NO12G00790.1, NO12G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00790.1
Unique NameNO12G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1185
Alignment locationchr12:264660..266436 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:264660..266436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00790.1 vs.
Match: XP_005856041.1 (uroporphyrinogen 3 C-methyltransferase [Nannochloropsis gaditana CCMP526]; EKU20334.1 uroporphyrinogen 3 C-methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 392.1 bits (1006), Expect = 2.000e-105
Identity = 218/328 (66.46%), Postives = 251/328 (76.52%), Query Frame = 0 
Query:   78 LFLLLLGSSSTSITAFFLPPSSSQY------SPSSYLLRRSR-TTSTILQAFRNDSSSFGPSSLSPSFSPTG-KGEITLVGAGPGDPDLLTLAAIRALSTADIVVADRLIPPEMLALVTGTLKIAGKRPGCAEEAQQEIYRWVEEGVKEEKHVVRLKIGDPFLFGRGGEEVLKYRDALGVEPRLIPGVSSALAAPLLGSIPVTHRGVANQVYICTGFGKEGDRPYLAPYNPNQTAVFLMAVGRLGELSEQLVQTAGYPPFTPVAIVEQASTPRQRTVVGRVGTIAMYAEKVGVKAPAVIVVGEVVRVLLE-----EEGGRRRWRERGG 393
            LF LL   +  S    F+P + S +      +P    +   R  TST + AF ND S FGPSSL+PS  P+  +G ITLVGAGPGDPDLLTLAAIRA++TAD+VVADRLIPPEML LVTG LKIAGKRPGCA+ AQ+EIY+WV +G+   +HVVRLKIGDPFLFGRGGEEVL++R+ LGV+P +IPGVSSA AAPLL +IPVTHRGV+NQVY+CTGFGK GDRPYLAP+  NQTAVFLMAVGRL EL+ QL   AGYP  TPVAIVEQASTPRQRTVV  +  IA  AE+V V APAV+VVGEVVRVLLE     EEGGR    + GG
Sbjct:   38 LFPLLFALTHLSPGVAFVPATPSPFPCILSSTPHPLTIPTPRPATSTAVSAFLNDDSRFGPSSLTPSPGPSPPQGRITLVGAGPGDPDLLTLAAIRAMATADLVVADRLIPPEMLKLVTGNLKIAGKRPGCADAAQKEIYQWVRDGMAARQHVVRLKIGDPFLFGRGGEEVLEFREKLGVDPEIIPGVSSAFAAPLLAAIPVTHRGVSNQVYVCTGFGKGGDRPYLAPFYVNQTAVFLMAVGRLRELTRQLTSVAGYPEETPVAIVEQASTPRQRTVVATLDKIAAVAERVRVTAPAVVVVGEVVRVLLEEGEDGEEGGRVIEGKAGG 365
The following BLAST results are available for this feature:
BLAST of NO12G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856041.12.000e-10566.46uroporphyrinogen 3 C-methyltransferase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00790NO12G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00790.1NO12G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00790.1.cds1NO12G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00790.1.cds2NO12G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00790.1.cds3NO12G00790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00790.1 ID=NO12G00790.1|Name=NO12G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGGTACGCTACGCGCAAACTGGGCAGCAGGCAAGGCAGAGCGAGTGGTG
TGTGCGGTTTGACCAGAGTCTCCCCGCCCATCCATCAAAAGGAGTACCAG
CAGCACTTGCCCTCCCTCTTCCAACAACTAACACAGCCATTGCCCTGTCG
ACCAGGCGAGCAGCGCCACATCACCACCGACAATCCCACAGAACAATGGC
CACTACAACTACCGTCAGCACGGCCTCTTTCCTCTTTCTGCTCTTACTGG
GCAGCAGCAGCACCAGCATCACAGCTTTCTTCCTTCCCCCCTCCTCCTCC
CAATACTCCCCCTCCTCCTACCTCCTTCGACGCTCCCGAACCACCTCCAC
TATTCTCCAGGCCTTCCGCAACGACAGCAGTAGTTTCGGTCCTTCCTCCC
TCTCTCCCTCCTTCTCTCCCACAGGCAAGGGAGAGATCACGCTGGTGGGC
GCAGGCCCTGGTGATCCCGACCTCCTCACCCTCGCGGCTATCCGGGCCCT
GTCAACAGCTGATATCGTCGTGGCGGACCGACTTATACCTCCCGAGATGC
TGGCCTTGGTAACGGGTACGTTAAAAATAGCGGGCAAGCGCCCAGGCTGC
GCAGAGGAGGCGCAGCAAGAGATTTATCGATGGGTGGAGGAGGGTGTAAA
AGAGGAGAAGCACGTGGTACGACTCAAAATTGGCGACCCGTTTTTGTTTG
GAAGAGGAGGGGAGGAGGTGCTCAAGTATCGAGATGCTTTGGGGGTGGAG
CCACGATTGATTCCGGGGGTAAGCTCGGCATTGGCGGCGCCCTTACTCGG
ATCCATTCCCGTCACTCACCGAGGAGTGGCGAACCAGGTGTACATCTGCA
CGGGGTTCGGCAAGGAGGGAGACCGGCCTTACCTCGCTCCGTACAACCCG
AACCAAACTGCGGTGTTCTTGATGGCTGTGGGGAGGCTGGGCGAGCTGTC
GGAGCAGCTGGTGCAGACAGCTGGGTACCCTCCTTTCACACCTGTGGCGA
TCGTGGAGCAGGCGTCGACGCCGAGGCAAAGGACGGTGGTGGGGAGGGTG
GGCACGATAGCAATGTATGCGGAGAAAGTTGGAGTGAAGGCCCCGGCGGT
GATCGTGGTAGGGGAGGTGGTAAGGGTGTTGTTGGAGGAGGAGGGGGGGA
GGAGGAGGTGGAGAGAGAGGGGGGGAGGATTGTGA
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protein sequence of NO12G00790.1

>NO12G00790.1-protein ID=NO12G00790.1-protein|Name=NO12G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MVRYAQTGQQARQSEWCVRFDQSLPAHPSKGVPAALALPLPTTNTAIALS
TRRAAPHHHRQSHRTMATTTTVSTASFLFLLLLGSSSTSITAFFLPPSSS
QYSPSSYLLRRSRTTSTILQAFRNDSSSFGPSSLSPSFSPTGKGEITLVG
AGPGDPDLLTLAAIRALSTADIVVADRLIPPEMLALVTGTLKIAGKRPGC
AEEAQQEIYRWVEEGVKEEKHVVRLKIGDPFLFGRGGEEVLKYRDALGVE
PRLIPGVSSALAAPLLGSIPVTHRGVANQVYICTGFGKEGDRPYLAPYNP
NQTAVFLMAVGRLGELSEQLVQTAGYPPFTPVAIVEQASTPRQRTVVGRV
GTIAMYAEKVGVKAPAVIVVGEVVRVLLEEEGGRRRWRERGGGL*
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mRNA from alignment at chr12:264660..266436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00790.1 ID=NO12G00790.1|Name=NO12G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp|location=Sequence derived from alignment at chr12:264660..266436- (Nannochloropsis oceanica)
ATGGTACGCTACGCGCAAACTGGGTAGGTGCCGTTTAGTGTGGTAATGTG
GTCGTAGTAGTCATCGAAGCGACGCCTCATTGCACTAGGGGGCATATGCA
TCATATATTGCCATTGCGTGTACATTCGTCATATCTCGAGGTTTGCTTGG
CCGCAGCCGGTCATCGCCCCCATTTCTATTCAACCGCGCGTTCTTTTGGC
CACAAAACTCCCGCTTCACTCAAGTAACACGCGCTGGTATCACTTCTGTC
ACACGGACACAGGCAGCAGGCAAGGCAGAGCGAGTGGTGTGTGCGGTTTG
ACCAGAGTCTCCCCGCCCATCCATCAAAAGGAGTACCAGCAGCACTTGCC
CTCCCTCTTCCAACAACTAACACAGCCATTGCCCTGTCGACCAGGCGAGC
AGCGCCACATCACCACCGACAATCCCACAGGTAAGCACTCATTCTTAAGC
GGTAGCAACTCCGTGCTCTTCACATCCCTCCCCTCTCCATTCATTTGCGC
ACATCCGCATCTAAAGCAAACTGCCGCGGTCCCACCCTCCCGCGCACTCC
TCCGACCCCGCCTCCCTCTCTACCCATCAAAAAATCCAGCACAAATCAAC
CACCACCTTTTGAGTTCAGTAAGAACGATGCATGAGCGCCATCACCACAC
GTATTCCCCGCTCAACTTCCCTTCTCCTCGCGCGCTCTCTCTCACTGTTC
CTCTTAACATAGCTGTTGCTCTCGCTTCGCCTCATCTCCTCGACACCCTC
TCCCCGTCTACCACACCCGACACACACACACAGAACAATGGCCACTACAA
CTACCGTCAGCACGGCCTCTTTCCTCTTTCTGCTCTTACTGGGCAGCAGC
AGCACCAGCATCACAGCTTTCTTCCTTCCCCCCTCCTCCTCCCAATACTC
CCCCTCCTCCTACCTCCTTCGACGCTCCCGAACCACCTCCACTATTCTCC
AGGCCTTCCGCAACGACAGCAGTAGTTTCGGTCCTTCCTCCCTCTCTCCC
TCCTTCTCTCCCACAGGCAAGGGAGAGATCACGCTGGTGGGCGCAGGCCC
TGGTGATCCCGACCTCCTCACCCTCGCGGCTATCCGGGCCCTGTCAACAG
CTGATATCGTCGTGGCGGACCGACTTATACCTCCCGAGATGCTGGCCTTG
GTAACGGGTACGTTAAAAATAGCGGGCAAGCGCCCAGGCTGCGCAGAGGA
GGCGCAGCAAGAGATTTATCGATGGGTGGAGGAGGGTGTAAAAGAGGAGA
AGCACGTGGTACGACTCAAAATTGGCGACCCGTTTTTGTTTGGAAGAGGA
GGGGAGGAGGTGCTCAAGTATCGAGATGCTTTGGGGGTGGAGCCACGATT
GATTCCGGGGGTAAGCTCGGCATTGGCGGCGCCCTTACTCGGATCCATTC
CCGTCACTCACCGAGGAGTGGCGAACCAGGTGTACATCTGCACGGGGTTC
GGCAAGGAGGGAGACCGGCCTTACCTCGCTCCGTACAACCCGAACCAAAC
TGCGGTGTTCTTGATGGCTGTGGGGAGGCTGGGCGAGCTGTCGGAGCAGC
TGGTGCAGACAGCTGGGTACCCTCCTTTCACACCTGTGGCGATCGTGGAG
CAGGCGTCGACGCCGAGGCAAAGGACGGTGGTGGGGAGGGTGGGCACGAT
AGCAATGTATGCGGAGAAAGTTGGAGTGAAGGCCCCGGCGGTGATCGTGG
TAGGGGAGGTGGTAAGGGTGTTGTTGGAGGAGGAGGGGGGGAGGAGGAGG
TGGAGAGAGAGGGGGGGAGGATTGTGA
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Coding sequence (CDS) from alignment at chr12:264660..266436-

>NO12G00790.1 ID=NO12G00790.1|Name=NO12G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr12:264660..266436- (Nannochloropsis oceanica)
ATGGTACGCTACGCGCAAACTGGGCAGCAGGCAAGGCAGAGCGAGTGGTG
TGTGCGGTTTGACCAGAGTCTCCCCGCCCATCCATCAAAAGGAGTACCAG
CAGCACTTGCCCTCCCTCTTCCAACAACTAACACAGCCATTGCCCTGTCG
ACCAGGCGAGCAGCGCCACATCACCACCGACAATCCCACAGAACAATGGC
CACTACAACTACCGTCAGCACGGCCTCTTTCCTCTTTCTGCTCTTACTGG
GCAGCAGCAGCACCAGCATCACAGCTTTCTTCCTTCCCCCCTCCTCCTCC
CAATACTCCCCCTCCTCCTACCTCCTTCGACGCTCCCGAACCACCTCCAC
TATTCTCCAGGCCTTCCGCAACGACAGCAGTAGTTTCGGTCCTTCCTCCC
TCTCTCCCTCCTTCTCTCCCACAGGCAAGGGAGAGATCACGCTGGTGGGC
GCAGGCCCTGGTGATCCCGACCTCCTCACCCTCGCGGCTATCCGGGCCCT
GTCAACAGCTGATATCGTCGTGGCGGACCGACTTATACCTCCCGAGATGC
TGGCCTTGGTAACGGGTACGTTAAAAATAGCGGGCAAGCGCCCAGGCTGC
GCAGAGGAGGCGCAGCAAGAGATTTATCGATGGGTGGAGGAGGGTGTAAA
AGAGGAGAAGCACGTGGTACGACTCAAAATTGGCGACCCGTTTTTGTTTG
GAAGAGGAGGGGAGGAGGTGCTCAAGTATCGAGATGCTTTGGGGGTGGAG
CCACGATTGATTCCGGGGGTAAGCTCGGCATTGGCGGCGCCCTTACTCGG
ATCCATTCCCGTCACTCACCGAGGAGTGGCGAACCAGGTGTACATCTGCA
CGGGGTTCGGCAAGGAGGGAGACCGGCCTTACCTCGCTCCGTACAACCCG
AACCAAACTGCGGTGTTCTTGATGGCTGTGGGGAGGCTGGGCGAGCTGTC
GGAGCAGCTGGTGCAGACAGCTGGGTACCCTCCTTTCACACCTGTGGCGA
TCGTGGAGCAGGCGTCGACGCCGAGGCAAAGGACGGTGGTGGGGAGGGTG
GGCACGATAGCAATGTATGCGGAGAAAGTTGGAGTGAAGGCCCCGGCGGT
GATCGTGGTAGGGGAGGTGGTAAGGGTGTTGTTGGAGGAGGAGGGGGGGA
GGAGGAGGTGGAGAGAGAGGGGGGGAGGATTGTGA
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Synonyms
Publications