NO12G00540.1, NO12G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00540.1
Unique NameNO12G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2295
Alignment locationchr12:199997..203337 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:199997..203337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00540.1 vs.
Match: EWM25961.1 (nodulin 21 -like transporter family protein [Nannochloropsis gaditana])

HSP 1 Score: 441.8 bits (1135), Expect = 2.500e-120
Identity = 265/430 (61.63%), Postives = 312/430 (72.56%), Query Frame = 0
Query:    3 ESITLLEDGMTPAGKAASMSISASGGGNGETSGDASTPSTVNSDADVDSKSKGCFTNACCVHPLLVLVQFIFSGYHVLTSSALKTKGVDPLVFALYRELSASALMAMCASMAVWKGKHNWHLKKEHVPRFLAMGLFSAGNVLGAVQSLTLISPTNFSVLQPSIPVFTMMLSVLFRMEKLTPIKTLGLLAAVAGAVVVEVVH---------SPIPGTGEKASQADFIAGNVIVILQCLSMASLLVFQKKALLFYHPTIVTAWYYSIGSILTLLICLSKSLPASAYALSSSLAPWLALAYAAIFGTAFNYNAYSWAGTVVVPAVISIYSTLQPLGTALLSFVFLGDKVTGGEAGGGVLVVLGLIGTVWGRERERERKAGKENEEKRGNEEEEVVQGRGAGEGEEGMEGMVAGGGGGRGGTASYGLTGRRDSK 424
            ES TLL+D MTP  ++ S +         +T+   ++ +T  +  D  +  K CF   C VHPL+VLVQ IFSGYHVLTSSALKTKGV+PLVFALYRELSAS  MA+ A +AVW+GKH W L+  H+PRFLA+GLFSAGNVLGAVQ+LTLI+PTNFSVLQPSIPVFTM+LSVLFRME+LTP+K LGLLAAVAGAVVVEVVH             G    +S+ADFI+GNVIV+LQCLSMASLLVFQK AL  YHPT+VTAWYYSIGS+LTL+IC+S+SLP+SAYALS+S APWLALAYAA+ GTAFNYNAYSWAGTVV P +ISIYSTLQP+GTALLS +FL   +TGGE GGG +   GL     GR        G  + E+   E  E  +G G G G  G  G     G GRG  AS+  T  R+ +
Sbjct:   22 ESATLLKDAMTPESQSPSSTAEVQ-----DTACKDASNATAGTMGDFATVFKKCFAKTCFVHPLMVLVQVIFSGYHVLTSSALKTKGVNPLVFALYRELSASLFMALYACVAVWRGKHRWQLETRHIPRFLALGLFSAGNVLGAVQALTLITPTNFSVLQPSIPVFTMLLSVLFRMERLTPLKALGLLAAVAGAVVVEVVHPAGISGQEGGESEGGDGSSSRADFISGNVIVLLQCLSMASLLVFQKTALTHYHPTVVTAWYYSIGSVLTLIICVSQSLPSSAYALSTSPAPWLALAYAALLGTAFNYNAYSWAGTVVAPGIISIYSTLQPVGTALLSVLFLHATITGGEMGGGGIGHSGL-----GR-----NGVGTSDGEEGVGEAREAGEGGGGGFGGPGERGGNGRDGIGRGEGASFLRTYGREGQ 436          
The following BLAST results are available for this feature:
BLAST of NO12G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25961.12.500e-12061.63nodulin 21 -like transporter family protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00540NO12G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00540.1NO12G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00540.1.cds1NO12G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00540.1.cds2NO12G00540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00540.1 ID=NO12G00540.1|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2295bp
AGCAACTATATACCTTTTTTCCTCCTTCTTCTCTTTCTTCATCTTTATTT
TATGCTTCGTCATTTTCTTTACAAACCTATTAAGACCAAGCTCTACGTGG
TAGGGCAGGCGGGTACGAAGCACCCATTTTTTGGCGTGCCACTTGCATGG
TGCCCTTGTTTGGGATGTTGAGAAATGGAGGAGGAGTTACTTATACAGTC
GTCACAATTATTGACCTTACAGCATTCTCTGAAGGTTTTCGATCGTGAAT
ATCTATTTATGTATTCATGCAATGCCTTCGAAGGCACTGTATTGTTGAGA
GCGGAGTCCCATGACCCCATTCTTATTTCCTCGGCCTTGACCAGCACCGG
AAAAGGCACGCTTAGGGGCAGGCAAATCATCGTATGCTTGCCTGCGTTTA
TAATACTGATCAATCGTTTCCGCCCCACAGCCACAGGAGCCGTCCACATT
TGTTGTGCTCCACTCCTTGGCATCTACGCCCCAAAACCGCCTCCTGCGGC
ACGAAGCATCCTCTTTCTCCCCGTCTCGGTCTGGCACCAACAAGGGATAC
AATCAGTAAGACCATCAAAAGGCCATGGATGAATCGATAACACTTTTGGA
GGATGGCATGACGCCCGCCGGCAAGGCCGCCTCCATGTCCATTTCTGCCT
CTGGAGGCGGCAACGGGGAGACCAGCGGAGATGCAAGCACGCCCAGCACT
GTCAATAGTGATGCTGATGTGGATAGCAAGAGTAAAGGTTGCTTTACCAA
CGCCTGCTGTGTGCATCCATTGTTAGTGCTGGTGCAATTCATTTTCTCGG
GTTACCACGTGTTGACCTCAAGCGCCCTCAAAACCAAGGGTGTTGACCCG
TTGGTCTTTGCACTGTATCGGGAGCTGAGTGCATCGGCGTTGATGGCGAT
GTGCGCCAGCATGGCCGTATGGAAGGGGAAGCACAACTGGCACCTAAAAA
AGGAGCATGTCCCACGTTTTCTCGCCATGGGTCTCTTTTCCGCTGGGAAC
GTCCTGGGTGCAGTGCAATCACTCACCCTCATCTCGCCGACTAATTTCTC
GGTATTACAACCGTCCATCCCAGTCTTCACCATGATGCTCTCCGTCCTCT
TCCGCATGGAAAAACTCACCCCCATCAAGACCCTGGGCCTCCTAGCCGCC
GTTGCGGGCGCAGTGGTCGTGGAAGTAGTCCACTCACCCATACCCGGAAC
AGGCGAGAAAGCGAGCCAAGCGGACTTTATTGCCGGAAACGTCATCGTCA
TCCTTCAATGCCTCTCCATGGCCTCCCTCCTGGTCTTTCAAAAAAAAGCC
CTTCTCTTCTACCACCCCACCATCGTGACGGCCTGGTACTACAGCATTGG
CTCCATTCTCACCCTCCTCATTTGCCTTTCCAAGTCCCTCCCCGCCTCCG
CTTACGCCCTCTCGTCTTCCCTCGCCCCCTGGCTTGCTCTTGCCTATGCC
GCCATATTCGGAACAGCTTTTAACTATAATGCGTACAGCTGGGCAGGGAC
GGTGGTGGTCCCCGCAGTGATATCAATTTATTCAACGCTGCAGCCGTTGG
GGACCGCACTTCTGTCTTTCGTCTTTTTGGGGGACAAGGTCACGGGGGGC
GAGGCGGGCGGAGGAGTGTTGGTGGTGCTGGGGCTGATCGGAACGGTGTG
GGGGAGGGAGAGGGAGAGGGAGAGGAAGGCGGGAAAGGAGAACGAAGAGA
AGAGGGGAAATGAGGAGGAGGAGGTAGTGCAGGGAAGGGGGGCAGGGGAG
GGGGAGGAAGGGATGGAGGGCATGGTGGCTGGAGGAGGGGGAGGAAGAGG
AGGAACGGCCTCTTACGGCTTGACAGGAAGGAGAGACAGTAAGTCACAGC
CTTTGGTACAGGAGCAGGGAGGGGAAATAGAGGAGAGAGGGAGGAAGGGA
AGGGTGGCTATTTGACGGTGGTGGCTGAGTTTCCTCCCTGGCGTGGAGAA
GGACAAAGGATGGTGAGGATTTAAGATCCCCTCTTGACTTCGTGGCTCTA
ATGGAATCGATGGAGGGAAAGGGGAGCGAAGCGGCTGTTATAATGTGACG
TTCATATGAAGCTCTATTAAAAGGTATGAGGAGCAACAAAATGTAAATTT
GGCAAATTTAAGTGTGCGTGGCCTTGAAGGACGCGCGGACAGTGTGTGTA
TGACTTGATGAAAGGGAGCAACAGCGAAGGAGAAAGAAGGCGGGTGAAGG
GGACAGCGGCCCATCTAGCCGACCGCTGTACAGACGAGATCAAACATAAC
AAAGTATGATAAAGTAATTCAAGAAATAAAATCATTATATTTTTC
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protein sequence of NO12G00540.1

>NO12G00540.1-protein ID=NO12G00540.1-protein|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MDESITLLEDGMTPAGKAASMSISASGGGNGETSGDASTPSTVNSDADVD
SKSKGCFTNACCVHPLLVLVQFIFSGYHVLTSSALKTKGVDPLVFALYRE
LSASALMAMCASMAVWKGKHNWHLKKEHVPRFLAMGLFSAGNVLGAVQSL
TLISPTNFSVLQPSIPVFTMMLSVLFRMEKLTPIKTLGLLAAVAGAVVVE
VVHSPIPGTGEKASQADFIAGNVIVILQCLSMASLLVFQKKALLFYHPTI
VTAWYYSIGSILTLLICLSKSLPASAYALSSSLAPWLALAYAAIFGTAFN
YNAYSWAGTVVVPAVISIYSTLQPLGTALLSFVFLGDKVTGGEAGGGVLV
VLGLIGTVWGRERERERKAGKENEEKRGNEEEEVVQGRGAGEGEEGMEGM
VAGGGGGRGGTASYGLTGRRDSKSQPLVQEQGGEIEERGRKGRVAI*
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mRNA from alignment at chr12:199997..203337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00540.1 ID=NO12G00540.1|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3341bp|location=Sequence derived from alignment at chr12:199997..203337+ (Nannochloropsis oceanica)
AGCAACTATATACCTTTTTTCCTCCTTCTTCTCTTTCTTCATCTTTATTT TATGCTTCGTCATTTTCTTTACAAACCTATTAAGACCAAGCTCTACGTGG TAGGGCAGGCGGGTACGAAGCACCCATTTTTTGGCGTGCCACTTGCATGG TGCCCTTGTTTGGGATGTTGAGAAATGGAGGAGGAGTTACTTATACAGTC GTCACAATTATTGACCTTACAGCATTCTCTGAAGGTTTTCGATCGTGAAT ATCTATTTATGTATTCATGCAATGCCTTCGAAGGCACTGTATTGTTGAGA GCGGAGTCCCATGACCCCATTCTTATTTCCTCGGCCTTGACCAGCACCGG AAAAGGCACGCTTAGGGGCAGGCAAATCATCGTATGCTTGCCTGCGTTTA TAATACTGATCAATCGTTTCCGCCCCACAGCCACAGGAGCCGTCCACATT TTGTTGTGCTCCACTCCTTGGCATCTACGCCCCAAAACCGCCTCCTGCGG CACGAAGCATCCTCTTTCTCCCCGTCTCGGTCTGGCACCAACAAGGGATA CAATCAGTAAGACCATCAAAAGGCCATGGATGAACCGCTCTAGGCCTTTC CGCTCCTTGCTCCCCCCGCCCTCATCATCCTCTTCCTCATCTACAATAAC GATTTACAGAAATCTTACAAAAGCTCCCACAGCCCTTTGGGAGCCACTAC CTTGGTATACCAGAAGAGTTGTCAAAAGAAAAAGCCGCTCATAATACCAC TGCAACAATACCCAAGAATTGGAAAACCCGAGAAAAGGGAGGAGACACCT GTGTGGGAGGTTTTGTGTATGGCGAAAACCATTCCTGCAAAAACCCACAC TAGCTTAAACCCGCTTACAGTCATATTAGGAGAGAATATTGAAGACACAA CATCTTAAAAATCCACTCAAGGCGCCTGCAGAGACATTGACCAGACTCAG GATGGGGCATGGGGCACGATCGCCGTGGTAGGGCAGGCGGGTACGAAGCA CCCATTTTTTGGCGTGCCACTTGCATGGTGCCCTTGTTTGGGATGTTGAG AAATGGAGGAGGAGTTACTTATACAGTCGTCACAATTATTGACCTTACAG CATTCTCTGAAGGTTTTCGATCGTGAATATCTATTTATGTATTCATGGAA TGCCTTCGAAGGCACTGTATTGTTGAGAGCGGAGTCCCATGACCCCATTC TTATTTCCTCGGCCTTGACCAGCACCGGAAAAGGCACGCTTAGGGGCAGG CAAATCATCGTATGCTTGCCTGCGTTTATAATACTGATCAATCGTTTCCG CCCCACAGCCACAGGAGCCGTCCACATTTGTTGTGCTCCACTCCTTGGCA TCTACGCCCCAAAACCGCCTCCTGCGGCACGAAGCATCCTCTTTCTCCCC GTCTCGGTCTGGCACCAACAAGGGATACAATCAGTAAGACCATCAAAAGG CCATGGATGAATCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGC AAGGCCGCCTCCATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGAC CAGCGGAGATGCAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGG ATAGCAAGAGTAAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTG TTAGTGCTGGTGCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAG CGCCCTCAAAACCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGG AGCTGAGTGCATCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGG AAGGGGAAGCACAAGTATGTAGAGGGTGGGAAATGGAGGGCGAGGACCGC GTGCTTGAATCGTGGTAGTGGTGGTGACAATTGTCTTCCGTCATGCCGCA ATGTTTAACTCGTGTTACTCATCACTCCTACCCCCCTTCTCCCCCCCCTC CCTCCATTCCTTCCCTCTCCTCCTCCCTCCAGCTGGCACCTAAAAAAGGA GCATGTCCCACGTTTTCTCGCCATGGGTCTCTTTTCCGCTGGGAACGTCC TGGGTGCAGTGCAATCACTCACCCTCATCTCGCCGACTAATTTCTCGGTA TTACAACCGTCCATCCCAGTCTTCACCATGATGCTCTCCGTCCTCTTCCG CATGGAAAAACTCACCCCCATCAAGACCCTGGGCCTCCTAGCCGCCGTTG CGGGCGCAGTGGTCGTGGAAGTAGTCCACTCACCCATACCCGGAACAGGC GAGAAAGCGAGCCAAGCGGACTTTATTGCCGGAAACGTCATCGTCATCCT TCAATGCCTCTCCATGGCCTCCCTCCTGGTCTTTCAAAAAAAAGCCCTTC TCTTCTACCACCCCACCATCGTGACGGCCTGGTACTACAGCATTGGCTCC ATTCTCACCCTCCTCATTTGCCTTTCCAAGTCCCTCCCCGCCTCCGCTTA CGCCCTCTCGTCTTCCCTCGCCCCCTGGCTTGCTCTTGCCTATGCCGCCA TATTCGGAACAGCTTTTAACTATAATGCGTACAGCTGGGCAGGGACGGTG GTGGTCCCCGCAGTGATATCAATTTATTCAACGCTGCAGCCGTTGGGGAC CGCACTTCTGTCTTTCGTCTTTTTGGGGGACAAGGTCACGGGGGGCGAGG CGGGCGGAGGAGTGTTGGTGGTGCTGGGGCTGATCGGAACGGTGTGGGGG AGGGAGAGGGAGAGGGAGAGGAAGGCGGGAAAGGAGAACGAAGAGAAGAG GGGAAATGAGGAGGAGGAGGTAGTGCAGGGAAGGGGGGCAGGGGAGGGGG AGGAAGGGATGGAGGGCATGGTGGCTGGAGGAGGGGGAGGAAGAGGAGGA ACGGCCTCTTACGGCTTGACAGGAAGGAGAGACAGTAAGTCACAGCCTTT GGTACAGGAGCAGGGAGGGGAAATAGAGGAGAGAGGGAGGAAGGGAAGGG TGGCTATTTGACGGTGGTGGCTGAGTTTCCTCCCTGGCGTGGAGAAGGAC AAAGGATGGTGAGGATTTAAGATCCCCTCTTGACTTCGTGGCTCTAATGG AATCGATGGAGGGAAAGGGGAGCGAAGCGGCTGTTATAATGTGACGTTCA TATGAAGCTCTATTAAAAGGTATGAGGAGCAACAAAATGTAAATTTGGCA AATTTAAGTGTGCGTGGCCTTGAAGGACGCGCGGACAGTGTGTGTATGAC TTGATGAAAGGGAGCAACAGCGAAGGAGAAAGAAGGCGGGTGAAGGGGAC AGCGGCCCATCTAGCCGACCGCTGTACAGACGAGATCAAACATAACAAAG TATGATAAAGTAATTCAAGAAATAAAATCATTATATTTTTC
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Coding sequence (CDS) from alignment at chr12:199997..203337+

>NO12G00540.1 ID=NO12G00540.1|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr12:199997..203337+ (Nannochloropsis oceanica)
ATGGATGAATCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGCAA
GGCCGCCTCCATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGACCA
GCGGAGATGCAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGGAT
AGCAAGAGTAAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTGTT
AGTGCTGGTGCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAGCG
CCCTCAAAACCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGGAG
CTGAGTGCATCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGGAA
GGGGAAGCACAACTGGCACCTAAAAAAGGAGCATGTCCCACGTTTTCTCG
CCATGGGTCTCTTTTCCGCTGGGAACGTCCTGGGTGCAGTGCAATCACTC
ACCCTCATCTCGCCGACTAATTTCTCGGTATTACAACCGTCCATCCCAGT
CTTCACCATGATGCTCTCCGTCCTCTTCCGCATGGAAAAACTCACCCCCA
TCAAGACCCTGGGCCTCCTAGCCGCCGTTGCGGGCGCAGTGGTCGTGGAA
GTAGTCCACTCACCCATACCCGGAACAGGCGAGAAAGCGAGCCAAGCGGA
CTTTATTGCCGGAAACGTCATCGTCATCCTTCAATGCCTCTCCATGGCCT
CCCTCCTGGTCTTTCAAAAAAAAGCCCTTCTCTTCTACCACCCCACCATC
GTGACGGCCTGGTACTACAGCATTGGCTCCATTCTCACCCTCCTCATTTG
CCTTTCCAAGTCCCTCCCCGCCTCCGCTTACGCCCTCTCGTCTTCCCTCG
CCCCCTGGCTTGCTCTTGCCTATGCCGCCATATTCGGAACAGCTTTTAAC
TATAATGCGTACAGCTGGGCAGGGACGGTGGTGGTCCCCGCAGTGATATC
AATTTATTCAACGCTGCAGCCGTTGGGGACCGCACTTCTGTCTTTCGTCT
TTTTGGGGGACAAGGTCACGGGGGGCGAGGCGGGCGGAGGAGTGTTGGTG
GTGCTGGGGCTGATCGGAACGGTGTGGGGGAGGGAGAGGGAGAGGGAGAG
GAAGGCGGGAAAGGAGAACGAAGAGAAGAGGGGAAATGAGGAGGAGGAGG
TAGTGCAGGGAAGGGGGGCAGGGGAGGGGGAGGAAGGGATGGAGGGCATG
GTGGCTGGAGGAGGGGGAGGAAGAGGAGGAACGGCCTCTTACGGCTTGAC
AGGAAGGAGAGACAGTAAGTCACAGCCTTTGGTACAGGAGCAGGGAGGGG
AAATAGAGGAGAGAGGGAGGAAGGGAAGGGTGGCTATTTGA
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Synonyms
Publications