|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr12 | genome | chr12:238070..240986 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00680.1 vs.
Match: EWM25951.1 (coproporphyrinogen iii oxidase chloroplast precursor [Nannochloropsis gaditana]) HSP 1 Score: 716.8 bits (1849), Expect = 3.800e-203 Identity = 343/409 (83.86%), Postives = 375/409 (91.69%), Query Frame = 0
Query: 6 ATATTAAAVLLLALPSTSNALASSARPRAMTTGYLHQPMASVGGSRRLNALAMARRTAHLYQRSVVAMSAAAPTKKEETGIGWNSHKPVTEVPESLVRGVEGNESMRRRFEKACREAQLAICKAVEECDGGAKFHSDAWIRADGGGGISMVLGDGKVWEKAGCNLSVVYGSMPQEALQAATERGVDRAKGMKPGERVPFFACGLSSVMHPRNPHCPTMHFNYRYFETEGGAWWFGGGMDITPSYLDTDDMKHFHGTLKEVCDKHDEGYYPKFKKWADEYFLIKHRGETRGLGGVFFDDQNDKSPDEHFAFSEEMLNTVTKAYLPIIEKHKNDAFTEEQKKWQQIRRGRYTEFNLVYDRGTVFGLKTGGRIESILMSLPETARWEYDHHPAEGSPEAEIMDAFKNAREWV 415
A A A++LLL +++A S+ARPR T+GY+HQP+A+VGGSRRL+A+AMAR +A Y+R V AM+A APTK+ IGW+SHK V VPESLVRGVEGNESMRRRFEKACREAQ+AICKAVE+CDGGAKFHSDAW+RADGGGGISMVL DGKVWEKAGCNLSVVYGSMPQEALQAATERGVDRAKG+KPGERVPFFACGLSSVMHPRNPHCPTMHFNYRYFETEGGAWWFGGGMDITPSYL+T+DM HFHGTLK VCDKHD YYPKFKKWADEYFLIKHRGETRGLGG+FFDDQNDKSPD+HFAFSEE+L TVT+AYLPIIEKHK+DA+TEE+KKWQQIRRGRYTEFNLVYDRGTVFGLKTGGRIESILMSLPETARWEYDH P EGSPEAEIM+AFK+ REWV
Sbjct: 3 ALAAAVASLLLLLSSGSTDAFTSAARPRVSTSGYIHQPIANVGGSRRLDAVAMAR-SAPCYRRRV-AMAAPAPTKEAGPSIGWDSHKAVDSVPESLVRGVEGNESMRRRFEKACREAQIAICKAVEDCDGGAKFHSDAWVRADGGGGISMVLKDGKVWEKAGCNLSVVYGSMPQEALQAATERGVDRAKGLKPGERVPFFACGLSSVMHPRNPHCPTMHFNYRYFETEGGAWWFGGGMDITPSYLNTEDMTHFHGTLKRVCDKHDAAYYPKFKKWADEYFLIKHRGETRGLGGIFFDDQNDKSPDQHFAFSEELLQTVTEAYLPIIEKHKDDAYTEEEKKWQQIRRGRYTEFNLVYDRGTVFGLKTGGRIESILMSLPETARWEYDHRPVEGSPEAEIMEAFKSPREWV 409
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00680.1 ID=NO12G00680.1|Name=NO12G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2088bp
TAGCATGCATATGTCTCGTGCCCCCGCCCTCCGTCGCACAGGGACCCACT
CCCACATGGTACTTGTTTCCCGCCTGCAAGGCCATTACTACGAGATATCC
TTGAATGTGACCATTCCCTCTACCTTTTTGTGATTCTTTTCATGTCTGTG
TGACCATTGCTAGCCGTGGAAAACCAAAGTATCTATCCTGTTGCACATGT
TGCAGCATCCTGCCCTTCAAGTGCTCCATATACTGCGCCCCCTTCTCTTC
CATTTTGCTTTGTCCCCCCATGCAGTTACGACCAACGACGCTCCTTACCA
CCCTCACCATTACTGTAATTTCTTCCTTCTCATCTTATAGGTCAAGCGAG
ACCCCTTAAAAAAATGCGTGCGAGCCTCGCGACGGCCACGACGGCCGCAG
CCGTGCTGCTCCTAGCACTTCCGAGCACGTCCAACGCCCTCGCTTCCTCC
GCCCGTCCCCGTGCCATGACAACCGGATACCTTCACCAACCCATGGCAAG
CGTGGGGGGCAGCCGCCGCTTGAATGCCTTGGCAATGGCCCGTCGCACCG
CTCACTTGTACCAACGCAGCGTCGTGGCCATGTCAGCCGCCGCCCCCACC
AAGAAGGAAGAGACGGGCATCGGGTGGAACTCACATAAGCCCGTGACTGA
AGTGCCCGAATCCTTGGTCCGTGGCGTGGAAGGAAATGAGAGCATGCGTC
GCCGGTTTGAGAAGGCCTGCCGGGAGGCGCAGTTGGCCATCTGCAAGGCC
GTGGAAGAATGCGACGGGGGTGCCAAGTTCCATTCCGACGCCTGGATTCG
TGCCGATGGCGGGGGAGGGATATCAATGGTCCTCGGTGATGGGAAGGTCT
GGGAGAAGGCAGGTTGTAACCTGTCGGTGGTGTATGGGAGCATGCCTCAG
GAGGCGCTGCAGGCGGCGACGGAGAGGGGGGTAGATAGGGCGAAGGGGAT
GAAGCCGGGCGAGCGGGTGCCTTTCTTTGCCTGCGGTTTGAGCTCCGTCA
TGCACCCTAGGAACCCGCACTGTCCGACCATGCACTTCAACTACCGTTAC
TTCGAGACAGAGGGCGGGGCTTGGTGGTTCGGCGGGGGCATGGACATAAC
TCCCTCCTACCTGGACACCGACGACATGAAGCATTTCCACGGCACCTTGA
AGGAAGTGTGCGACAAGCACGACGAGGGGTATTACCCCAAATTTAAAAAA
TGGGCCGACGAATATTTTTTGATCAAGCACAGGGGCGAGACGCGCGGCTT
GGGTGGTGTTTTTTTCGACGACCAGAACGATAAGTCTCCTGATGAGCATT
TCGCCTTTTCGGAGGAGATGCTGAATACGGTGACTAAGGCGTATTTGCCC
ATCATCGAGAAGCATAAGAACGATGCCTTCACCGAGGAACAGAAGAAGTG
GCAGCAGATCCGGCGTGGCCGTTACACGGAGTTTAATTTGGTGTATGACA
GAGGGACGGTGTTCGGGTTAAAGACGGGAGGGAGGATTGAGAGTATCCTC
ATGTCGCTGCCGGAGACGGCTCGATGGGAGTATGACCACCACCCGGCGGA
AGGGAGCCCAGAGGCGGAGATCATGGATGCGTTTAAGAACGCGAGGGAAT
GGGTTTGAGGAGGAGGGAGGGAGGAAGGGAGGAAGGGAGGGAGCAGAGGA
GCGTTGTGGTGAGGGAGGAGAATGGGATAACAACGTTTGGAGAAAAGTTC
GATGCGCCTGAAGAGAGGATTCGAAAGGGCTCTTGATATGGTTACGCAGG
ATAAAGGAGGAGAAGGAGGAGAAGGAGAAGGAGGAGGATAGGGGGCGTGA
AGGCGCCAAGAAAGAACAACAAGCACAAAGATCAGCTCCAACAACAAACT
CAAGCACAACTACAAAGAAGAAAAGGGAAATAACGATCCTGAAGGAGGCA
GCATCACACGGCCCAAATCACGTAGATCACATTCAAATAACGAATTCACA
GCCTTCTCCTCTTTCGATCTTCTTCTGCGCACTCTCTGGATTGAACGACC
GCTATCTCTCGCCAGCTGTTCGAGGTAATGCTGTTCGTTGTACGACCCGT
CGAAGAGACCGACGATGAGAAATAAGGCACTGACGCAT back to topprotein sequence of NO12G00680.1 >NO12G00680.1-protein ID=NO12G00680.1-protein|Name=NO12G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MRASLATATTAAAVLLLALPSTSNALASSARPRAMTTGYLHQPMASVGGS
RRLNALAMARRTAHLYQRSVVAMSAAAPTKKEETGIGWNSHKPVTEVPES
LVRGVEGNESMRRRFEKACREAQLAICKAVEECDGGAKFHSDAWIRADGG
GGISMVLGDGKVWEKAGCNLSVVYGSMPQEALQAATERGVDRAKGMKPGE
RVPFFACGLSSVMHPRNPHCPTMHFNYRYFETEGGAWWFGGGMDITPSYL
DTDDMKHFHGTLKEVCDKHDEGYYPKFKKWADEYFLIKHRGETRGLGGVF
FDDQNDKSPDEHFAFSEEMLNTVTKAYLPIIEKHKNDAFTEEQKKWQQIR
RGRYTEFNLVYDRGTVFGLKTGGRIESILMSLPETARWEYDHHPAEGSPE
AEIMDAFKNAREWV* back to topmRNA from alignment at chr12:238070..240986- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00680.1 ID=NO12G00680.1|Name=NO12G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2917bp|location=Sequence derived from alignment at chr12:238070..240986- (Nannochloropsis oceanica)
TAGCATGCATATGTCTCGTGCCCCCGCCCTCCGTCGCACAGGGACCCACT
CCCACATGGTACTTGTTTCCCGCCTGCAAGGCCATTACTACGAGATATCC
TTGAATGTGACCATTCCCTCTACCTTTTTGTGATTCTTTTCATGTCTGTG
TGACCATTGCTAGCCGTGGAAAACCAAAGTATCTATCCTGTTGCACATGT
TGCAGCATCCTGCCCTTCAAGTGCTCCATATACTGCGCCCCCTTCTCTTC
CATTTTGCTTTGTCCCCCCATGCAGTTACGACCAACGACGCTCCTTACCA
CCCTCACCATTACTGTAATTTCTTCCTTCTCATCTTATAGGTCAAGCGAG
ACCCCTTAAAAAAATGCGTGCGAGCCTCGCGACGGCCACGACGGCCGCAG
CCGTGCTGCTCCTAGCACTTCCGAGCACGTCCAACGCCCTCGCTTCCTCC
GCCCGTCCCCGTGCCATGACAACCGGATACCTTCACCAACCCATGGCAAG
CGTGGGGGGCAGCCGCCGCTTGAATGCCTTGGCAATGGCCCGTCGCACCG
CTCACTTGTACCAACGCAGCGTCGTGGCCATGTCAGCCGCCGCCCCCACC
AAGAAGGAAGAGACGGGCATCGGGTGGAACTCACATAAGCCCGTGACTGA
AGTGCCCGAATCCTTGGTCCGTGGCGTGGAAGGAAATGAGAGCATGCGTC
GCCGGTTTGAGAAGGCCTGCCGGGAGGCGCAGGTAGGGAGAGAGGAAGGG
AGGGAGGGAGGGAGGAGGAAACCATATGTTGCAGCAATGGGGGGGTATAT
GCATGTTCGGGGGCAAACCACCCACGAGAGGCAATACACAGACACATCAG
ACCATCAGTCCATCCACCTTCCCCGTGCAATCTTTTACTCAAGCACACTT
CACCGACGAGGTCTCTACCTCTGAAGTCGTCGAGGAAAGCGACAGAAGGG
CACTGGGTTTCTCCGTCCCTCCCGATTTAACGCCCTGCCGTTTCGACACA
TGCACAACTCACGCTTTCACTCCTCTCATTCATTCGCCTGTCCTTCCCCC
CCCCTTCCCCTTCTGTCACCTTCCGTTCTCGTCAAAAGTTGGCCATCTGC
AAGGCCGTGGAAGAATGCGACGGGGGTGCCAAGTTCCATTCCGACGCCTG
GATTCGTGCCGATGGCGGGGGAGGGATATCAATGGTCCTCGGTGATGGGA
AGGTCTGGGAGAAGGCAGGTTGTAACCTGTCGGTGGTGTATGGGAGCATG
CCTCAGGAGGCGCTGCAGGCGGCGACGGAGAGGGGGGTAGATAGGGCGAA
GGGGATGAAGCCGGGTGAGTGCCGAGAGAGAGGGAGGGAGGGAATGAGTA
CCGATGTTGGCGTGTGAGCATAAAGAGAGCTAAGCAACTGCACGTCTGTG
GGGAGGGGATATATGTGGGGGGATGTACGCATGGGTGTGGGCGGCTTTTA
CCGGCCCATTCGCAATCTTTTTCTCATGCATTAATGCGGTCTTTTCTCTA
TGCCAATACAATACACACTCAAAGATATAAATATGGGTAGCACGACAAAC
ACCCACTTACTAATACTCACTAACACACACAAACAGGCGAGCGGGTGCCT
TTCTTTGCCTGCGGTTTGAGCTCCGTCATGCACCCTAGGGTAGGTACATA
TCAAATCAAACCAAAGGAGGGAGGAGAGGAGGCAGAGAGGGATGGAGGAT
GAAGCTGGTAATGCCATTGGAAAAGGGTTGACGCCCATGTAATTTGTGTC
TTCAGTGTTGACTGCTGAAACCGGAAACAACATTCTGGGCTAACCTCACC
GATTTCTTGCCCCCTCCCTCCCTCCCTCCCTTCTTCCCAGAACCCGCACT
GTCCGACCATGCACTTCAACTACCGTTACTTCGAGACAGAGGGCGGGGCT
TGGTGGTTCGGCGGGGGCATGGACATAACTCCCTCCTACCTGGACACCGA
CGACATGAAGCATTTCCACGGCACCTTGAAGGAAGTGTGCGACAAGCACG
ACGAGGGGTATTACCCCAAATTTAAAAAATGGGCCGACGAATATTTTTTG
ATCAAGCACAGGGGCGAGACGCGCGGCTTGGGTGGTGTTTTTTTCGACGA
CCAGAACGATAAGTCTCCTGATGAGCATTTCGCCTTTTCGGAGGAGATGC
TGAATACGGTGACTAAGGCGTATTTGCCCATCATCGAGAAGCATAAGAAC
GATGCCTTCACCGAGGAACAGAAGAAGTGGCAGCAGATCCGGCGTGGCCG
TTACACGGAGTTTAATTTGGTGTATGACAGAGGGACGGTGTTCGGGTTAA
AGACGGGAGGGAGGATTGAGAGTATCCTCATGTCGCTGCCGGAGACGGCT
CGATGGGAGTATGACCACCACCCGGCGGAAGGGAGCCCAGAGGCGGAGAT
CATGGATGCGTTTAAGAACGCGAGGGAATGGGTTTGAGGAGGAGGGAGGG
AGGAAGGGAGGAAGGGAGGGAGCAGAGGAGCGTTGTGGTGAGGGAGGAGA
ATGGGATAACAACGTTTGGAGAAAAGTTCGATGCGCCTGAAGAGAGGATT
CGAAAGGGCTCTTGATATGGTTACGCAGGATAAAGGAGGAGAAGGAGGAG
AAGGAGAAGGAGGAGGATAGGGGGCGTGAAGGCGCCAAGAAAGAACAACA
AGCACAAAGATCAGCTCCAACAACAAACTCAAGCACAACTACAAAGAAGA
AAAGGGAAATAACGATCCTGAAGGAGGCAGCATCACACGGCCCAAATCAC
GTAGATCACATTCAAATAACGAATTCACAGCCTTCTCCTCTTTCGATCTT
CTTCTGCGCACTCTCTGGATTGAACGACCGCTATCTCTCGCCAGCTGTTC
GAGGTAATGCTGTTCGTTGTACGACCCGTCGAAGAGACCGACGATGAGAA
ATAAGGCACTGACGCAT back to topCoding sequence (CDS) from alignment at chr12:238070..240986- >NO12G00680.1 ID=NO12G00680.1|Name=NO12G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr12:238070..240986- (Nannochloropsis oceanica)
ATGCGTGCGAGCCTCGCGACGGCCACGACGGCCGCAGCCGTGCTGCTCCT
AGCACTTCCGAGCACGTCCAACGCCCTCGCTTCCTCCGCCCGTCCCCGTG
CCATGACAACCGGATACCTTCACCAACCCATGGCAAGCGTGGGGGGCAGC
CGCCGCTTGAATGCCTTGGCAATGGCCCGTCGCACCGCTCACTTGTACCA
ACGCAGCGTCGTGGCCATGTCAGCCGCCGCCCCCACCAAGAAGGAAGAGA
CGGGCATCGGGTGGAACTCACATAAGCCCGTGACTGAAGTGCCCGAATCC
TTGGTCCGTGGCGTGGAAGGAAATGAGAGCATGCGTCGCCGGTTTGAGAA
GGCCTGCCGGGAGGCGCAGTTGGCCATCTGCAAGGCCGTGGAAGAATGCG
ACGGGGGTGCCAAGTTCCATTCCGACGCCTGGATTCGTGCCGATGGCGGG
GGAGGGATATCAATGGTCCTCGGTGATGGGAAGGTCTGGGAGAAGGCAGG
TTGTAACCTGTCGGTGGTGTATGGGAGCATGCCTCAGGAGGCGCTGCAGG
CGGCGACGGAGAGGGGGGTAGATAGGGCGAAGGGGATGAAGCCGGGCGAG
CGGGTGCCTTTCTTTGCCTGCGGTTTGAGCTCCGTCATGCACCCTAGGAA
CCCGCACTGTCCGACCATGCACTTCAACTACCGTTACTTCGAGACAGAGG
GCGGGGCTTGGTGGTTCGGCGGGGGCATGGACATAACTCCCTCCTACCTG
GACACCGACGACATGAAGCATTTCCACGGCACCTTGAAGGAAGTGTGCGA
CAAGCACGACGAGGGGTATTACCCCAAATTTAAAAAATGGGCCGACGAAT
ATTTTTTGATCAAGCACAGGGGCGAGACGCGCGGCTTGGGTGGTGTTTTT
TTCGACGACCAGAACGATAAGTCTCCTGATGAGCATTTCGCCTTTTCGGA
GGAGATGCTGAATACGGTGACTAAGGCGTATTTGCCCATCATCGAGAAGC
ATAAGAACGATGCCTTCACCGAGGAACAGAAGAAGTGGCAGCAGATCCGG
CGTGGCCGTTACACGGAGTTTAATTTGGTGTATGACAGAGGGACGGTGTT
CGGGTTAAAGACGGGAGGGAGGATTGAGAGTATCCTCATGTCGCTGCCGG
AGACGGCTCGATGGGAGTATGACCACCACCCGGCGGAAGGGAGCCCAGAG
GCGGAGATCATGGATGCGTTTAAGAACGCGAGGGAATGGGTTTGA back to top
|