NO12G00670.1, NO12G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00670.1
Unique NameNO12G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1510
Alignment locationchr12:235231..237473 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:235231..237473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00670.1 vs.
Match: EWM23633.1 (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 145.2 bits (365), Expect = 3.100e-31
Identity = 76/241 (31.54%), Postives = 127/241 (52.70%), Query Frame = 0 
Query:   49 KFQSPRLYFLGLTPRTKATLGTEDYTEALREMRGIFPEAQDSDMVPFIRICKGVVKEASKMYGDCLTWRSTMLPVSRDSCLSVLQRGMFFFHGEDKEGRPLGYLTMRGHDPKTRDLDQCLRAIIYQCEALIASKEGKEFQVTIILDRNGTTKQNQDSDMMKLFFALFSERYPDKLRRVLVCPANFMFNTFWSVIKYSMPERVRNKVTMCNNEAALTQFVDPEQLIDSLGGKDA--YDPTKA 288
            +F +PR + + LTP+ K T   E     L +M   FP A++ D+  F+        +A   Y   L WR+  LP++++SCL  LQ+G F+FHG D EGRP+ Y ++  HDPK  D+ + +R + YQ E ++A         TI+ D   T  +N D++ ++ F   F  +YP+ L ++L+ P  F   T W+     + ER  +++ M      L  ++  ++L+ + GGK+   +DP  A
Sbjct:    4 EFLTPRKWDI-LTPKAKDT--QEALRIELEKMTAHFPAAKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLPIAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHFDPDNA 241
The following BLAST results are available for this feature:
BLAST of NO12G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23633.13.100e-3131.54CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00670NO12G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00670.1NO12G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00670.1.cds1NO12G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00670.1.cds2NO12G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00670.1.cds3NO12G00670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00670.1.cds4NO12G00670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00670.1 ID=NO12G00670.1|Name=NO12G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
CTGGCACACTCACGGGCAAAACCACAAGACGATGCGCGCAGAAATCGTGC
TAGCTGCAACAAAGCTTTTAAACGAGCATGTATAGTGTCCCCGCAAGTGA
AATATTTTCGCTTGCCGTGGCAGCCACTTCTCTAGTTCTTCCTGCCTCCC
TCCTCTCCTTCCCTATGAGACGACGGACCCTATGTGACATCGCCTACCTA
ACACGTCTCGGCGGAACTTGCAAATCTACGACGTCCTTCTCTTTACATGC
CCTTGATTTCCTTGTGGACTAGTACACACCTGCCTGCCTTAACACCACCT
ATTGTACTTGGAGTGGTTTGCTTTTGTCTTTTTGCCCCTCCGTCCAAGGC
CCGTTAATCTCCCCCAGCAGATGTCAATTCAGATAAGCAAGGGAGCCGAA
AAGGCAAGAACGAGACGACGTGGACACGTCCGTATATCTTTAACCTTCTT
CCGCTAAATCGCATTCTCTGTCCTCCCAGACATACACCGTCTCACTCAAG
TTCTGATAATTGCTCGTCTCCCTTCCTCTCTCCTTTCCCTCCTCCCCCCT
TCCCTCTTGCCACATCCATACAGCGGCCCCCAGAAAAGGAATCTAAAATG
GCTTCTACTTCCACTACCGCCACTCCCCCCCTTACGGGCCCGGTCAAGAA
GGCCGAGAACCTGCAACTTGCTGGCGCTCCCTCGGGTGCGGGTGGCAGCC
CCGTAGCGAATGGGTGTGTGCCTAGGTTCGGTGCGATGACAAAATTTCAA
AGCCCTCGCTTGTACTTCCTGGGCTTGACACCCCGCACCAAGGCGACGTT
GGGCACGGAGGATTACACGGAGGCCTTGCGGGAAATGCGGGGAATCTTTC
CGGAGGCCCAAGACTCGGACATGGTCCCGTTTATCCGCATCTGCAAAGGC
GTCGTCAAGGAAGCCAGTAAGATGTACGGGGATTGCCTGACGTGGCGCTC
GACCATGCTGCCCGTCAGCAGAGACTCGTGCCTCTCGGTGTTGCAGCGTG
GGATGTTCTTCTTCCACGGTGAGGACAAGGAGGGGCGGCCTCTGGGCTAC
CTGACGATGCGCGGGCATGACCCAAAGACTCGGGATTTGGACCAGTGCTT
ACGGGCCATCATTTACCAGTGCGAGGCCCTGATTGCGAGCAAGGAGGGGA
AGGAGTTTCAGGTGACCATCATCCTGGACCGCAACGGGACAACGAAGCAG
AACCAGGATTCGGACATGATGAAGCTCTTCTTTGCCCTCTTCTCGGAGCG
CTACCCTGACAAGCTGCGCCGTGTGTTGGTGTGCCCTGCGAATTTCATGT
TTAATACCTTCTGGTCCGTGATTAAGTATTCTATGCCCGAGCGTGTGAGG
AACAAGGTGACCATGTGTAACAACGAGGCGGCCTTGACTCAGTTTGTGGA
CCCCGAGCAACTCATTGATTCCTTAGGGGGGAAGGATGCCTATGACCCCA
CCAAGGCGGATTTTTAAGTGCTGAGGGAAGGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAA
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protein sequence of NO12G00670.1

>NO12G00670.1-protein ID=NO12G00670.1-protein|Name=NO12G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MASTSTTATPPLTGPVKKAENLQLAGAPSGAGGSPVANGCVPRFGAMTKF
QSPRLYFLGLTPRTKATLGTEDYTEALREMRGIFPEAQDSDMVPFIRICK
GVVKEASKMYGDCLTWRSTMLPVSRDSCLSVLQRGMFFFHGEDKEGRPLG
YLTMRGHDPKTRDLDQCLRAIIYQCEALIASKEGKEFQVTIILDRNGTTK
QNQDSDMMKLFFALFSERYPDKLRRVLVCPANFMFNTFWSVIKYSMPERV
RNKVTMCNNEAALTQFVDPEQLIDSLGGKDAYDPTKADF*
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mRNA from alignment at chr12:235231..237473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00670.1 ID=NO12G00670.1|Name=NO12G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2243bp|location=Sequence derived from alignment at chr12:235231..237473+ (Nannochloropsis oceanica)
CTGGCACACTCACGGGCAAAACCACAAGACGATGCGCGCAGAAATCGTGC
TAGCTGCAACAAAGCTTTTAAACGAGCATGTATAGTGTCCCCGCAAGTGA
AATATTTTCGCTTGCCGTGGCAGCCACTTCTCTAGTTCTTCCTGCCTCCC
TCCTCTCCTTCCCTATGAGACGACGGACCCTATGTGACATCGCCTACCTA
ACACGTCTCGGCGGAACTTGCAAATCTACGACGTCCTTCTCTTTACATGC
CCTTGATTTCCTTGTGGACTAGTACACACCTGCCTGCCTTAACACCACCT
ATTGTACTTGGAGTGGTTTGCTTTTGTCTTTTTGCCCCTCCGTCCAAGGC
CCGTTAATCTCCCCCAGCAGATGTCAATTCAGATAAGCAAGGGAGCCGAA
AAGGCAAGAACGAGACGACGTGGACACGTCCGTATATCTTTAACCTTCTT
CCGCTAAATCGCATTCTCTGTCCTCCCAGACATACACCGTCTCACTCAAG
TTCTGATAATTGCTCGTCTCCCTTCCTCTCTCCTTTCCCTCCTCCCCCCT
TCCCTCTTGCCACATCCATACAGCGGCCCCCAGAAAAGGAATCTAAAATG
GCTTCTACTTCCACTACCGCCACTCCCCCCCTTACGGGCCCGGTCAAGAA
GGCCGAGAACCTGCAACTTGCTGGCGCTCCCTCGGGTGCGGGTGGCAGCC
CCGTAGCGAATGGGTGTGTGCCTAGGTTCGGTGCGATGACAAAATTTCAA
AGCCCTCGCTTGTACTTCCTGGGCTTGACACCCCGCACCAAGGCGACGTT
GGGCACGGAGGATTACACGGAGGCCTTGCGGGAAATGCGGGGAATCTTTC
CGGAGGTAGGATGAGAGGGAGAGGGGGAGGGAGGGAGGGAGGGAAGGATT
GAGAGGGAGGGAGGGAGTATGGGGGAAGGAGGAGGCGGAGATGGAAATCG
GTGAGCGAGTCTTTCCTAATGTCAAAGAAGAAGGGAGGATAGCGGATAGA
CCACGGAGGGAGAGAAGCACGCATTGATTGCAGCAAAGATGTAAAGGCAT
GCATGCACTCTCTCACGTCCCTCACCCTTTCTTCATTTCCTTCCATCCAG
GCCCAAGACTCGGACATGGTCCCGTTTATCCGCATCTGCAAAGGCGTCGT
CAAGGAAGCCAGTAAGATGTACGGGGATTGCCTGACGTGGCGCTCGACCA
TGCTGCCCGTCAGCAGAGACTCGTGCCTCTCGGTGTTGCAGCGTGGGATG
TTCTTCTTCCACGGTGAGGACAAGGAGGGGCGGCCTCTGGGCTACCTGAC
GATGCGCGGGCATGACCCAAAGACTCGGGATTTGGACCAGTGCTTACGGG
CCATCATTTACCAGTGCGAGGCCCTGATTGCGAGCAAGGAGGGGAAGGAG
TTTCAGGTACGTGTCTGTCGGGAGGGGTATGTAGTTTGAAGCTCTTATTT
TATAGATTATGAAAAGATTTAATTTATGGTTTGTTAACTCAAGGAGATAT
TTCTACTTCGTGGCCAATGTGTTATGGGTCTTGGGGGTTCTGCCTCGTAT
ATTCTTCTCCCCTGTCGAAATCTCCACCATCTTGGCAAGCACACTCAATC
CCTCCCTCCCTTTCCCCCCTCTCTCTCTCCCTCCCTCCCTCCCCTCTTCC
CCAAGGTGACCATCATCCTGGACCGCAACGGGACAACGAAGCAGAACCAG
GATTCGGACATGATGAAGCTCTTCTTTGCCCTCTTCTCGGAGCGCTACCC
TGGTAAGGAGAAGGGGAGGGAGGGACTGAAGGAAGGAGGGGGGGCGGCAA
TTTGGGAGTAAAAGAACACAGTCCATCCAAATCCCTCCCTCCCTCCCTCC
CTCCTCTCCTCATTTTCAAACAAAGAGACTGTACCGTATTTTGGTAGAGC
CCGTCGTACCTCTTCTCCAAACTCCAAACTCATCCCTCCCCCCCCAACCT
CCCTCCCTCCCTCCCTCCCTCCCTGCTTTCCACCCCTCCAGACAAGCTGC
GCCGTGTGTTGGTGTGCCCTGCGAATTTCATGTTTAATACCTTCTGGTCC
GTGATTAAGTATTCTATGCCCGAGCGTGTGAGGAACAAGGTGACCATGTG
TAACAACGAGGCGGCCTTGACTCAGTTTGTGGACCCCGAGCAACTCATTG
ATTCCTTAGGGGGGAAGGATGCCTATGACCCCACCAAGGCGGATTTTTAA
GTGCTGAGGGAAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAA
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Coding sequence (CDS) from alignment at chr12:235231..237473+

>NO12G00670.1 ID=NO12G00670.1|Name=NO12G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr12:235231..237473+ (Nannochloropsis oceanica)
ATGGCTTCTACTTCCACTACCGCCACTCCCCCCCTTACGGGCCCGGTCAA
GAAGGCCGAGAACCTGCAACTTGCTGGCGCTCCCTCGGGTGCGGGTGGCA
GCCCCGTAGCGAATGGGTGTGTGCCTAGGTTCGGTGCGATGACAAAATTT
CAAAGCCCTCGCTTGTACTTCCTGGGCTTGACACCCCGCACCAAGGCGAC
GTTGGGCACGGAGGATTACACGGAGGCCTTGCGGGAAATGCGGGGAATCT
TTCCGGAGGCCCAAGACTCGGACATGGTCCCGTTTATCCGCATCTGCAAA
GGCGTCGTCAAGGAAGCCAGTAAGATGTACGGGGATTGCCTGACGTGGCG
CTCGACCATGCTGCCCGTCAGCAGAGACTCGTGCCTCTCGGTGTTGCAGC
GTGGGATGTTCTTCTTCCACGGTGAGGACAAGGAGGGGCGGCCTCTGGGC
TACCTGACGATGCGCGGGCATGACCCAAAGACTCGGGATTTGGACCAGTG
CTTACGGGCCATCATTTACCAGTGCGAGGCCCTGATTGCGAGCAAGGAGG
GGAAGGAGTTTCAGGTGACCATCATCCTGGACCGCAACGGGACAACGAAG
CAGAACCAGGATTCGGACATGATGAAGCTCTTCTTTGCCCTCTTCTCGGA
GCGCTACCCTGACAAGCTGCGCCGTGTGTTGGTGTGCCCTGCGAATTTCA
TGTTTAATACCTTCTGGTCCGTGATTAAGTATTCTATGCCCGAGCGTGTG
AGGAACAAGGTGACCATGTGTAACAACGAGGCGGCCTTGACTCAGTTTGT
GGACCCCGAGCAACTCATTGATTCCTTAGGGGGGAAGGATGCCTATGACC
CCACCAAGGCGGATTTTTAA
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Synonyms
Publications