NO12G00630.1, NO12G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00630.1
Unique NameNO12G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr12:227119..228301 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:227119..228301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00630.1 vs.
Match: EWM25954.1 (proteasome subunit alpha type-6 [Nannochloropsis gaditana])

HSP 1 Score: 448.4 bits (1152), Expect = 1.500e-122
Identity = 224/246 (91.06%), Postives = 235/246 (95.53%), Query Frame = 0
Query:    1 MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNGFFHTLKEEEIDMHLTAITERDA 247
            MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANS+GLTSVAVRGK+CVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLR EAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEA NWLEKKV ++  + T+ TV++AIMALQSVLSTDF+G+EIEVGVVEGV GFFHTL E EID HLTAITE+DA
Sbjct:    1 MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEATNWLEKKVGDLGGLGTEETVELAIMALQSVLSTDFKGSEIEVGVVEGVGGFFHTLTEGEIDHHLTAITEKDA 246          
The following BLAST results are available for this feature:
BLAST of NO12G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25954.11.500e-12291.06proteasome subunit alpha type-6 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00630NO12G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00630.1NO12G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00630.1.cds1NO12G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00630.1.cds2NO12G00630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00630.1.cds3NO12G00630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00630.1.cds4NO12G00630.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00630.1 ID=NO12G00630.1|Name=NO12G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCC
GCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCG
ATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTC
ACGCAGAAGAAGGTGCCTGACCGTTTGATTGATCCGTCCTCTGTCTCGAA
CATTTACCAAATCACGGACAAAGTCGGCGCAGTCATGACAGGCATGACGA
CAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCAGAGGCTCACGAGTTC
CGATTTAAGTATGGCTACGACATTCCAGTTCACGTGCTTGCGAAGCGGAT
TGCGGACATTGCCCAGGTGTACACTCAACAAGCCTCCATGCGCGCCCTGG
CCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCGCGGACCCCAGCTG
TACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCAAGGCGACTGCTGC
GGGCGTGAAGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGG
AGATGAGCACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCC
CTGCAGTCCGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGG
GGTGGTAGAGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGA
TTGATATGCACTTGACGGCGATTACCGAGAGGGATGCGTAA
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protein sequence of NO12G00630.1

>NO12G00630.1-protein ID=NO12G00630.1-protein|Name=NO12G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVV
TQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEF
RFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQL
YKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMA
LQSVLSTDFRGTEIEVGVVEGVNGFFHTLKEEEIDMHLTAITERDA*
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mRNA from alignment at chr12:227119..228301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00630.1 ID=NO12G00630.1|Name=NO12G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1183bp|location=Sequence derived from alignment at chr12:227119..228301+ (Nannochloropsis oceanica)
ATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCC GCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCG ATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTC ACGCAGAAGAAGGTGCCTGACCGTTTGATTGGTACGTTGGCCTTGCGGTC AGCAGGCTATAGTTTGATCCCTCGGGAGAGTGGGGCCTTGGATACCCGTG CTTGGGTGGTGATGACGACAGGATTCGCACCGACATCAGACGTTCACCGT CCCTTCCCTCCTCGCCGTCCTCCCCTCTCTCTCCTCCCCCCCTCAGATCC GTCCTCTGTCTCGAACATTTACCAAATCACGGACAAAGTCGGCGCAGTCA TGACAGGCATGACGACAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCA GAGGCTCACGAGTTCCGATTTAAGTATGGCTACGACATTCCAGTTCACGT GCTTGCGAAGCGGATTGCGGACATTGCCCAGGTAACCTCCCCCCCTTCCT CCCCCCTCCCTTTCTTCGCCCGTTCATCTCTCTCTGTGCCCTGAATCGTC CGCCCGCGGTGTGCACAGGTATACTCATCGGCCATCCCCCCATCCCTCCC TCCCTTCCTCCCTTCCCTCCCCCCTTAGGTGTACACTCAACAAGCCTCCA TGCGCGCCCTGGCCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCGC GGACCCCAGCTGTACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCAA GGTAAGGAGAGATCTGAAAGGAGGGAGGGAGGGAGGGAAGGAGAGAGGCA GAGAGCGTCCGAATAAAGCGGAACAGCCCAGCTGACGCTCCTCCCTCTTC CTTCCTCTTACCTTCCATCTTCCTTAAATAGGCGACTGCTGCGGGCGTGA AGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGGAGATGAGC ACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCCCTGCAGTC CGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGGGGTGGTAG AGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGATTGATATG CACTTGACGGCGATTACCGAGAGGGATGCGTAA
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Coding sequence (CDS) from alignment at chr12:227119..228301+

>NO12G00630.1 ID=NO12G00630.1|Name=NO12G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr12:227119..228301+ (Nannochloropsis oceanica)
ATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCC
GCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCG
ATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTC
ACGCAGAAGAAGGTGCCTGACCGTTTGATTGATCCGTCCTCTGTCTCGAA
CATTTACCAAATCACGGACAAAGTCGGCGCAGTCATGACAGGCATGACGA
CAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCAGAGGCTCACGAGTTC
CGATTTAAGTATGGCTACGACATTCCAGTTCACGTGCTTGCGAAGCGGAT
TGCGGACATTGCCCAGGTGTACACTCAACAAGCCTCCATGCGCGCCCTGG
CCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCGCGGACCCCAGCTG
TACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCAAGGCGACTGCTGC
GGGCGTGAAGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGG
AGATGAGCACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCC
CTGCAGTCCGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGG
GGTGGTAGAGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGA
TTGATATGCACTTGACGGCGATTACCGAGAGGGATGCGTAA
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Synonyms
Publications