NO12G00770.1, NO12G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00770.1
Unique NameNO12G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2049
Alignment locationchr12:259809..262452 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:259809..262452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G00770.1 vs.
Match: EWM25946.1 (Alpha/beta hydrolase fold-1 [Nannochloropsis gaditana])

HSP 1 Score: 307.0 bits (785), Expect = 1.200e-79
Identity = 175/285 (61.40%), Postives = 199/285 (69.82%), Query Frame = 0 
Query:   43 SSTFSTPSATTCPPFRSRRLPTSTRLFASFSSTAAAPSPSNAYEEGFPHAF-EDVPREFLDEIEEAACRDMLKAMRSWDVPV--PTSLSSTGYVRATGVGPSSLASSPPSPSPPVLLLHGFDSSCLEYRRLHPLLSPHVDTFALDIMGWGFSQLRGITEFSAEAKRVYLYGFWKHVLKEKKMVLVGASLGGAAAVDFAHTYPEAVEKLVLIDAQVYIDGVGPMSSFPPPLAALGIKLLQSKPLRSYAGTLSYHNPSRYSTRDAMHIGRVHTLRPGWDQASVRYML 325
            +  FS+P    C P R    P+S  L  SFSS     SP        PHAF        +        R  L+       P   P+   +T   +     PSS  SS  S  PPVLLLHGFDSSCLEYRRLHPLLSP++D +A+D+MGWGFSQLRG+ +FSAEAKR YL+ FW HVLKE+ MVLVGASLGGAAAVDFAHTYPEAV+KLVLIDAQVYIDGVGPM+SFPPPLAALGI++LQSK LRSYAGTLSYH+   YSTRDAMHIGR+HT R GWD+ASVRYML
Sbjct:   24 TQAFSSP----CLPCRDPTFPSSPSL-PSFSSFCTVFSP--------PHAFVRPTASSSIQPYHPRHQRPTLQPCGHGIFPFLPPSRPPATSAPQGLPPLPSS-PSSTSSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYML 294
The following BLAST results are available for this feature:
BLAST of NO12G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25946.11.200e-7961.40Alpha/beta hydrolase fold-1 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00770NO12G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00770.1NO12G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00770.1.cds1NO12G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00770.1.cds2NO12G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00770.1.cds3NO12G00770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00770.1.cds4NO12G00770.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00770.1.cds5NO12G00770.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00770.1 ID=NO12G00770.1|Name=NO12G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
CGTGAAGGTCATAGTTGTGTGCTGACACGTTGTGAGGTTGGTGGAAAGAG
TAGAAAGAAGGGAGGAGATGGATGAGCGCTTGTGGTGAGTGCAGCGGCAA
GCCACGCCGGGTGTTGGGTTTCGGGTGACAGTTTGCATTGGCAAGCTTCA
CTGCCCAGCTAGGAACTACCCTACAGACCCATCTACTTCGATCTCGAAGA
GGATGGGTCTGAATAATATGATGGGTGAGACGCTTAGGACAGACATTAAG
GTCACTAAGCACAAAGCAAGCAACGAGGAGTTCTCTTGCTTGCCCTCGCG
AACTGGTCCGGTCCACAATCCGACCGACCTCCCCCCCTACAAGTATTATA
CTGCCACATTCGATTCATTCCAACTCCATGCAGGCACACAAAACACAGGT
TATAGTCATTCAGCGACGCTGCCATGAGGACATTCATGCCTGTACCGGTC
TTCCTCGTTTCCCTCGTCCTTCTCGCGTCCTGTTCCGCTTTCCAACTACA
CAGGAAATCAGGTCCAAGCCCGCCCTCGTTGCTGCCTTCCTCCGCCTTCT
CCTCCACTTTCTCCACCCCCTCCGCGACCACTTGCCCTCCCTTCCGATCA
CGGCGGCTACCAACCTCCACCCGCCTGTTTGCTTCCTTTTCCTCCACCGC
CGCCGCCCCGTCCCCCAGCAACGCATACGAGGAGGGCTTCCCGCATGCCT
TTGAAGACGTGCCACGGGAGTTTCTGGACGAAATCGAGGAAGCAGCTTGC
CGGGATATGCTCAAGGCCATGCGCTCTTGGGACGTGCCCGTACCCACCTC
CCTCTCTTCTACTGGCTACGTCCGTGCCACCGGCGTAGGCCCCTCCTCCC
TCGCCTCCTCGCCTCCTTCTCCCTCCCCGCCTGTCCTCCTCTTGCATGGT
TTTGACTCCTCGTGTTTGGAGTACCGGCGACTGCACCCTCTCCTCTCACC
TCATGTGGACACATTTGCCTTGGACATTATGGGCTGGGGCTTTTCCCAAT
TACGAGGAATTACGGAATTCTCCGCTGAGGCAAAGAGGGTGTATTTGTAC
GGGTTCTGGAAGCACGTCCTCAAGGAAAAGAAAATGGTCTTGGTAGGCGC
CTCGCTAGGGGGAGCCGCCGCGGTTGATTTCGCGCACACCTACCCGGAAG
CGGTGGAGAAACTGGTGCTCATCGACGCACAGGTGTACATCGACGGCGTT
GGGCCCATGTCCTCCTTCCCTCCCCCTCTCGCCGCCCTCGGCATCAAACT
CCTGCAAAGCAAGCCCCTGCGTTCCTACGCCGGCACCCTCTCCTACCACA
ACCCTTCCCGGTACTCCACAAGGGACGCCATGCACATCGGGCGGGTCCAC
ACGCTGCGTCCTGGGTGGGACCAGGCCTCGGTGCGGTATATGCTCAGCGG
CGGCTACACAACAAGCAACAAAATCACCAGCCTCTCCCCCCACATCGAAA
CCCTCATCCTCTGGGGCAAGGAAGACAAAATCCTCGAGCCCAAGCTTTAC
GCGGAGAAATTCATCGAGGATTTGGGGACAACCCGGGCCCAATTAAAGTT
TATTGAAGAATGCGGACATGTCTGTCACCTGGAGAAGCCCTTGTTGGCCG
CTGAGGAGATCGTTCAGTTTGTGAAAGGAGGGAGGGAGGGAGGGGGAGGG
TGGGTGCAGGCCATCGGGCCAGCGTACGGCGAGGAGAGGAGGGAGGGAGA
GAAGGAGGGGAGGGGTTGGTTGGCAGAGATGATGGCGAGCTTTAGGTCCA
CAGGCGGGGAGGGAGGGAAAGATGGAGGGGAGGAAGGAAGGAGGGAGGAG
CCCTGTGGAACATGTCACGATGAGGAGGTGGTAGATTGCAGCAACTGTGA
TGGGATTGGAAGCTACACGACTTATGGACGGACAGTGCAGTGCAATGTCT
GCAAAGGCACAGGGTTGATGATCTGCCGGGACTGCTATGACGGTGAGGCG
GAAGATATCGAGGGAATACGACTGACGGTACGAGAAGCAGCAGTGCGCTT
GGGTAGGATACCAGTCTTGTCCTCCCTCTCGTCCTCCACGCACGAGTAG
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protein sequence of NO12G00770.1

>NO12G00770.1-protein ID=NO12G00770.1-protein|Name=NO12G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MRTFMPVPVFLVSLVLLASCSAFQLHRKSGPSPPSLLPSSAFSSTFSTPS
ATTCPPFRSRRLPTSTRLFASFSSTAAAPSPSNAYEEGFPHAFEDVPREF
LDEIEEAACRDMLKAMRSWDVPVPTSLSSTGYVRATGVGPSSLASSPPSP
SPPVLLLHGFDSSCLEYRRLHPLLSPHVDTFALDIMGWGFSQLRGITEFS
AEAKRVYLYGFWKHVLKEKKMVLVGASLGGAAAVDFAHTYPEAVEKLVLI
DAQVYIDGVGPMSSFPPPLAALGIKLLQSKPLRSYAGTLSYHNPSRYSTR
DAMHIGRVHTLRPGWDQASVRYMLSGGYTTSNKITSLSPHIETLILWGKE
DKILEPKLYAEKFIEDLGTTRAQLKFIEECGHVCHLEKPLLAAEEIVQFV
KGGREGGGGWVQAIGPAYGEERREGEKEGRGWLAEMMASFRSTGGEGGKD
GGEEGRREEPCGTCHDEEVVDCSNCDGIGSYTTYGRTVQCNVCKGTGLMI
CRDCYDGEAEDIEGIRLTVREAAVRLGRIPVLSSLSSSTHE*
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mRNA from alignment at chr12:259809..262452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00770.1 ID=NO12G00770.1|Name=NO12G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2644bp|location=Sequence derived from alignment at chr12:259809..262452+ (Nannochloropsis oceanica)
CGTGAAGGTCATAGTTGTGTGCTGACACGTTGTGAGGTTGGTGGAAAGAG
TAGAAAGAAGGGAGGAGATGGATGAGCGCTTGTGGTGAGTGCAGCGGCAA
GCCACGCCGGGTGTTGGGTTTCGGGTGACAGTTTGCATTGGCAAGCTTCA
CTGCCCAGCTAGGAACTACCCTACAGACCCATCTACTTCGATCTCGAAGA
GGATGGGTCTGAATAATATGATGGGTGAGACGCTTAGGACAGACATTAAG
GTCACTAAGCACAAAGCAAGCAACGAGGAGTTCTCTTGCTTGCCCTCGCG
AACTGGTCCGGTCCACAATCCGACCGACCTCCCCCCCTACAAGTATTATA
CTGCCACATTCGATTCATTCCAACTCCATGCAGGCACACAAAACACAGGT
TATAGTCATTCAGCGACGCTGCCATGAGGACATTCATGCCTGTACCGGTC
TTCCTCGTTTCCCTCGTCCTTCTCGCGTCCTGTTCCGCTTTCCAACTACA
CAGGAAATCAGGTCCAAGCCCGCCCTCGTTGCTGCCTTCCTCCGCCTTCT
CCTCCACTTTCTCCACCCCCTCCGCGACCACTTGCCCTCCCTTCCGATCA
CGGCGGCTACCAACCTCCACCCGCCTGTTTGCTTCCTTTTCCTCCACCGC
CGCCGCCCCGTCCCCCAGCAACGCATACGAGGAGGGCTTCCCGCATGCCT
TTGAAGACGTGCCACGGGAGTTTCTGGACGAAATCGAGGAAGCAGCTTGC
CGGGATATGCTCAAGGGTAAATAAAAAAATTCAGCATCCCTTATCCTCCT
TTTCTTCCTCTCTTTCGCCCTTTCATATCATTTCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTACCTGTCACAGCCATGCGCTCTTGGGACGTGCCC
GTACCCACCTCCCTCTCTTCTACTGGCTACGTCCGTGCCACCGGCGTAGG
CCCCTCCTCCCTCGCCTCCTCGCCTCCTTCTCCCTCCCCGCCTGTCCTCC
TCTTGCATGGTTTTGACTCCTCGTGTTTGGAGTACCGGCGACTGCACCCT
CTCCTCTCACCTCATGTGGACACATTTGCCTTGGACATTATGGGCTGGGG
CTTTTCCCAATTACGAGGAATTACGGAATTCTCCGCTGAGGCAAAGAGGG
TGTATTTGTACGGGTTCTGGAAGCACGTCCTCAAGGAAAAGAAAATGGTC
TTGGTAGGCGCCTCGCTAGGGGGAGCCGCCGCGGTTGATTTCGCGCACAC
CTACCCGGAAGCGGTGGAGAAACTGGTGCTCATCGACGCACAGGTAGGGA
CAGGGATAAAGTATACTATGATTGCTTGTTCATGCTTTAGTACTTTCACC
CTTTTGCCTTCCCTCCCTTGTGCCTGCCGTCTGCCTCCCCCCTCCTTCCC
TCTCATCCCTCCCACCCCTCCTCTCTCCCACCTTCCCCCCCTCCCTAGGT
GTACATCGACGGCGTTGGGCCCATGTCCTCCTTCCCTCCCCCTCTCGCCG
CCCTCGGCATCAAACTCCTGCAAAGCAAGCCCCTGCGTTCCTACGCCGGC
ACCCTCTCCTACCACAACCCTTCCCGGTACTCCACAAGGGACGCCATGCA
CATCGGGCGGGTCCACACGCTGCGTCCTGGGTGGGACCAGGCCTCGGTGC
GGTATATGCTCAGGTATGCCTTCCTTCCCTCCCTCTTTCCCTTCCTTCCT
CCTTCCTTCCTGCCCCTCCCTCCCTCACGTGCGAGACATGCTCAGGTACG
TCCTCTTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTGATGTTTC
CTCCACTCAGTGGCAACGAACTCCATCGAACCCCGTTTAGGTCATCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCCCCCTCCCGCCCACCA
CCAGCGGCGGCTACACAACAAGCAACAAAATCACCAGCCTCTCCCCCCAC
ATCGAAACCCTCATCCTCTGGGGCAAGGAAGACAAAATCCTCGAGCCCAA
GCTTTACGCGGAGAAATTCATCGAGGATTTGGGGACAACCCGGGCCCAAT
TAAAGTTTATTGAAGAATGCGGACATGTCTGTCACCTGGAGAAGCCCTTG
TTGGCCGCTGAGGAGATCGTTCAGTTTGTGAAAGGAGGGAGGGAGGGAGG
GGGAGGGTGGGTGCAGGCCATCGGGCCAGCGTACGGCGAGGAGAGGAGGG
AGGGAGAGAAGGAGGGGAGGGGTTGGTTGGCAGAGATGATGGCGAGCTTT
AGGTCCACAGGCGGGGAGGGAGGGAAAGATGGAGGGGAGGAAGGAAGGAG
GGAGGAGCCCTGTGGAACATGTCACGATGAGGAGGTGGTAGATTGCAGCA
ACTGTGATGGGATTGGAAGCTACACGACTTATGGACGGACAGTGCAGTGC
AATGGTACGTGCTCGGCCGCTTGCCCGCCCTCCTTCCCTCCCCCCTCCCT
CCCTCCTTCCCTTATTCAACTCCTCCTTTCCTCCCTCCTCAGTCTGCAAA
GGCACAGGGTTGATGATCTGCCGGGACTGCTATGACGGTGAGGCGGAAGA
TATCGAGGGAATACGACTGACGGTACGAGAAGCAGCAGTGCGCTTGGGTA
GGATACCAGTCTTGTCCTCCCTCTCGTCCTCCACGCACGAGTAG
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Coding sequence (CDS) from alignment at chr12:259809..262452+

>NO12G00770.1 ID=NO12G00770.1|Name=NO12G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr12:259809..262452+ (Nannochloropsis oceanica)
ATGAGGACATTCATGCCTGTACCGGTCTTCCTCGTTTCCCTCGTCCTTCT
CGCGTCCTGTTCCGCTTTCCAACTACACAGGAAATCAGGTCCAAGCCCGC
CCTCGTTGCTGCCTTCCTCCGCCTTCTCCTCCACTTTCTCCACCCCCTCC
GCGACCACTTGCCCTCCCTTCCGATCACGGCGGCTACCAACCTCCACCCG
CCTGTTTGCTTCCTTTTCCTCCACCGCCGCCGCCCCGTCCCCCAGCAACG
CATACGAGGAGGGCTTCCCGCATGCCTTTGAAGACGTGCCACGGGAGTTT
CTGGACGAAATCGAGGAAGCAGCTTGCCGGGATATGCTCAAGGCCATGCG
CTCTTGGGACGTGCCCGTACCCACCTCCCTCTCTTCTACTGGCTACGTCC
GTGCCACCGGCGTAGGCCCCTCCTCCCTCGCCTCCTCGCCTCCTTCTCCC
TCCCCGCCTGTCCTCCTCTTGCATGGTTTTGACTCCTCGTGTTTGGAGTA
CCGGCGACTGCACCCTCTCCTCTCACCTCATGTGGACACATTTGCCTTGG
ACATTATGGGCTGGGGCTTTTCCCAATTACGAGGAATTACGGAATTCTCC
GCTGAGGCAAAGAGGGTGTATTTGTACGGGTTCTGGAAGCACGTCCTCAA
GGAAAAGAAAATGGTCTTGGTAGGCGCCTCGCTAGGGGGAGCCGCCGCGG
TTGATTTCGCGCACACCTACCCGGAAGCGGTGGAGAAACTGGTGCTCATC
GACGCACAGGTGTACATCGACGGCGTTGGGCCCATGTCCTCCTTCCCTCC
CCCTCTCGCCGCCCTCGGCATCAAACTCCTGCAAAGCAAGCCCCTGCGTT
CCTACGCCGGCACCCTCTCCTACCACAACCCTTCCCGGTACTCCACAAGG
GACGCCATGCACATCGGGCGGGTCCACACGCTGCGTCCTGGGTGGGACCA
GGCCTCGGTGCGGTATATGCTCAGCGGCGGCTACACAACAAGCAACAAAA
TCACCAGCCTCTCCCCCCACATCGAAACCCTCATCCTCTGGGGCAAGGAA
GACAAAATCCTCGAGCCCAAGCTTTACGCGGAGAAATTCATCGAGGATTT
GGGGACAACCCGGGCCCAATTAAAGTTTATTGAAGAATGCGGACATGTCT
GTCACCTGGAGAAGCCCTTGTTGGCCGCTGAGGAGATCGTTCAGTTTGTG
AAAGGAGGGAGGGAGGGAGGGGGAGGGTGGGTGCAGGCCATCGGGCCAGC
GTACGGCGAGGAGAGGAGGGAGGGAGAGAAGGAGGGGAGGGGTTGGTTGG
CAGAGATGATGGCGAGCTTTAGGTCCACAGGCGGGGAGGGAGGGAAAGAT
GGAGGGGAGGAAGGAAGGAGGGAGGAGCCCTGTGGAACATGTCACGATGA
GGAGGTGGTAGATTGCAGCAACTGTGATGGGATTGGAAGCTACACGACTT
ATGGACGGACAGTGCAGTGCAATGTCTGCAAAGGCACAGGGTTGATGATC
TGCCGGGACTGCTATGACGGTGAGGCGGAAGATATCGAGGGAATACGACT
GACGGTACGAGAAGCAGCAGTGCGCTTGGGTAGGATACCAGTCTTGTCCT
CCCTCTCGTCCTCCACGCACGAGTAG
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Synonyms
Publications