854272.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]; EKU22090.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]; EKU22192.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 217.2 bits (552), Expect = 1.000e-52
Identity = 175/430 (40.70%), Postives = 231/430 (53.72%), Query Frame = 0
Query:   48 TSTKTASTTRPIATEYIDNHTPALPAISPTTVAPHPRRSPPFPPLDLASPHVRLEIRPATIDELSLIVDARLQVFGRQKKCLPLSHS--PHFSSYSASSPTCATPGADAAASAAATAAAAEEWKVQSIQNLLARRAKGAIVFVATARDMRRPEAPPVLVGSVEASTHEFAEVGFSPCLSEARVREKEEEEEDREDDYYVHCRPSSWT-------TTLTTTTGSSSSWAS---------------------------PSPPLQREKGSKLYITGMMVSEAFRRQGVAASLLRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAAAIGLYKGPFSSRRYSFAYKRLAVGFGTAGGAAGAGAAAVGAAAA----------VGAGDREPVSGRGRFVVGSVGVLQHQQQQQQQQQQPQ 432
            + T  A   RP +    D+H   +P     T   H   S      DL SP+VRLE+RPA + EL+L+VD R++VFG  K+      +  P+ +  S  S            +A      +  WK +S+QNL+AR++KG+++FV TARD+R P+A PVLV SVEASTHEF EVGFSPCL  A+V ++EE+ E  E+  Y       W          +    GSS   AS                           PSP  +R K SKLY+TGMMV +AFRRQGVAA+LL AV+ +A    +NYICLYV+  N SA RLY+K+GY VV FSPQAE+FA+ IGLYKG +++R+YSFAY+RL       GGA   G A  G A+            G GD     G GR V G  G    + Q ++ ++ PQ
Sbjct:    9 SETAAAPAIRPSS----DSHKEHVPVADTLTYLSHHSPSS----FDLRSPYVRLEVRPANLQELNLVVDMRMEVFGPGKEASTAGSASIPNHTGLSGPSEVEGRETKGRGGTAPPVPDMSAGWKAESLQNLIARQSKGSVIFVVTARDVRHPDAQPVLVASVEASTHEFHEVGFSPCL--AQVEDEEEDGEGGEEGAYGWRLQGGWDRGGAGFWAGIPDARGSSVGKASCSSSQPSVLLARTSFLDTPPENKGTGIPSPAHER-KQSKLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRLPPR-RALGGAWPVGQATRGPASLDGQDPLRLHWAGGGDG---PGMGREVDGK-GDGGAEMQGRESRRAPQ 422          
The following BLAST results are available for this feature:
BLAST of NO12G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854169.11.000e-5240.70gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00870NO12G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00870.1NO12G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00870.1.cds1NO12G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00870.1 ID=NO12G00870.1|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp
GTGCTCTCTCGGTTGAGACTGATATGGTCCTGGCTTGCAAAGAAGAGCCT
CGGGTAACGTGCGGTCCCTTGGTACGCTGCCTTTCGTACGAACATTTTCA
CCAATACACTCTCGTGCAATCTTTGACGTCGCACTAGCAGAGGGGTGTGG
GGCTTGCCGTGGCACGATTTTTCAATCGACCAAGGGGTTCGTCTTCAACT
CCCGCCGGCCTCATGAAACAGCCATCTGCTCGCTGTGTTGCTTCTATATG
CTGGATGCGATTGCTGTTTGCATTGGCCCCTCCCGGGCCGTGCCCCCGCA
CATGACTGAGGCGCACAGCAAACTCTAGACGACAACATGCGTTGACTACG
CAGTCAAGCTGTGCGCTTTCGGCATGATCCCTTATGTGGCAGAGTCTGCC
TTTTTCGCCCATCGTCCGATCTGTCTCATTTGTTCTGCTTCCGGTACTCC
TTTCTTCCCTCCCTCCTCCTCCTCGTAGATGCGACGACTGTGTGCGTTAG
GCCTGAAATCATGCCGGCCACTACACACGCCTATGGGCTTCCCTCTCCTC
CTCCTCGCGCTCCTTCTACCTGAGCTTGCCACCGCGTTGGTCTGTTCCCC
ATCCTTCTCCCCCCCAATCACATCAACTAAGACCGCCAGCACCACAAGAC
CTATCGCCACTGAGTACATCGACAATCATACACCTGCTCTTCCTGCTATA
AGTCCTACCACCGTAGCCCCGCATCCCAGAAGATCCCCTCCCTTTCCCCC
CTTGGACCTCGCTAGCCCCCATGTCCGCCTTGAAATCCGTCCCGCCACCA
TCGACGAGCTCTCCTTGATCGTAGACGCTCGGTTACAAGTCTTCGGGCGA
CAAAAAAAGTGCCTCCCCCTCTCTCACAGCCCCCACTTCTCCTCCTACTC
TGCCTCCTCCCCAACATGCGCCACACCAGGTGCCGATGCAGCAGCATCGG
CAGCAGCAACAGCAGCCGCGGCCGAAGAATGGAAAGTGCAATCGATCCAA
AATTTGCTGGCACGAAGAGCCAAGGGCGCGATTGTATTTGTCGCGACGGC
GAGAGATATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGG
AAGCAAGCACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCC
GAGGCAAGGGTGAGGGAGAAAGAGGAGGAAGAGGAGGATCGGGAAGATGA
CTACTATGTTCATTGTCGGCCTTCATCTTGGACCACAACTCTCACCACTA
CCACCGGTAGCAGCAGCAGCTGGGCATCGCCCTCCCCTCCCCTCCAAAGG
GAGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTT
TCGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATG
CTTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAAT
GAATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATT
CTCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGC
CTTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGG
TTTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGC
TGCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTA
GATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAA
CAACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATT
GTCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGC
CTTTTTGAGGGGGCAAAGTGCAGAGAAGCAGGAAAAAGAGCAGAAGAAGC
AGAAATGATCGAGAGAAGGAGTGCGGAGTCCTGATGAGGAGGAGGAGGAG
AAACGGACATGTGTATTTCTCGTATCGTTTTCCGCATACCCTATTTCCGG
TTTCTCATGAACATAATTTGTATAGGGCTGCTTTTGCCCGATGAGCCAGC
ACTATGACATGATGAGGGAATGATAACCTTCTGTCAACGGTTTGGGAGAT
AAAGTAACTGACGACAGCAAAGAGGCAAAGAGGCGAATAACTGCATGCAT
GCACGGGGCAGTGAATAAGGGACGAGCCAAGAATCATGAACTGATAAGTA
ACAACAAACACGAGAAGGATAAGAAGGATAAGAAGAGGAAGAAGACGTGT
ACCTGTAATTCGAGTAACGGACAAATAGCTGTTTGGTGCGTGAGTGTTTG
CGTAAATTGCGCGGTCACCCACCATGCGCACATGGGCATGTCGCAAGCCT
CACAAAAAGCGGAGAAACGTGAGGAGACCTGAAACACTGAATGATTTACA
TATGAGGCAAGGCAATGCATACGCACTTTTGAATTGCCTGGCTTTGGCCA
TGACACATGCTTACCCCACTGTGGAAAAAGAATCCGGAAAGGAAGGAATG
GGAAAGAAATGAAGAGAATAAGAGATGGTTTGATATGGAAAACTCAAATT
TGGGATGTATTCGCCTGCTTTTACTTAGTGGCCGTCCCTTTGATTTGTGC
TCGCAAATAATTGAAATATCGACGAAAGACGAAGAAAAAATACTTGGTT
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protein sequence of NO12G00870.1

>NO12G00870.1-protein ID=NO12G00870.1-protein|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MRRLCALGLKSCRPLHTPMGFPLLLLALLLPELATALVCSPSFSPPITST
KTASTTRPIATEYIDNHTPALPAISPTTVAPHPRRSPPFPPLDLASPHVR
LEIRPATIDELSLIVDARLQVFGRQKKCLPLSHSPHFSSYSASSPTCATP
GADAAASAAATAAAAEEWKVQSIQNLLARRAKGAIVFVATARDMRRPEAP
PVLVGSVEASTHEFAEVGFSPCLSEARVREKEEEEEDREDDYYVHCRPSS
WTTTLTTTTGSSSSWASPSPPLQREKGSKLYITGMMVSEAFRRQGVAASL
LRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAA
AIGLYKGPFSSRRYSFAYKRLAVGFGTAGGAAGAGAAAVGAAAAVGAGDR
EPVSGRGRFVVGSVGVLQHQQQQQQQQQQPQPPQLEGESLLSEPNKPFPA
RSPSLVMPF*
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mRNA from alignment at chr12:286644..289292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00870.1 ID=NO12G00870.1|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr12:286644..289292+ (Nannochloropsis oceanica)
GTGCTCTCTCGGTTGAGACTGATATGGTCCTGGCTTGCAAAGAAGAGCCT CGGGTAACGTGCGGTCCCTTGGTACGCTGCCTTTCGTACGAACATTTTCA CCAATACACTCTCGTGCAATCTTTGACGTCGCACTAGCAGAGGGGTGTGG GGCTTGCCGTGGCACGATTTTTCAATCGACCAAGGGGTTCGTCTTCAACT CCCGCCGGCCTCATGAAACAGCCATCTGCTCGCTGTGTTGCTTCTATATG CTGGATGCGATTGCTGTTTGCATTGGCCCCTCCCGGGCCGTGCCCCCGCA CATGACTGAGGCGCACAGCAAACTCTAGACGACAACATGCGTTGACTACG CAGTCAAGCTGTGCGCTTTCGGCATGATCCCTTATGTGGCAGAGTCTGCC TTTTTCGCCCATCGTCCGATCTGTCTCATTTGTTCTGCTTCCGGTACTCC TTTCTTCCCTCCCTCCTCCTCCTCGTAGATGCGACGACTGTGTGCGTTAG GCCTGAAATCATGCCGGCCACTACACACGCCTATGGGCTTCCCTCTCCTC CTCCTCGCGCTCCTTCTACCTGAGCTTGCCACCGCGTTGGTCTGTTCCCC ATCCTTCTCCCCCCCAATCACATCAACTAAGACCGCCAGCACCACAAGAC CTATCGCCACTGAGTACATCGACAATCATACACCTGCTCTTCCTGCTATA AGTCCTACCACCGTAGCCCCGCATCCCAGAAGATCCCCTCCCTTTCCCCC CTTGGACCTCGCTAGCCCCCATGTCCGCCTTGAAATCCGTCCCGCCACCA TCGACGAGCTCTCCTTGATCGTAGACGCTCGGTTACAAGTCTTCGGGCGA CAAAAAAAGTGCCTCCCCCTCTCTCACAGCCCCCACTTCTCCTCCTACTC TGCCTCCTCCCCAACATGCGCCACACCAGGTGCCGATGCAGCAGCATCGG CAGCAGCAACAGCAGCCGCGGCCGAAGAATGGAAAGTGCAATCGATCCAA AATTTGCTGGCACGAAGAGCCAAGGGCGCGATTGTATTTGTCGCGACGGC GAGAGATATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGG AAGCAAGCACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCC GAGGCAAGGGTGAGGGAGAAAGAGGAGGAAGAGGAGGATCGGGAAGATGA CTACTATGTTCATTGTCGGCCTTCATCTTGGACCACAACTCTCACCACTA CCACCGGTAGCAGCAGCAGCTGGGCATCGCCCTCCCCTCCCCTCCAAAGG GAGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTT TCGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATG CTTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAAT GAATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATT CTCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGC CTTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGG TTTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGC TGCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTA GATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAA CAACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATT GTCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGC CTTTTTGAGGGGGCAAAGTGCAGAGAAGCAGGAAAAAGAGCAGAAGAAGC AGAAATGATCGAGAGAAGGAGTGCGGAGTCCTGATGAGGAGGAGGAGGAG AAACGGACATGTGTATTTCTCGTATCGTTTTCCGCATACCCTATTTCCGG TTTCTCATGAACATAATTTGTATAGGGCTGCTTTTGCCCGATGAGCCAGC ACTATGACATGATGAGGGAATGATAACCTTCTGTCAACGGTTTGGGAGAT AAAGTAACTGACGACAGCAAAGAGGCAAAGAGGCGAATAACTGCATGCAT GCACGGGGCAGTGAATAAGGGACGAGCCAAGAATCATGAACTGATAAGTA ACAACAAACACGAGAAGGATAAGAAGGATAAGAAGAGGAAGAAGACGTGT ACCTGTAATTCGAGTAACGGACAAATAGCTGTTTGGTGCGTGAGTGTTTG CGTAAATTGCGCGGTCACCCACCATGCGCACATGGGCATGTCGCAAGCCT CACAAAAAGCGGAGAAACGTGAGGAGACCTGAAACACTGAATGATTTACA TATGAGGCAAGGCAATGCATACGCACTTTTGAATTGCCTGGCTTTGGCCA TGACACATGCTTACCCCACTGTGGAAAAAGAATCCGGAAAGGAAGGAATG GGAAAGAAATGAAGAGAATAAGAGATGGTTTGATATGGAAAACTCAAATT TGGGATGTATTCGCCTGCTTTTACTTAGTGGCCGTCCCTTTGATTTGTGC TCGCAAATAATTGAAATATCGACGAAAGACGAAGAAAAAATACTTGGTT
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Coding sequence (CDS) from alignment at chr12:286644..289292+

>NO12G00870.1 ID=NO12G00870.1|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr12:286644..289292+ (Nannochloropsis oceanica)
ATGCGACGACTGTGTGCGTTAGGCCTGAAATCATGCCGGCCACTACACAC
GCCTATGGGCTTCCCTCTCCTCCTCCTCGCGCTCCTTCTACCTGAGCTTG
CCACCGCGTTGGTCTGTTCCCCATCCTTCTCCCCCCCAATCACATCAACT
AAGACCGCCAGCACCACAAGACCTATCGCCACTGAGTACATCGACAATCA
TACACCTGCTCTTCCTGCTATAAGTCCTACCACCGTAGCCCCGCATCCCA
GAAGATCCCCTCCCTTTCCCCCCTTGGACCTCGCTAGCCCCCATGTCCGC
CTTGAAATCCGTCCCGCCACCATCGACGAGCTCTCCTTGATCGTAGACGC
TCGGTTACAAGTCTTCGGGCGACAAAAAAAGTGCCTCCCCCTCTCTCACA
GCCCCCACTTCTCCTCCTACTCTGCCTCCTCCCCAACATGCGCCACACCA
GGTGCCGATGCAGCAGCATCGGCAGCAGCAACAGCAGCCGCGGCCGAAGA
ATGGAAAGTGCAATCGATCCAAAATTTGCTGGCACGAAGAGCCAAGGGCG
CGATTGTATTTGTCGCGACGGCGAGAGATATGAGGAGGCCAGAGGCACCT
CCGGTGTTGGTGGGCTCGGTGGAAGCAAGCACACATGAGTTTGCCGAAGT
TGGTTTCAGCCCCTGTCTGTCCGAGGCAAGGGTGAGGGAGAAAGAGGAGG
AAGAGGAGGATCGGGAAGATGACTACTATGTTCATTGTCGGCCTTCATCT
TGGACCACAACTCTCACCACTACCACCGGTAGCAGCAGCAGCTGGGCATC
GCCCTCCCCTCCCCTCCAAAGGGAGAAAGGCAGCAAGCTCTACATTACGG
GTATGATGGTTTCGGAAGCCTTTCGCAGACAAGGAGTCGCCGCCTCTCTC
CTTCGTGCCGTTGACACCCATGCTTATAAAAATAACTTGAACTATATCTG
TTTGTATGTCGAGGGCGGCAATGAATCGGCGCTGCGGTTGTATGAGAAGA
ATGGGTACAGTGTGGTTGCATTCTCACCCCAAGCAGAAAGCTTTGCCGCG
GCGATTGGGCTGTACAAAGGGCCTTTTTCATCACGTCGATATTCATTTGC
GTACAAACGGTTGGCGGTGGGGTTTGGGACTGCTGGTGGTGCTGCTGGTG
CTGGTGCTGCTGCTGTCGGTGCTGCTGCTGCCGTTGGTGCAGGTGATAGG
GAGCCCGTGTCCGGGCGTGGTAGATTTGTTGTGGGTAGTGTTGGGGTTTT
GCAGCATCAGCAGCAGCAGCAACAACAACAGCAGCAGCCGCAGCCCCCGC
AGCTGGAGGGGGAAAGCTTATTGTCCGAACCAAACAAGCCGTTTCCGGCG
CGGTCGCCATCCTTGGTGATGCCTTTTTGA
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Synonyms
Publications