NO12G00760.1, NO12G00760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00760.1
Unique NameNO12G00760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length907
Alignment locationchr12:258538..260118 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:258538..260118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00760NO12G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00760.1NO12G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00760.1.cds1NO12G00760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00760.1.cds2NO12G00760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00760.1.cds3NO12G00760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00760.1.cds4NO12G00760.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00760.1 ID=NO12G00760.1|Name=NO12G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
CGGACCAGTTCGCGAGGGCAAGCAAGAGAACTCCTCGTTGCTTGCTTTGT
GCTTAGTGACCTTAATGTCTGTCCTAAGCGTCTCACCCATCATATTATTC
AGACCCATCCTCTTCGAGATCGAAGTAGATGGGTCTGTAGGGTAGTTCCT
AGCTGGGCAGTGAAGCTTGCCAATGCAAACTGTCACCCGAAACCCAACAC
CCGGCGTGGCTTGCCGCTGCACTCACCACAAGCGCTCATCCATCTCCTCC
CTTCTTTCTACTCTTTCCACCAACCTCACAACGTGTCAGCACACAACTAT
GACCTTCACGCGCGCGTGGCTCAACGCATTGGAAACGATGCCCAGGTCCC
AGGCCATTATGGGTGCGCTTGGTGTCAGCTTCGTGGCTAGTGGCGTCCTG
TATGTGGGCATCAACCGTGGACATAAGCTGCCAAGGACTTTTTCTCCCGA
GTGGCGCGCCTTGACAGCCGAATACCACAAGCACAACAACGCTGATCCCA
TCTTCTACCATCCCAAGTAAGCGCCCTCTCCGGTCATCACGAGCTGCATC
GTCATGTCGTCATGTTGATGGAACGGGGGCTAGGAAACAGGAGGTGGAGG
TGAAGCAGGAGCGAAATACAAATGGCAGTTTTGAATGGACGGTGGAAGGA
CGGAGGGGAAGGAGGACACGACGATGGATCGACAGCGTCTGGTCGTGTAG
TGGATATGTGATGATGAGCAGGAATGTGGCGGACAGTGGTATGTAGAGAG
AACATGGGTGCATCATAAAGACAGTCGCAACATCCCCCCGAAAAAAAACA
AAAAGAGAGTTTGGAGAATTTGAAGAAGAAGGAAAGCAACAAACAAGCGG
GCTTACATAACTACCCTGTGAGTAACGCGGAGAACGCGGATACTGGCCCT
GAAGGAG
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protein sequence of NO12G00760.1

>NO12G00760.1-protein ID=NO12G00760.1-protein|Name=NO12G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MQTVTRNPTPGVACRCTHHKRSSISSLLSTLSTNLTTCQHTTMTFTRAWL
NALETMPRSQAIMGALGVSFVASGVLYVGINRGHKLPRTFSPEWRALTAE
YHKHNNADPIFYHPK*
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mRNA from alignment at chr12:258538..260118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00760.1 ID=NO12G00760.1|Name=NO12G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp|location=Sequence derived from alignment at chr12:258538..260118- (Nannochloropsis oceanica)
CGGACCAGTTCGCGAGGGCAAGCAAGAGAACTCCTCGTTGCTTGCTTTGT GCTTAGTGACCTTAATGTCTGTCCTAAGCGTCTCACCCATCATATTATTC AGACCCATCCTCTTCGAGATCGAAGTAGATGGGTCTGTAGGGTAGTTCCT AGCTGGGCAGTGAAGCTTGCCAATGCAAACTGTCACCCGAAACCCAACAC CCGGCGTGGCTTGCCGCTGCACTCACCACAAGCGCTCATCCATCTCCTCC CTTCTTTCTACTCTTTCCACCAACCTCACAACGTGTCAGCACACAACTAT GACCTTCACGCGCGCGTGGCTCAACGCATTGGAAACGATGCCCAGGTCCC AGGTGAGTCGACTTGACGGGAACTGGATGACGATGGAGAGGCGGAGGAGC TGGATGAGGAGGAGGATTAACACATGCGATCGCTACCACCATACCCACGT ACCCTTACAGGCCATTATGGGTGCGCTTGGTGTCAGCTTCGTGGCTAGTG GCGTCCTGTATGTGGGCATCAACCGTGGACGTGAGTAAGGAGAGGGAGGG GAAAGAGGGAGAGCGCGATTGATATGTTTTCTTATGACTTGTATTGACAG GGCGCGTTGTATGCATGCCCCAGGTCTCCATTTCGATGGGCTTAAGATGC TAAGATGCTAGATGCTGGAGAGGAATCAGGGAGGATGGGCGTACGGAAAG GCAGTGGGAGGAAAGAATGTGAAGGAGAACAAATCTTCCGAGGACATGAA TATTGCACTTTGTTGACCAGTCATACACCACTATATCTCTCGCTTCCTCC CTCATTTCCTCCCTCCTGCTGTTCAAACCCACAGATAAGCTGCCAAGGAC TTTTTCTCCCGAGTGGCGCGCCTTGACAGCCGAATACCACAAGCACAACA ACGCGTACGTGCGAGGGAACGGAGAACGTGGGAGGGATGGAGGGAGGGAG GGCGAGTAAACGGGAAGGGCGAATGAGTGGGCGATAAATGTACAATCGGT AGAATGGTTATGCTTAGGGATGTTACGCTGTCTCAGTATCATTTGCTTGA TAAGTTCGGTGTGATCTGTGAGCCACCCTCATTCTTTTTTCACATCGTAT CGGCTCTCCAACTCACTCTCCTTCCCTCCCTCCCTTCCATCCTCTCGCCT GCTTTCTTGTACCCAGTGATCCCATCTTCTACCATCCCAAGTAAGCGCCC TCTCCGGTCATCACGAGCTGCATCGTCATGTCGTCATGTTGATGGAACGG GGGCTAGGAAACAGGAGGTGGAGGTGAAGCAGGAGCGAAATACAAATGGC AGTTTTGAATGGACGGTGGAAGGACGGAGGGGAAGGAGGACACGACGATG GATCGACAGCGTCTGGTCGTGTAGTGGATATGTGATGATGAGCAGGAATG TGGCGGACAGTGGTATGTAGAGAGAACATGGGTGCATCATAAAGACAGTC GCAACATCCCCCCGAAAAAAAACAAAAAGAGAGTTTGGAGAATTTGAAGA AGAAGGAAAGCAACAAACAAGCGGGCTTACATAACTACCCTGTGAGTAAC GCGGAGAACGCGGATACTGGCCCTGAAGGAG
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Coding sequence (CDS) from alignment at chr12:258538..260118-

>NO12G00760.1 ID=NO12G00760.1|Name=NO12G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at chr12:258538..260118- (Nannochloropsis oceanica)
ATGCAAACTGTCACCCGAAACCCAACACCCGGCGTGGCTTGCCGCTGCAC
TCACCACAAGCGCTCATCCATCTCCTCCCTTCTTTCTACTCTTTCCACCA
ACCTCACAACGTGTCAGCACACAACTATGACCTTCACGCGCGCGTGGCTC
AACGCATTGGAAACGATGCCCAGGTCCCAGGCCATTATGGGTGCGCTTGG
TGTCAGCTTCGTGGCTAGTGGCGTCCTGTATGTGGGCATCAACCGTGGAC
ATAAGCTGCCAAGGACTTTTTCTCCCGAGTGGCGCGCCTTGACAGCCGAA
TACCACAAGCACAACAACGCTGATCCCATCTTCTACCATCCCAAGTAA
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Synonyms
Publications