NO12G00610.1, NO12G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00610.1
Unique NameNO12G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1645
Alignment locationchr12:220900..224092 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:220900..224092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00610.1 vs.
Match: WP_052354834.1 (glycerol-3-phosphate acyltransferase [Candidatus Protochlamydia sp. R18])

HSP 1 Score: 222.2 bits (565), Expect = 3.000e-54
Identity = 114/263 (43.35%), Postives = 164/263 (62.36%), Query Frame = 0 
Query:  110 LMKEAAENSRSLYQFEPFHKNIRGPVDFTAFGENFFDILCVKEQSGVLGRKNMAKIVDYVRQGHNVVLLANHQTEPDPYILRSAFKRLVPADDPLLDRLVFVAGAKVRTDLFTIPFSKGLNLICIHSKKYIEDDPATKPLKTQENLAAMKALQGLIVEGGHILWVAPSGGRDRTDVHTGKMAVAPFDSRAVDMFRVLSTKSQHPTHFFPLSMLTAQVLPPPAKVAMEVGERRLVARRPVHVYFGDELTPERVG-SEFVARKMK 372
            L + A + S + YQFE FH++IR P D+  FG +F   L   E+S VLGR+ +AKI   + QG NV+LLANHQTEPDP IL    + +   D  L   ++F+AG +V +D   IP S G NL+CI+SKK+I   P  K  K   N   M+ +  L+ EGG  ++VAPSGGRDR +   G++ +APFD ++++MF +++ ++ HPTHF+PLS+ T  ++PPP  V  E+GE+R     PVH+ F  E+  E    SE + +K K
Sbjct:   52 LFELAMQQSENPYQFEIFHQSIRSPFDYYQFGLDFIRPLINFEKSTVLGREQLAKIYQQMAQGDNVILLANHQTEPDPQILSLMLENI---DKKLATEMIFIAGHRVISDPLAIPMSMGRNLLCIYSKKHISHPPEKKTQKVSHNQRTMRKMSELLSEGGRCIYVAPSGGRDRRN-SEGQITIAPFDPQSLEMFWLMAQQADHPTHFYPLSLHTYDLMPPPRHVEKELGEKRTAQFTPVHLAFSSEIDMEHFSESEHLDKKTK 310
The following BLAST results are available for this feature:
BLAST of NO12G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_052354834.13.000e-5443.35glycerol-3-phosphate acyltransferase [Candidatus P... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00610NO12G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00610.1NO12G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00610.1.cds1NO12G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds2NO12G00610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds3NO12G00610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds4NO12G00610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds5NO12G00610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds6NO12G00610.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds7NO12G00610.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds8NO12G00610.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds9NO12G00610.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds10NO12G00610.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds11NO12G00610.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00610.1.cds12NO12G00610.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00610.1 ID=NO12G00610.1|Name=NO12G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
ACAGGGAGAGAGAGATGAGCAAGTCCTCCTTCATATGTGTCCTGGCTACG
GCTGCGGCCATGCTGGCCGCCACCACCCAGGCGTTTGTCCTCCCAACCAG
CCGGCTATTGGGGACATCGTCGTTGAAAATGATGGCCGCCGGCACAACCC
AGGCAGGCGAGAAAAAGGCCTTGACTGTGGCGGATGTGAAGACGAGGCTC
ATAGAAAAGATCACCTCCGACCCGAACATGAAGCTGCCCGACCAGTTCCA
GCAAGCGTTGACCGACATTTTGGACGGCATGACTGAAGTGGCAGAAAACA
CGGGCCTGGACCCCGAGAAGTACCAAGAAATGCTGGGGTTGCTCATGAAG
GAGGCAGCAGAGAACTCCCGGTCCTTGTATCAGTTCGAGCCGTTCCACAA
AAACATCCGGGGTCCTGTGGACTTCACGGCATTTGGAGAAAATTTCTTTG
ACATCCTTTGCGTCAAGGAGCAAAGCGGAGTCTTGGGCCGGAAGAACATG
GCCAAAATCGTCGACTACGTCCGACAAGGACACAACGTGGTGCTCCTGGC
CAACCATCAGACGGAGCCCGATCCCTACATCCTCCGGTCGGCCTTCAAGC
GCCTGGTGCCGGCGGATGATCCTCTGCTGGACCGGCTGGTGTTCGTGGCT
GGCGCGAAAGTACGCACGGATTTGTTCACCATCCCCTTCTCCAAGGGACT
GAATTTGATATGCATCCACTCCAAGAAGTACATCGAGGACGACCCCGCCA
CCAAGCCCCTCAAGACACAAGAGAATTTGGCTGCCATGAAGGCCCTGCAA
GGCCTCATCGTCGAAGGCGGACACATTCTCTGGGTTGCGCCCTCCGGCGG
CCGAGACCGGACGGACGTTCACACGGGGAAGATGGCCGTGGCTCCCTTCG
ACTCCCGCGCGGTGGATATGTTCCGGGTCTTGAGCACCAAGAGCCAGCAC
CCTACCCACTTCTTTCCCTTGTCCATGCTGACGGCGCAGGTCCTTCCCCC
TCCAGCCAAAGTGGCCATGGAGGTGGGTGAACGTCGGCTGGTGGCGCGCC
GACCCGTGCATGTGTATTTTGGGGATGAGCTAACCCCTGAACGGGTGGGA
AGTGAATTTGTGGCACGAAAGATGAAGGACGGCACGGCGGAAGGTTTGAC
GGAGGAGGAGCTGATGAAGAAGGCGGGGAAGGAGGGTTTTACCTATGTGG
CGGAGGGGGATGTCAAGAGGCATTATGATGTGCTTATGGGCCTGGATCTG
GTGTTGGAGGAAGAGGAGGTGTCTGTGCAGTACCATTAAATCAGGTGGGC
CGCCGTGGGGAGGGAGGGAGGGAGGTGAGAGGCCGTGTAGCATACATGTG
ATGTGGAGGGAAGAGGAATTGTGGTCAAAGACTGGAGATGGATAGCTTCT
ATGTGATGTTCGTCTTGTGCGTGTTATCCGGTACCTGAGAGTATCTCGGA
CTGCGACTTAATATATGTTTGTCCCAACGTCCCCGCATTCCGTCCGGAAG
GTTACTAACTCCGAATAAAGAAAGATGGACAGCAGGAAAGAAAGAGGTGA
CATCCAAACAACCGATCCTCAATATACAACACATCTTTTTGTATTCCTTC
TGGTGCCGGGCTTAATTTAATCCAAATCCTACTTGTTGGAGCAGG
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protein sequence of NO12G00610.1

>NO12G00610.1-protein ID=NO12G00610.1-protein|Name=NO12G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MSKSSFICVLATAAAMLAATTQAFVLPTSRLLGTSSLKMMAAGTTQAGEK
KALTVADVKTRLIEKITSDPNMKLPDQFQQALTDILDGMTEVAENTGLDP
EKYQEMLGLLMKEAAENSRSLYQFEPFHKNIRGPVDFTAFGENFFDILCV
KEQSGVLGRKNMAKIVDYVRQGHNVVLLANHQTEPDPYILRSAFKRLVPA
DDPLLDRLVFVAGAKVRTDLFTIPFSKGLNLICIHSKKYIEDDPATKPLK
TQENLAAMKALQGLIVEGGHILWVAPSGGRDRTDVHTGKMAVAPFDSRAV
DMFRVLSTKSQHPTHFFPLSMLTAQVLPPPAKVAMEVGERRLVARRPVHV
YFGDELTPERVGSEFVARKMKDGTAEGLTEEELMKKAGKEGFTYVAEGDV
KRHYDVLMGLDLVLEEEEVSVQYH*
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mRNA from alignment at chr12:220900..224092+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00610.1 ID=NO12G00610.1|Name=NO12G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3193bp|location=Sequence derived from alignment at chr12:220900..224092+ (Nannochloropsis oceanica)
ACAGGGAGAGAGAGATGAGCAAGTCCTCCTTCATATGTGTCCTGGCTACG
GCTGCGGCCATGCTGGCCGCCACCACCCAGGCGTTTGTCCTCCCAACCAG
GTGAGAAGCAGGGGAAAATATTTGGGGGGGTGGGGAGGCGGAAGGGTAGA
GGTAGGGAGGCGGAAGGGTAGAATCGGACAACATTTTTCCTTCACACAGC
ATCACCCTACTCCATATATCAAATAAAAATGTAACTACAGCCGGCTATTG
GGGACATCGTCGTTGAAAGTGAGTGTCGCAGGCCTTCCAATTGCCTTTCT
TTCTCCCTCTTGTTCCTTCGCATCACGACCTCCCCACTCACCCTCCCTCC
CTCCCTCTTCCCCGCCATTTCTTTTTTAGATGATGGCCGCCGGCACAACC
CAGGCAGGCGAGAAAAAGGCCTTGACTGTGGCGGATGTGAAGACGAGGGT
AAGCACCTCGTGGCTAATACTTAAAGAATCGGAGAGGAAAGTAATAGCTG
TTTCATCACATGTCGTCTGACCCCCCCCCCCTCCCCCTCTCTCCCCTCCT
CCCTCCCTCCCTCCCTCTCCAGCTCATAGAAAAGATCACCTCCGACCCGA
ACATGAAGCTGCCCGACCAGTTCCAGCAAGGTACAGGGGAAGGGAGGGAA
GGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGAGAAAGAGGGAGGGACTG
ATGAACCACAACCGAGGAGACAAGCCCAAAATAAAGAGGGGAAGATGCAG
TACTATCATGCTTACTATTCCCACAACTCATGTCACATCCAATTCTCATG
CCTTCTCGAATAAAACAGCGTTGACCGACATTTTGGACGGCATGACTGAA
GTGGCAGAAAACACGGGTAAGCAGCACGCACACGCACTGACACCCATTAA
GGAGAGGAAAACATGGAATCATTCCCTTACCCTTCCCTTCCTCCCGCCCT
CACCTTTTCAGGCCTGGACCCCGAGAAGTACCAAGAAATGCTGGGGTTGC
TCATGAAGGAGGCAGCAGAGAACTCCCGGTCCTTGTATCAGTTCGAGCCG
TTCCACAAAAACATCCGGGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
GAGAGGGAGGGAAGGGGATGGAGATTGTGATGCGGCGTGTACAGGCACAC
TTATTTTTTCTTCTTCTTGTTGTTGCTGTTACTTTTATTTGGTAGGTCCT
GTGGACTTCACGGCATTTGGAGAAAATTTCTTTGACATCCTTTGCGTCAA
GGTAGGGAGGTCCGGAGGGAGGGAGGGAAGGAGGGGATGAGCGCATCCTG
TGTCTTCATGTGCGATTGATCCTCGAGACGGATGGCTGACCTCCCCTCCC
TCCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTTCTCCTCTGCAGGAGCA
AAGCGGAGTCTTGGGCCGGAAGAACATGGCCAAAATCGTCGACTACGTCC
GACAAGGTACCTCCCTCCCTCCCTCCGTCCCTCCTCCTTCTCAATTTTCA
TGCCCAACTCTCCCTCCGTCCCTCCCTCCCCCCCCCTCCCTCCGTCCCTT
TCTCCCTTCCATGCCCAACCCTTCCTCCCTCCTTCCCTCCCTCCCTCCCT
CCCTGCCTCCTTCAGGACACAACGTGGTGCTCCTGGCCAACCATCAGACG
GAGCCCGATCCCTACATCCTCCGGTCGGCCTTCAAGCGCCTGGTGCCGGC
GGATGATCCTCTGCTGGACCGGCTGGTGTTCGTGGCTGGCGCGAAAGTAC
GCACGGATTTGTTCACCATCCCCTTCTCCAAGGGACTGAATTTGATATGT
AGGTGGATGGATGGATGGAGGGAGGGAGGGAGGGAAGAAAGGTCCACAAA
CATTGTCATACTTGACTGCACGGCCTGACCTTCCGATTTCCCTCCCTTCT
CCCTCCCTCCCTCCCTTGCCCCAGGCATCCACTCCAAGAAGTACATCGAG
GACGACCCCGCCACCAAGCCCCTCAAGACACAAGAGAATTTGGCTGCCAT
GAAGGTGCATCCTCCCTCCCTCCCTCCCACCCACCCTCCCTCCCTCGCAA
ATTGACTTTTCGAAAGCAAGATCACTAGCACCTCGAAAACAGTCACATCC
TCAACCCCCCCCTTTCTTCGTCCCTCCCCCCCTCCCTCCCCCCCTCCCTC
CTCCAGGCCCTGCAAGGCCTCATCGTCGAAGGCGGACACATTCTCTGGGT
TGCGCCCTCCGGCGGCCGAGACCGGACGGACGTTCACACGGGGAAGATGG
CCGTGGCTCCCTTCGACTCCCGCGCGGTGGATATGTTCCGGGTCTTGAGC
ACCAAGAGCCAGCACCCTACCCACTTCTTTCCCTTGTCCATGCTGACGGC
GCAGGTAGGGAAAGAAGGAGGGTGGGGGGTAGGGGGGGAAGGGAGGGAGG
GGGGGAAGGAAGGTACGGTATTCGGAACCATCAAAACCTTAGGGGGGGGG
CGCACTCGACTGATAATCATAATTCCAAGCCCCTCACCCTTCCCTCCCTT
CCTGCCTCCCTCCCTCTCTCCCTCCCTCCCTCTTCAGGTCCTTCCCCCTC
CAGCCAAAGTGGCCATGGAGGTGGGTGAACGTCGGCTGGTGGCGCGCCGA
CCCGTGCATGTGTATTTTGGGGATGAGCTAACCCCTGAACGGGTGGGAAG
TGAATTTGTGGCACGAAAGATGAAGGACGGCACGGCGGAAGGTTTGACGG
AGGAGGAGCTGATGAAGAAGGCGGGGAAGGAGGGTTTTACCTATGTGGCG
GAGGGGGATGTCAAGAGGCATTATGATGTGCTTATGGGCCTGGATCTGGT
GTTGGAGGAAGAGGAGGTGTCTGTGCAGTACCATTAAATCAGGTGGGCCG
CCGTGGGGAGGGAGGGAGGGAGGTGAGAGGCCGTGTAGCATACATGTGAT
GTGGAGGGAAGAGGAATTGTGGTCAAAGACTGGAGATGGATAGCTTCTAT
GTGATGTTCGTCTTGTGCGTGTTATCCGGTACCTGAGAGTATCTCGGACT
GCGACTTAATATATGTTTGTCCCAACGTCCCCGCATTCCGTCCGGAAGGT
TACTAACTCCGAATAAAGAAAGATGGACAGCAGGAAAGAAAGAGGTGACA
TCCAAACAACCGATCCTCAATATACAACACATCTTTTTGTATTCCTTCTG
GTGCCGGGCTTAATTTAATCCAAATCCTACTTGTTGGAGCAGG
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Coding sequence (CDS) from alignment at chr12:220900..224092+

>NO12G00610.1 ID=NO12G00610.1|Name=NO12G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr12:220900..224092+ (Nannochloropsis oceanica)
ATGAGCAAGTCCTCCTTCATATGTGTCCTGGCTACGGCTGCGGCCATGCT
GGCCGCCACCACCCAGGCGTTTGTCCTCCCAACCAGCCGGCTATTGGGGA
CATCGTCGTTGAAAATGATGGCCGCCGGCACAACCCAGGCAGGCGAGAAA
AAGGCCTTGACTGTGGCGGATGTGAAGACGAGGCTCATAGAAAAGATCAC
CTCCGACCCGAACATGAAGCTGCCCGACCAGTTCCAGCAAGCGTTGACCG
ACATTTTGGACGGCATGACTGAAGTGGCAGAAAACACGGGCCTGGACCCC
GAGAAGTACCAAGAAATGCTGGGGTTGCTCATGAAGGAGGCAGCAGAGAA
CTCCCGGTCCTTGTATCAGTTCGAGCCGTTCCACAAAAACATCCGGGGTC
CTGTGGACTTCACGGCATTTGGAGAAAATTTCTTTGACATCCTTTGCGTC
AAGGAGCAAAGCGGAGTCTTGGGCCGGAAGAACATGGCCAAAATCGTCGA
CTACGTCCGACAAGGACACAACGTGGTGCTCCTGGCCAACCATCAGACGG
AGCCCGATCCCTACATCCTCCGGTCGGCCTTCAAGCGCCTGGTGCCGGCG
GATGATCCTCTGCTGGACCGGCTGGTGTTCGTGGCTGGCGCGAAAGTACG
CACGGATTTGTTCACCATCCCCTTCTCCAAGGGACTGAATTTGATATGCA
TCCACTCCAAGAAGTACATCGAGGACGACCCCGCCACCAAGCCCCTCAAG
ACACAAGAGAATTTGGCTGCCATGAAGGCCCTGCAAGGCCTCATCGTCGA
AGGCGGACACATTCTCTGGGTTGCGCCCTCCGGCGGCCGAGACCGGACGG
ACGTTCACACGGGGAAGATGGCCGTGGCTCCCTTCGACTCCCGCGCGGTG
GATATGTTCCGGGTCTTGAGCACCAAGAGCCAGCACCCTACCCACTTCTT
TCCCTTGTCCATGCTGACGGCGCAGGTCCTTCCCCCTCCAGCCAAAGTGG
CCATGGAGGTGGGTGAACGTCGGCTGGTGGCGCGCCGACCCGTGCATGTG
TATTTTGGGGATGAGCTAACCCCTGAACGGGTGGGAAGTGAATTTGTGGC
ACGAAAGATGAAGGACGGCACGGCGGAAGGTTTGACGGAGGAGGAGCTGA
TGAAGAAGGCGGGGAAGGAGGGTTTTACCTATGTGGCGGAGGGGGATGTC
AAGAGGCATTATGATGTGCTTATGGGCCTGGATCTGGTGTTGGAGGAAGA
GGAGGTGTCTGTGCAGTACCATTAA
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Synonyms
Publications