NO12G00590.1, NO12G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00590.1
Unique NameNO12G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2182
Alignment locationchr12:216028..218589 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:216028..218589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00590.1 vs.
Match: XP_009038702.1 (hypothetical protein AURANDRAFT_71976 [Aureococcus anophagefferens]; EGB06524.1 hypothetical protein AURANDRAFT_71976 [Aureococcus anophagefferens])

HSP 1 Score: 97.8 bits (242), Expect = 1.400e-16
Identity = 63/169 (37.28%), Postives = 86/169 (50.89%), Query Frame = 0 
Query:   64 PAQREEKEAYMQQLENEGKVPEGKVLIRPKAGFVIKTFRMVMEGAEENGGGERDRVAEPKHKTKVFVNIVSSDKLARPTATGDPSSVKGKAGKMITVPNVVGPSRMEEDNKGASVPTVDFCVHPYAVHLALSSSSSSSPSLLGGGGEGGGGGGRGRGFKDLLVEMALES 233
            P  REE+  Y++++E +G+ P+GK LI PKAGFV+KT +M          G+ D         KVF+NIVSS+KL  P AT          G    +P+++GP RME D K A+V T D C HP AV  A +S                      + F+DLL + A+ES
Sbjct: 1333 PKYREEQNQYIREMEAKGETPKGKALIHPKAGFVVKTRKM----------GKADHTG-----AKVFINIVSSEKLQEPEAT------PCDGGSRWALPHLLGPPRMERDKKDATVSTFDCCFHPAAVQRANAS----------------------KPFRDLLAQTAIES 1458
The following BLAST results are available for this feature:
BLAST of NO12G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009038702.11.400e-1637.28hypothetical protein AURANDRAFT_71976 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00590NO12G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00590.1NO12G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00590.1.cds1NO12G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00590.1.cds2NO12G00590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00590.1 ID=NO12G00590.1|Name=NO12G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
CAGATTGGAGCTATTAAGACGAGGGGTTTACGCTTAGAGAGTCGTCCACG
CTTTTGCATCGCTCTCCATACGCGCCTTGCTTCCCCCTCCCTCCCTCCCT
TCCGTCACCTCCCTACCTAAAATGGCGGCGGAAGAAGAAAAGGACATCGC
CGCACTATCCCACATCATCAACGGCAGTCCAGGCACTGACAATATCAACC
CACCCACGCCCGAGGAGTCCGAGGCATTGGTGCGGATACTACAGGAAAAG
CCTAGTCTGATTTCTAAACTCGCAGAGACCCTGTCACCTTGCCGCCATGC
CGCCCCTAGCCCTGCACAACGAGAGGAAAAGGAAGCTTACATGCAACAAT
TGGAAAATGAAGGCAAAGTGCCTGAGGGAAAGGTTCTGATTCGACCCAAG
GCGGGCTTTGTTATCAAGACGTTCAGGATGGTGATGGAAGGAGCAGAGGA
GAATGGGGGAGGGGAGAGGGACCGTGTGGCCGAGCCGAAGCATAAGACGA
AAGTATTCGTTAACATCGTCTCTTCGGACAAGCTTGCTCGCCCCACTGCT
ACCGGGGATCCTTCTTCCGTAAAGGGAAAGGCAGGAAAAATGATCACGGT
TCCAAACGTGGTGGGGCCATCACGCATGGAGGAAGACAATAAAGGCGCCT
CAGTTCCTACAGTTGATTTCTGCGTGCATCCTTATGCGGTCCACCTGGCC
TTATCTTCCTCTTCCTCGTCTTCTCCTTCTCTTCTTGGTGGAGGTGGAGA
AGGAGGGGGGGGGGGAGGTAGAGGAAGAGGGTTCAAGGATTTGCTGGTGG
AGATGGCCTTGGAGAGTGCGGTCAGGTTGTGGCAAGCGGAGGAGGATAGG
AAGGAAGGGAGGGCGGGAGGGAAAACGGTTGACAAGAAAAGGATGAGGAG
GAGGAGGATTGAAGTGGATGAACAGTACATAGTCTTGAAGGGCTGTAGAT
ACAAGATTGTGGAGCAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGCGTG
GACCTGGCTGCAGTCATGGTGATGGATGCCCCAAACTCTCGTCTGCGCGC
TCGTTCCTCTCGGCCTCATTCCCTATTGCTGAAGGTGGTCTTGCCAGAGG
TAGGGAGGGAGGGAGGGAAGGAGGGAGGGTGGGTGGAGGAGGCATGGTCC
GTGGCGGTTGCGGAGAAAGAGCTGCTGGTCGAGAGCCGGATTTTTGAAGA
GAAGGAGGGAGGTAGGAAGGGATTTAGGGAGGGAGGGAGGAAGTACATGC
AGAGGGTGAAGCTGCCTTACCCTGTTCGGACGGAGGAGGAGATGGGGGAG
GAAGGGAGGGAGGAGGGGGTGATGATGGCGAGGGTGGTGGTGGAGGACGG
AAGGAAGGGAGGGGCGGCAAGGCGATTGTTGGTAGTTAGACTGCTGGTGA
AGAAAAAGGAAGATCAGGTGGTACAGTTTGATCAGCCGACGGTAGTATGG
GAGGAAGGGAAGGAAGGAGGTAGGGAGGAGGAGAAGGAGGGAGGGAAGGA
GGAGAAGGAGGAGGAAAGAGTAGAAGGAGGAGGAGGGAAGAATCATGAGC
GATGGGTAGCACTGGCGCCGGAAAGTGGTATTGACCTCGCTAGTTTGAAT
ATCCAAGGAGGAGAAGGCGGAGCGAAGGAGAGGGTTGATGACGAGAAGGG
GGGTAAGCATCTCTCGATCCTCCCCGCTATGAAGGAGGTTGGTGAGAGAC
ATGGCGGGCAATTGCAGCAGCAGCAGCAGCAGCAACAACAGCAACACGGG
GAGGAGGAGCAGCAGCGTCTACACCCACCTAATCGGCTGGACGGTAGAAG
GGAGGATGGGGTACTACAACCGGACTATGAGATGACGGAGGAAGAGACAC
ATTTCTCTCTCTTGTTTTCAGTCCCAGGCATCGATGTTTCCTCAGTCCAA
GTCACTTGCAGCAGTTGCAGCAGCAGTAGCAGTGAAGGCACGATGAATGT
TGTCTTCTCTTCTTCCTCTACCTCATCCTCCTCTTTTCCTCTCTCCTTGT
CGACTGCCTGGTCTTTGTCCCTGGCCCTTCCCAAGCCCTTGGGCCTCTCG
TCGGAATGTACCTGGCAGGTGTCCAGCGAGAACATGTGGCTGAGGGTGCC
TAAAAGGGCCACGGGAAGAGCGGAAATGATGCAGAAAAAGCCACTATTGA
CGAGCCCGCACATATTCGCGATGTGTGAGTAG
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protein sequence of NO12G00590.1

>NO12G00590.1-protein ID=NO12G00590.1-protein|Name=NO12G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MAAEEEKDIAALSHIINGSPGTDNINPPTPEESEALVRILQEKPSLISKL
AETLSPCRHAAPSPAQREEKEAYMQQLENEGKVPEGKVLIRPKAGFVIKT
FRMVMEGAEENGGGERDRVAEPKHKTKVFVNIVSSDKLARPTATGDPSSV
KGKAGKMITVPNVVGPSRMEEDNKGASVPTVDFCVHPYAVHLALSSSSSS
SPSLLGGGGEGGGGGGRGRGFKDLLVEMALESAVRLWQAEEDRKEGRAGG
KTVDKKRMRRRRIEVDEQYIVLKGCRYKIVEQGGGREGGREGVDLAAVMV
MDAPNSRLRARSSRPHSLLLKVVLPEVGREGGKEGGWVEEAWSVAVAEKE
LLVESRIFEEKEGGRKGFREGGRKYMQRVKLPYPVRTEEEMGEEGREEGV
MMARVVVEDGRKGGAARRLLVVRLLVKKKEDQVVQFDQPTVVWEEGKEGG
REEEKEGGKEEKEEERVEGGGGKNHERWVALAPESGIDLASLNIQGGEGG
AKERVDDEKGGKHLSILPAMKEVGERHGGQLQQQQQQQQQQHGEEEQQRL
HPPNRLDGRREDGVLQPDYEMTEEETHFSLLFSVPGIDVSSVQVTCSSCS
SSSSEGTMNVVFSSSSTSSSSFPLSLSTAWSLSLALPKPLGLSSECTWQV
SSENMWLRVPKRATGRAEMMQKKPLLTSPHIFAMCE*
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mRNA from alignment at chr12:216028..218589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00590.1 ID=NO12G00590.1|Name=NO12G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2562bp|location=Sequence derived from alignment at chr12:216028..218589- (Nannochloropsis oceanica)
CAGATTGGAGCTATTAAGACGAGGGGTTTACGCTTAGAGAGTCGTCCACG
CTTTTGCATCGCTCTCCATACGCGCCTTGCTTCCCCCTCCCTCCCTCCCT
TCCGTCACCTCCCTACCTAAAATGGCGGCGGAAGAAGAAAAGGACATCGC
CGCACTATCCCACATCATCAACGGCAGTCCAGGCACTGACAATATCAACC
CACCCACGCCCGAGGAGTCCGAGGCATTGGTGCGGATACTACAGGAAAAG
CCTAGTCTGATTTCTAAACTCGCAGAGACCCTGTCACCTTGCCGCCATGC
CGCCCCTAGCCCTGCACAACGAGAGGAAAAGGAAGCTTACATGCAACAAT
TGGAAAATGAAGGCAAAGTGCCTGAGGGAAAGGTTCTGATTCGACCCAAG
GCGGGCTTTGTTATCAAGACGTTCAGGATGGTGATGGAAGGAGCAGAGGA
GAATGGGGGAGGGGAGAGGGACCGTGTGGCCGAGCCGAAGCATAAGACGA
AAGTATTCGTTAACATCGTCTCTTCGGACAAGCTTGCTCGCCCCACTGCT
ACCGGGGATCCTTCTTCCGTAAAGGGAAAGGCAGGAAAAATGATCACGGT
TCCAAACGTGGTGGGGCCATCACGCATGGAGGAAGACAATAAAGGCGCCT
CAGTTCCTACAGTTGATTTCTGCGTGCATCCTTATGCGGTCCACCTGGCC
TTATCTTCCTCTTCCTCGTCTTCTCCTTCTCTTCTTGGTGGAGGTGGAGA
AGGAGGGGGGGGGGGAGGTAGAGGAAGAGGGTTCAAGGATTTGCTGGTGG
AGATGGCCTTGGAGAGTGCGGTCAGGTTGTGGCAAGCGGAGGAGGATAGG
AAGGAAGGGAGGGCGGGAGGGAAAACGGTTGACAAGAAAAGGATGAGGAG
GAGGAGGATTGAAGTGGATGAACAGTACATAGTCTTGAAGGGCTGTAGAT
ACAAGGTGGGGAAAGAGCCCTCGACGCTCGTCGTGGACTCGAAATCCTTG
GCCTCCCTCTGTCCCTCCCTCTGTCCCTCCCTTTCTTCCTCCCTTCCTCC
CTCCACGTCGCCCCCCCCTCCCATGATCCTTGCTCCGCCTAACAGCAGCG
TTAGAGCAGCAACAGCAGCAGCAGAAGCAAAAGAAGCAAGGATCATTGAG
CACTCAAGGAAAATGCAGACAAAAGCGGCGGGGGGGGGGGCGAGGACGAT
GAGGAGGAGGAGACGAAGGATGAGGGCCTTCGCTCTCCTGTCTCTTCAGA
CCCCAGATGCACTATCTCTTCTTCCACCTCCCCTTCTTCCGTCGCTCCCT
CCTCCGTTGCAGTCTACCCTCTCTCCGACGTCAAGATTGTGGAGCAGGGA
GGAGGGAGGGAGGGAGGGAGGGAGGGCGTGGACCTGGCTGCAGTCATGGT
GATGGATGCCCCAAACTCTCGTCTGCGCGCTCGTTCCTCTCGGCCTCATT
CCCTATTGCTGAAGGTGGTCTTGCCAGAGGTAGGGAGGGAGGGAGGGAAG
GAGGGAGGGTGGGTGGAGGAGGCATGGTCCGTGGCGGTTGCGGAGAAAGA
GCTGCTGGTCGAGAGCCGGATTTTTGAAGAGAAGGAGGGAGGTAGGAAGG
GATTTAGGGAGGGAGGGAGGAAGTACATGCAGAGGGTGAAGCTGCCTTAC
CCTGTTCGGACGGAGGAGGAGATGGGGGAGGAAGGGAGGGAGGAGGGGGT
GATGATGGCGAGGGTGGTGGTGGAGGACGGAAGGAAGGGAGGGGCGGCAA
GGCGATTGTTGGTAGTTAGACTGCTGGTGAAGAAAAAGGAAGATCAGGTG
GTACAGTTTGATCAGCCGACGGTAGTATGGGAGGAAGGGAAGGAAGGAGG
TAGGGAGGAGGAGAAGGAGGGAGGGAAGGAGGAGAAGGAGGAGGAAAGAG
TAGAAGGAGGAGGAGGGAAGAATCATGAGCGATGGGTAGCACTGGCGCCG
GAAAGTGGTATTGACCTCGCTAGTTTGAATATCCAAGGAGGAGAAGGCGG
AGCGAAGGAGAGGGTTGATGACGAGAAGGGGGGTAAGCATCTCTCGATCC
TCCCCGCTATGAAGGAGGTTGGTGAGAGACATGGCGGGCAATTGCAGCAG
CAGCAGCAGCAGCAACAACAGCAACACGGGGAGGAGGAGCAGCAGCGTCT
ACACCCACCTAATCGGCTGGACGGTAGAAGGGAGGATGGGGTACTACAAC
CGGACTATGAGATGACGGAGGAAGAGACACATTTCTCTCTCTTGTTTTCA
GTCCCAGGCATCGATGTTTCCTCAGTCCAAGTCACTTGCAGCAGTTGCAG
CAGCAGTAGCAGTGAAGGCACGATGAATGTTGTCTTCTCTTCTTCCTCTA
CCTCATCCTCCTCTTTTCCTCTCTCCTTGTCGACTGCCTGGTCTTTGTCC
CTGGCCCTTCCCAAGCCCTTGGGCCTCTCGTCGGAATGTACCTGGCAGGT
GTCCAGCGAGAACATGTGGCTGAGGGTGCCTAAAAGGGCCACGGGAAGAG
CGGAAATGATGCAGAAAAAGCCACTATTGACGAGCCCGCACATATTCGCG
ATGTGTGAGTAG
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Coding sequence (CDS) from alignment at chr12:216028..218589-

>NO12G00590.1 ID=NO12G00590.1|Name=NO12G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=2061bp|location=Sequence derived from alignment at chr12:216028..218589- (Nannochloropsis oceanica)
ATGGCGGCGGAAGAAGAAAAGGACATCGCCGCACTATCCCACATCATCAA
CGGCAGTCCAGGCACTGACAATATCAACCCACCCACGCCCGAGGAGTCCG
AGGCATTGGTGCGGATACTACAGGAAAAGCCTAGTCTGATTTCTAAACTC
GCAGAGACCCTGTCACCTTGCCGCCATGCCGCCCCTAGCCCTGCACAACG
AGAGGAAAAGGAAGCTTACATGCAACAATTGGAAAATGAAGGCAAAGTGC
CTGAGGGAAAGGTTCTGATTCGACCCAAGGCGGGCTTTGTTATCAAGACG
TTCAGGATGGTGATGGAAGGAGCAGAGGAGAATGGGGGAGGGGAGAGGGA
CCGTGTGGCCGAGCCGAAGCATAAGACGAAAGTATTCGTTAACATCGTCT
CTTCGGACAAGCTTGCTCGCCCCACTGCTACCGGGGATCCTTCTTCCGTA
AAGGGAAAGGCAGGAAAAATGATCACGGTTCCAAACGTGGTGGGGCCATC
ACGCATGGAGGAAGACAATAAAGGCGCCTCAGTTCCTACAGTTGATTTCT
GCGTGCATCCTTATGCGGTCCACCTGGCCTTATCTTCCTCTTCCTCGTCT
TCTCCTTCTCTTCTTGGTGGAGGTGGAGAAGGAGGGGGGGGGGGAGGTAG
AGGAAGAGGGTTCAAGGATTTGCTGGTGGAGATGGCCTTGGAGAGTGCGG
TCAGGTTGTGGCAAGCGGAGGAGGATAGGAAGGAAGGGAGGGCGGGAGGG
AAAACGGTTGACAAGAAAAGGATGAGGAGGAGGAGGATTGAAGTGGATGA
ACAGTACATAGTCTTGAAGGGCTGTAGATACAAGATTGTGGAGCAGGGAG
GAGGGAGGGAGGGAGGGAGGGAGGGCGTGGACCTGGCTGCAGTCATGGTG
ATGGATGCCCCAAACTCTCGTCTGCGCGCTCGTTCCTCTCGGCCTCATTC
CCTATTGCTGAAGGTGGTCTTGCCAGAGGTAGGGAGGGAGGGAGGGAAGG
AGGGAGGGTGGGTGGAGGAGGCATGGTCCGTGGCGGTTGCGGAGAAAGAG
CTGCTGGTCGAGAGCCGGATTTTTGAAGAGAAGGAGGGAGGTAGGAAGGG
ATTTAGGGAGGGAGGGAGGAAGTACATGCAGAGGGTGAAGCTGCCTTACC
CTGTTCGGACGGAGGAGGAGATGGGGGAGGAAGGGAGGGAGGAGGGGGTG
ATGATGGCGAGGGTGGTGGTGGAGGACGGAAGGAAGGGAGGGGCGGCAAG
GCGATTGTTGGTAGTTAGACTGCTGGTGAAGAAAAAGGAAGATCAGGTGG
TACAGTTTGATCAGCCGACGGTAGTATGGGAGGAAGGGAAGGAAGGAGGT
AGGGAGGAGGAGAAGGAGGGAGGGAAGGAGGAGAAGGAGGAGGAAAGAGT
AGAAGGAGGAGGAGGGAAGAATCATGAGCGATGGGTAGCACTGGCGCCGG
AAAGTGGTATTGACCTCGCTAGTTTGAATATCCAAGGAGGAGAAGGCGGA
GCGAAGGAGAGGGTTGATGACGAGAAGGGGGGTAAGCATCTCTCGATCCT
CCCCGCTATGAAGGAGGTTGGTGAGAGACATGGCGGGCAATTGCAGCAGC
AGCAGCAGCAGCAACAACAGCAACACGGGGAGGAGGAGCAGCAGCGTCTA
CACCCACCTAATCGGCTGGACGGTAGAAGGGAGGATGGGGTACTACAACC
GGACTATGAGATGACGGAGGAAGAGACACATTTCTCTCTCTTGTTTTCAG
TCCCAGGCATCGATGTTTCCTCAGTCCAAGTCACTTGCAGCAGTTGCAGC
AGCAGTAGCAGTGAAGGCACGATGAATGTTGTCTTCTCTTCTTCCTCTAC
CTCATCCTCCTCTTTTCCTCTCTCCTTGTCGACTGCCTGGTCTTTGTCCC
TGGCCCTTCCCAAGCCCTTGGGCCTCTCGTCGGAATGTACCTGGCAGGTG
TCCAGCGAGAACATGTGGCTGAGGGTGCCTAAAAGGGCCACGGGAAGAGC
GGAAATGATGCAGAAAAAGCCACTATTGACGAGCCCGCACATATTCGCGA
TGTGTGAGTAG
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Synonyms
Publications