NO12G00620.1, NO12G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00620.1
Unique NameNO12G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr12:224544..225925 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:224544..225925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00620.1 vs.
Match: EWM25967.1 (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana])

HSP 1 Score: 364.4 bits (934), Expect = 4.000e-97
Identity = 196/269 (72.86%), Postives = 222/269 (82.53%), Query Frame = 0 
Query:    1 MELPPWEVL--LTLLQTGLILLLFLVVRQVLAWKGRKHFPPLTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVS 268
            MELPP EV+  L LLQ    LLLFL++RQ   WKGRK+FPPLT GSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALR++GV GIHPVI+DVAK  SV+AC  HVLSLL  KT+PPL+ V+NNAGLLQDATVEFHDM  MRHMF+VNYFGL++VSS FLPLLR    SSS       +GRLINIGSV+GKVSFPRYGAYAASKHAVEA+TD+LRAEL PAGVSVSL+QPGFCRTELF+RGV      ++++++H      VS
Sbjct:   15 MELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNH--QGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVV-----REKKEAHAAGQQIVS 276
The following BLAST results are available for this feature:
BLAST of NO12G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25967.14.000e-9772.86short-chain dehydrogenase reductase sdr, partial [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00620NO12G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00620.1NO12G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00620.1.cds1NO12G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00620.1.cds2NO12G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00620.1.cds3NO12G00620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00620.1 ID=NO12G00620.1|Name=NO12G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ATGGAGCTTCCCCCGTGGGAGGTATTACTCACACTTCTCCAAACCGGCTT
AATCCTGCTGCTTTTCCTCGTCGTTCGCCAAGTTCTCGCCTGGAAGGGCC
GCAAGCACTTCCCTCCCTTGACCTGTGGTAGCGTTCTCCTCACAGGCACC
AGCAGTGGAATCGGTCGCACCGCAGCCGTGTACCTGGCCCAGCGTGGGTT
CACAGTGTTGGCTGGGGTACGCAAGGAGAGCGATGCACAGGCGTTGCGAG
AGATTGGGGTGCCCGGGATCCACCCTGTGATTCTTGATGTGGCCAAGCTG
GACAGCGTGCAGGCTTGCCATGCCCACGTCCTCTCGCTCCTCTCCACCAA
GACCATCCCCCCCCTCATGGCCGTCATTAACAACGCTGGACTCCTTCAAG
ATGCCACGGTAGAATTCCACGATATGGACATGATGCGGCACATGTTCGAC
GTTAACTACTTTGGGCTCGTCACCGTCTCCTCCGTCTTCCTACCCCTCCT
CCGTGGCGCGTCTTCCTCCTCCTCCTCCACCTCCGCCTCTTTCCCAAAAG
GACGACTCATTAATATCGGCTCCGTCGCTGGCAAGGTGTCCTTTCCTCGC
TACGGGGCCTATGCCGCAAGCAAGCACGCAGTGGAAGCCATCACCGACAC
GCTCCGCGCCGAGCTAACCCCAGCCGGAGTGAGTGTCTCCTTGATCCAGC
CGGGCTTCTGTCGAACGGAGTTGTTTGTCCGCGGAGTGGCTCAACCGGAG
CTACAGCAGCAGCAACAGCAGTCGCATGTCAAGAATGATACGTCCGTGTC
TCCTGCAGCCAAGAAAGCCTATCCGTTTTTCTACACTCAAAAATTTGAAA
AGAAAAACGCCGGACCGATGGAAAACGGCTCGGACCCTGTGGTGGTCTGT
CAGGCCATGCACCATGCTCTGACCAGCGCGTACCCCAAGACACGTTATCC
CGTCGCGAAGATAAACCGAGCGAAAGTGGCGCTGGTGTTTCTCGTGCGTC
AGTTGCTTCCCGATCGCGTTTTTGATAAGAGCTTTCTGCTGAACGTATAA
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protein sequence of NO12G00620.1

>NO12G00620.1-protein ID=NO12G00620.1-protein|Name=NO12G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MELPPWEVLLTLLQTGLILLLFLVVRQVLAWKGRKHFPPLTCGSVLLTGT
SSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKL
DSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFD
VNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPR
YGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPE
LQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVC
QAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFDKSFLLNV*
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mRNA from alignment at chr12:224544..225925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00620.1 ID=NO12G00620.1|Name=NO12G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp|location=Sequence derived from alignment at chr12:224544..225925+ (Nannochloropsis oceanica)
ATGGAGCTTCCCCCGTGGGAGGTATTACTCACACTTCTCCAAACCGGCTT
AATCCTGCTGCTTTTCCTCGTCGTTCGCCAAGTTCTCGCCTGGAAGGGCC
GCAAGCACTTCCCTCCCTTGACCTGTGGTAGCGTTCTCCTCACAGGCACC
AGCAGTGGAATCGGTCGCACCGCAGCCGTGTACCTGGCCCAGCGTGGGTT
CACAGTGTTGGCTGGGGTACGCAAGGAGAGCGATGCACAGGCGTTGCGAG
AGATTGGGGTGCCCGGGATCCACCCTGTGATTCTTGATGTGGCCAAGCTG
GACAGCGTGCAGGCTTGCCATGCCCACGTCCTCTCGCTCCTCTCCACCAA
GACCATCCCCCCCCTCATGGCCGTCATTAACAACGCTGGACTCCTTCAAG
ATGCCACGGTAGAATTCCACGATATGGACATGATGCGGCACATGTTCGAC
GTTAACTACTTTGGGCTCGTCACCGTCTCCTCCGTCTTCCTACCCCTCCT
CCGTGGCGCGTCTTCCTCCTCCTCCTCCACCTCCGCCTCTTTCCCAAAAG
GACGACTCATTAATATCGGCTCCGTCGCTGGCAAGGTGTCCTTTCCTCGC
TACGGGGCCTATGCCGCAAGCAAGCACGCAGTGGAAGCCATCACCGACAC
GCTCCGCGCCGAGCTAACCCCAGCCGGAGTGAGTGTCTCCTTGATCCAGC
CGGGCTTCTGTCGAACGGAGTTGTTTGTCCGCGGAGTGGCTCAACCGGAG
CTACAGCAGCAGCAACAGCAGTCGCATGTCAAGAATGATACGGTGAGTGA
GTGATTGATGCGTGAGGGAGGAAGGAAGGAGGAGGAGGAGGAGGTGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAAAGC
AGAGCAGCAAATAAGTTGACAACCCCCTCCGCCCTCCCTCCCTCCACGCT
TCCCTCCCTCGCTTAGTCCGTGTCTCCTGCAGCCAAGAAAGCCTATCCGT
TTTTCTACACTCAAAAATTTGAAAAGAAAAACGCCGGACCGATGGAAAAC
GGCTCGGACCCTGTGGTGGTCTGTCAGGCAGGAAGGGGGGGGTGAGGGAA
GGGAGGGAGCGAGGAGGGAGCGGGGAGAGGTGTTTTTAATGTACTTGCAT
TTCACTTCTATCTCCACCCTTCCACGGCTACAACCTGTGGAGCTGAACCT
CCTCCTATCCTCTCATCCCTCCCTCCTTCCCTCAGGCCATGCACCATGCT
CTGACCAGCGCGTACCCCAAGACACGTTATCCCGTCGCGAAGATAAACCG
AGCGAAAGTGGCGCTGGTGTTTCTCGTGCGTCAGTTGCTTCCCGATCGCG
TTTTTGATAAGAGCTTTCTGCTGAACGTATAA
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Coding sequence (CDS) from alignment at chr12:224544..225925+

>NO12G00620.1 ID=NO12G00620.1|Name=NO12G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at chr12:224544..225925+ (Nannochloropsis oceanica)
ATGGAGCTTCCCCCGTGGGAGGTATTACTCACACTTCTCCAAACCGGCTT
AATCCTGCTGCTTTTCCTCGTCGTTCGCCAAGTTCTCGCCTGGAAGGGCC
GCAAGCACTTCCCTCCCTTGACCTGTGGTAGCGTTCTCCTCACAGGCACC
AGCAGTGGAATCGGTCGCACCGCAGCCGTGTACCTGGCCCAGCGTGGGTT
CACAGTGTTGGCTGGGGTACGCAAGGAGAGCGATGCACAGGCGTTGCGAG
AGATTGGGGTGCCCGGGATCCACCCTGTGATTCTTGATGTGGCCAAGCTG
GACAGCGTGCAGGCTTGCCATGCCCACGTCCTCTCGCTCCTCTCCACCAA
GACCATCCCCCCCCTCATGGCCGTCATTAACAACGCTGGACTCCTTCAAG
ATGCCACGGTAGAATTCCACGATATGGACATGATGCGGCACATGTTCGAC
GTTAACTACTTTGGGCTCGTCACCGTCTCCTCCGTCTTCCTACCCCTCCT
CCGTGGCGCGTCTTCCTCCTCCTCCTCCACCTCCGCCTCTTTCCCAAAAG
GACGACTCATTAATATCGGCTCCGTCGCTGGCAAGGTGTCCTTTCCTCGC
TACGGGGCCTATGCCGCAAGCAAGCACGCAGTGGAAGCCATCACCGACAC
GCTCCGCGCCGAGCTAACCCCAGCCGGAGTGAGTGTCTCCTTGATCCAGC
CGGGCTTCTGTCGAACGGAGTTGTTTGTCCGCGGAGTGGCTCAACCGGAG
CTACAGCAGCAGCAACAGCAGTCGCATGTCAAGAATGATACGTCCGTGTC
TCCTGCAGCCAAGAAAGCCTATCCGTTTTTCTACACTCAAAAATTTGAAA
AGAAAAACGCCGGACCGATGGAAAACGGCTCGGACCCTGTGGTGGTCTGT
CAGGCCATGCACCATGCTCTGACCAGCGCGTACCCCAAGACACGTTATCC
CGTCGCGAAGATAAACCGAGCGAAAGTGGCGCTGGTGTTTCTCGTGCGTC
AGTTGCTTCCCGATCGCGTTTTTGATAAGAGCTTTCTGCTGAACGTATAA
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Synonyms
Publications