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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:199997..203337 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00540.1 vs.
Match: EWM25961.1 (nodulin 21 -like transporter family protein [Nannochloropsis gaditana]) HSP 1 Score: 441.8 bits (1135), Expect = 2.500e-120 Identity = 265/430 (61.63%), Postives = 312/430 (72.56%), Query Frame = 0
Query: 3 ESITLLEDGMTPAGKAASMSISASGGGNGETSGDASTPSTVNSDADVDSKSKGCFTNACCVHPLLVLVQFIFSGYHVLTSSALKTKGVDPLVFALYRELSASALMAMCASMAVWKGKHNWHLKKEHVPRFLAMGLFSAGNVLGAVQSLTLISPTNFSVLQPSIPVFTMMLSVLFRMEKLTPIKTLGLLAAVAGAVVVEVVH---------SPIPGTGEKASQADFIAGNVIVILQCLSMASLLVFQKKALLFYHPTIVTAWYYSIGSILTLLICLSKSLPASAYALSSSLAPWLALAYAAIFGTAFNYNAYSWAGTVVVPAVISIYSTLQPLGTALLSFVFLGDKVTGGEAGGGVLVVLGLIGTVWGRERERERKAGKENEEKRGNEEEEVVQGRGAGEGEEGMEGMVAGGGGGRGGTASYGLTGRRDSK 424
ES TLL+D MTP ++ S + +T+ ++ +T + D + K CF C VHPL+VLVQ IFSGYHVLTSSALKTKGV+PLVFALYRELSAS MA+ A +AVW+GKH W L+ H+PRFLA+GLFSAGNVLGAVQ+LTLI+PTNFSVLQPSIPVFTM+LSVLFRME+LTP+K LGLLAAVAGAVVVEVVH G +S+ADFI+GNVIV+LQCLSMASLLVFQK AL YHPT+VTAWYYSIGS+LTL+IC+S+SLP+SAYALS+S APWLALAYAA+ GTAFNYNAYSWAGTVV P +ISIYSTLQP+GTALLS +FL +TGGE GGG + GL GR G + E+ E E +G G G G G G G GRG AS+ T R+ +
Sbjct: 22 ESATLLKDAMTPESQSPSSTAEVQ-----DTACKDASNATAGTMGDFATVFKKCFAKTCFVHPLMVLVQVIFSGYHVLTSSALKTKGVNPLVFALYRELSASLFMALYACVAVWRGKHRWQLETRHIPRFLALGLFSAGNVLGAVQALTLITPTNFSVLQPSIPVFTMLLSVLFRMERLTPLKALGLLAAVAGAVVVEVVHPAGISGQEGGESEGGDGSSSRADFISGNVIVLLQCLSMASLLVFQKTALTHYHPTVVTAWYYSIGSVLTLIICVSQSLPSSAYALSTSPAPWLALAYAALLGTAFNYNAYSWAGTVVAPGIISIYSTLQPVGTALLSVLFLHATITGGEMGGGGIGHSGL-----GR-----NGVGTSDGEEGVGEAREAGEGGGGGFGGPGERGGNGRDGIGRGEGASFLRTYGREGQ 436
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00540.1 ID=NO12G00540.1|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2295bp AGCAACTATATACCTTTTTTCCTCCTTCTTCTCTTTCTTCATCTTTATTT TATGCTTCGTCATTTTCTTTACAAACCTATTAAGACCAAGCTCTACGTGG TAGGGCAGGCGGGTACGAAGCACCCATTTTTTGGCGTGCCACTTGCATGG TGCCCTTGTTTGGGATGTTGAGAAATGGAGGAGGAGTTACTTATACAGTC GTCACAATTATTGACCTTACAGCATTCTCTGAAGGTTTTCGATCGTGAAT ATCTATTTATGTATTCATGCAATGCCTTCGAAGGCACTGTATTGTTGAGA GCGGAGTCCCATGACCCCATTCTTATTTCCTCGGCCTTGACCAGCACCGG AAAAGGCACGCTTAGGGGCAGGCAAATCATCGTATGCTTGCCTGCGTTTA TAATACTGATCAATCGTTTCCGCCCCACAGCCACAGGAGCCGTCCACATT TGTTGTGCTCCACTCCTTGGCATCTACGCCCCAAAACCGCCTCCTGCGGC ACGAAGCATCCTCTTTCTCCCCGTCTCGGTCTGGCACCAACAAGGGATAC AATCAGTAAGACCATCAAAAGGCCATGGATGAATCGATAACACTTTTGGA GGATGGCATGACGCCCGCCGGCAAGGCCGCCTCCATGTCCATTTCTGCCT CTGGAGGCGGCAACGGGGAGACCAGCGGAGATGCAAGCACGCCCAGCACT GTCAATAGTGATGCTGATGTGGATAGCAAGAGTAAAGGTTGCTTTACCAA CGCCTGCTGTGTGCATCCATTGTTAGTGCTGGTGCAATTCATTTTCTCGG GTTACCACGTGTTGACCTCAAGCGCCCTCAAAACCAAGGGTGTTGACCCG TTGGTCTTTGCACTGTATCGGGAGCTGAGTGCATCGGCGTTGATGGCGAT GTGCGCCAGCATGGCCGTATGGAAGGGGAAGCACAACTGGCACCTAAAAA AGGAGCATGTCCCACGTTTTCTCGCCATGGGTCTCTTTTCCGCTGGGAAC GTCCTGGGTGCAGTGCAATCACTCACCCTCATCTCGCCGACTAATTTCTC GGTATTACAACCGTCCATCCCAGTCTTCACCATGATGCTCTCCGTCCTCT TCCGCATGGAAAAACTCACCCCCATCAAGACCCTGGGCCTCCTAGCCGCC GTTGCGGGCGCAGTGGTCGTGGAAGTAGTCCACTCACCCATACCCGGAAC AGGCGAGAAAGCGAGCCAAGCGGACTTTATTGCCGGAAACGTCATCGTCA TCCTTCAATGCCTCTCCATGGCCTCCCTCCTGGTCTTTCAAAAAAAAGCC CTTCTCTTCTACCACCCCACCATCGTGACGGCCTGGTACTACAGCATTGG CTCCATTCTCACCCTCCTCATTTGCCTTTCCAAGTCCCTCCCCGCCTCCG CTTACGCCCTCTCGTCTTCCCTCGCCCCCTGGCTTGCTCTTGCCTATGCC GCCATATTCGGAACAGCTTTTAACTATAATGCGTACAGCTGGGCAGGGAC GGTGGTGGTCCCCGCAGTGATATCAATTTATTCAACGCTGCAGCCGTTGG GGACCGCACTTCTGTCTTTCGTCTTTTTGGGGGACAAGGTCACGGGGGGC GAGGCGGGCGGAGGAGTGTTGGTGGTGCTGGGGCTGATCGGAACGGTGTG GGGGAGGGAGAGGGAGAGGGAGAGGAAGGCGGGAAAGGAGAACGAAGAGA AGAGGGGAAATGAGGAGGAGGAGGTAGTGCAGGGAAGGGGGGCAGGGGAG GGGGAGGAAGGGATGGAGGGCATGGTGGCTGGAGGAGGGGGAGGAAGAGG AGGAACGGCCTCTTACGGCTTGACAGGAAGGAGAGACAGTAAGTCACAGC CTTTGGTACAGGAGCAGGGAGGGGAAATAGAGGAGAGAGGGAGGAAGGGA AGGGTGGCTATTTGACGGTGGTGGCTGAGTTTCCTCCCTGGCGTGGAGAA GGACAAAGGATGGTGAGGATTTAAGATCCCCTCTTGACTTCGTGGCTCTA ATGGAATCGATGGAGGGAAAGGGGAGCGAAGCGGCTGTTATAATGTGACG TTCATATGAAGCTCTATTAAAAGGTATGAGGAGCAACAAAATGTAAATTT GGCAAATTTAAGTGTGCGTGGCCTTGAAGGACGCGCGGACAGTGTGTGTA TGACTTGATGAAAGGGAGCAACAGCGAAGGAGAAAGAAGGCGGGTGAAGG GGACAGCGGCCCATCTAGCCGACCGCTGTACAGACGAGATCAAACATAAC AAAGTATGATAAAGTAATTCAAGAAATAAAATCATTATATTTTTC back to topprotein sequence of NO12G00540.1 >NO12G00540.1-protein ID=NO12G00540.1-protein|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp MDESITLLEDGMTPAGKAASMSISASGGGNGETSGDASTPSTVNSDADVD SKSKGCFTNACCVHPLLVLVQFIFSGYHVLTSSALKTKGVDPLVFALYRE LSASALMAMCASMAVWKGKHNWHLKKEHVPRFLAMGLFSAGNVLGAVQSL TLISPTNFSVLQPSIPVFTMMLSVLFRMEKLTPIKTLGLLAAVAGAVVVE VVHSPIPGTGEKASQADFIAGNVIVILQCLSMASLLVFQKKALLFYHPTI VTAWYYSIGSILTLLICLSKSLPASAYALSSSLAPWLALAYAAIFGTAFN YNAYSWAGTVVVPAVISIYSTLQPLGTALLSFVFLGDKVTGGEAGGGVLV VLGLIGTVWGRERERERKAGKENEEKRGNEEEEVVQGRGAGEGEEGMEGM VAGGGGGRGGTASYGLTGRRDSKSQPLVQEQGGEIEERGRKGRVAI* back to topmRNA from alignment at chr12:199997..203337+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00540.1 ID=NO12G00540.1|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3341bp|location=Sequence derived from alignment at chr12:199997..203337+ (Nannochloropsis oceanica) AGCAACTATATACCTTTTTTCCTCCTTCTTCTCTTTCTTCATCTTTATTT
TATGCTTCGTCATTTTCTTTACAAACCTATTAAGACCAAGCTCTACGTGG
TAGGGCAGGCGGGTACGAAGCACCCATTTTTTGGCGTGCCACTTGCATGG
TGCCCTTGTTTGGGATGTTGAGAAATGGAGGAGGAGTTACTTATACAGTC
GTCACAATTATTGACCTTACAGCATTCTCTGAAGGTTTTCGATCGTGAAT
ATCTATTTATGTATTCATGCAATGCCTTCGAAGGCACTGTATTGTTGAGA
GCGGAGTCCCATGACCCCATTCTTATTTCCTCGGCCTTGACCAGCACCGG
AAAAGGCACGCTTAGGGGCAGGCAAATCATCGTATGCTTGCCTGCGTTTA
TAATACTGATCAATCGTTTCCGCCCCACAGCCACAGGAGCCGTCCACATT
TTGTTGTGCTCCACTCCTTGGCATCTACGCCCCAAAACCGCCTCCTGCGG
CACGAAGCATCCTCTTTCTCCCCGTCTCGGTCTGGCACCAACAAGGGATA
CAATCAGTAAGACCATCAAAAGGCCATGGATGAACCGCTCTAGGCCTTTC
CGCTCCTTGCTCCCCCCGCCCTCATCATCCTCTTCCTCATCTACAATAAC
GATTTACAGAAATCTTACAAAAGCTCCCACAGCCCTTTGGGAGCCACTAC
CTTGGTATACCAGAAGAGTTGTCAAAAGAAAAAGCCGCTCATAATACCAC
TGCAACAATACCCAAGAATTGGAAAACCCGAGAAAAGGGAGGAGACACCT
GTGTGGGAGGTTTTGTGTATGGCGAAAACCATTCCTGCAAAAACCCACAC
TAGCTTAAACCCGCTTACAGTCATATTAGGAGAGAATATTGAAGACACAA
CATCTTAAAAATCCACTCAAGGCGCCTGCAGAGACATTGACCAGACTCAG
GATGGGGCATGGGGCACGATCGCCGTGGTAGGGCAGGCGGGTACGAAGCA
CCCATTTTTTGGCGTGCCACTTGCATGGTGCCCTTGTTTGGGATGTTGAG
AAATGGAGGAGGAGTTACTTATACAGTCGTCACAATTATTGACCTTACAG
CATTCTCTGAAGGTTTTCGATCGTGAATATCTATTTATGTATTCATGGAA
TGCCTTCGAAGGCACTGTATTGTTGAGAGCGGAGTCCCATGACCCCATTC
TTATTTCCTCGGCCTTGACCAGCACCGGAAAAGGCACGCTTAGGGGCAGG
CAAATCATCGTATGCTTGCCTGCGTTTATAATACTGATCAATCGTTTCCG
CCCCACAGCCACAGGAGCCGTCCACATTTGTTGTGCTCCACTCCTTGGCA
TCTACGCCCCAAAACCGCCTCCTGCGGCACGAAGCATCCTCTTTCTCCCC
GTCTCGGTCTGGCACCAACAAGGGATACAATCAGTAAGACCATCAAAAGG
CCATGGATGAATCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGC
AAGGCCGCCTCCATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGAC
CAGCGGAGATGCAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGG
ATAGCAAGAGTAAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTG
TTAGTGCTGGTGCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAG
CGCCCTCAAAACCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGG
AGCTGAGTGCATCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGG
AAGGGGAAGCACAAGTATGTAGAGGGTGGGAAATGGAGGGCGAGGACCGC
GTGCTTGAATCGTGGTAGTGGTGGTGACAATTGTCTTCCGTCATGCCGCA
ATGTTTAACTCGTGTTACTCATCACTCCTACCCCCCTTCTCCCCCCCCTC
CCTCCATTCCTTCCCTCTCCTCCTCCCTCCAGCTGGCACCTAAAAAAGGA
GCATGTCCCACGTTTTCTCGCCATGGGTCTCTTTTCCGCTGGGAACGTCC
TGGGTGCAGTGCAATCACTCACCCTCATCTCGCCGACTAATTTCTCGGTA
TTACAACCGTCCATCCCAGTCTTCACCATGATGCTCTCCGTCCTCTTCCG
CATGGAAAAACTCACCCCCATCAAGACCCTGGGCCTCCTAGCCGCCGTTG
CGGGCGCAGTGGTCGTGGAAGTAGTCCACTCACCCATACCCGGAACAGGC
GAGAAAGCGAGCCAAGCGGACTTTATTGCCGGAAACGTCATCGTCATCCT
TCAATGCCTCTCCATGGCCTCCCTCCTGGTCTTTCAAAAAAAAGCCCTTC
TCTTCTACCACCCCACCATCGTGACGGCCTGGTACTACAGCATTGGCTCC
ATTCTCACCCTCCTCATTTGCCTTTCCAAGTCCCTCCCCGCCTCCGCTTA
CGCCCTCTCGTCTTCCCTCGCCCCCTGGCTTGCTCTTGCCTATGCCGCCA
TATTCGGAACAGCTTTTAACTATAATGCGTACAGCTGGGCAGGGACGGTG
GTGGTCCCCGCAGTGATATCAATTTATTCAACGCTGCAGCCGTTGGGGAC
CGCACTTCTGTCTTTCGTCTTTTTGGGGGACAAGGTCACGGGGGGCGAGG
CGGGCGGAGGAGTGTTGGTGGTGCTGGGGCTGATCGGAACGGTGTGGGGG
AGGGAGAGGGAGAGGGAGAGGAAGGCGGGAAAGGAGAACGAAGAGAAGAG
GGGAAATGAGGAGGAGGAGGTAGTGCAGGGAAGGGGGGCAGGGGAGGGGG
AGGAAGGGATGGAGGGCATGGTGGCTGGAGGAGGGGGAGGAAGAGGAGGA
ACGGCCTCTTACGGCTTGACAGGAAGGAGAGACAGTAAGTCACAGCCTTT
GGTACAGGAGCAGGGAGGGGAAATAGAGGAGAGAGGGAGGAAGGGAAGGG
TGGCTATTTGACGGTGGTGGCTGAGTTTCCTCCCTGGCGTGGAGAAGGAC
AAAGGATGGTGAGGATTTAAGATCCCCTCTTGACTTCGTGGCTCTAATGG
AATCGATGGAGGGAAAGGGGAGCGAAGCGGCTGTTATAATGTGACGTTCA
TATGAAGCTCTATTAAAAGGTATGAGGAGCAACAAAATGTAAATTTGGCA
AATTTAAGTGTGCGTGGCCTTGAAGGACGCGCGGACAGTGTGTGTATGAC
TTGATGAAAGGGAGCAACAGCGAAGGAGAAAGAAGGCGGGTGAAGGGGAC
AGCGGCCCATCTAGCCGACCGCTGTACAGACGAGATCAAACATAACAAAG
TATGATAAAGTAATTCAAGAAATAAAATCATTATATTTTTC back to topCoding sequence (CDS) from alignment at chr12:199997..203337+ >NO12G00540.1 ID=NO12G00540.1|Name=NO12G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr12:199997..203337+ (Nannochloropsis oceanica) ATGGATGAATCGATAACACTTTTGGAGGATGGCATGACGCCCGCCGGCAA GGCCGCCTCCATGTCCATTTCTGCCTCTGGAGGCGGCAACGGGGAGACCA GCGGAGATGCAAGCACGCCCAGCACTGTCAATAGTGATGCTGATGTGGAT AGCAAGAGTAAAGGTTGCTTTACCAACGCCTGCTGTGTGCATCCATTGTT AGTGCTGGTGCAATTCATTTTCTCGGGTTACCACGTGTTGACCTCAAGCG CCCTCAAAACCAAGGGTGTTGACCCGTTGGTCTTTGCACTGTATCGGGAG CTGAGTGCATCGGCGTTGATGGCGATGTGCGCCAGCATGGCCGTATGGAA GGGGAAGCACAACTGGCACCTAAAAAAGGAGCATGTCCCACGTTTTCTCG CCATGGGTCTCTTTTCCGCTGGGAACGTCCTGGGTGCAGTGCAATCACTC ACCCTCATCTCGCCGACTAATTTCTCGGTATTACAACCGTCCATCCCAGT CTTCACCATGATGCTCTCCGTCCTCTTCCGCATGGAAAAACTCACCCCCA TCAAGACCCTGGGCCTCCTAGCCGCCGTTGCGGGCGCAGTGGTCGTGGAA GTAGTCCACTCACCCATACCCGGAACAGGCGAGAAAGCGAGCCAAGCGGA CTTTATTGCCGGAAACGTCATCGTCATCCTTCAATGCCTCTCCATGGCCT CCCTCCTGGTCTTTCAAAAAAAAGCCCTTCTCTTCTACCACCCCACCATC GTGACGGCCTGGTACTACAGCATTGGCTCCATTCTCACCCTCCTCATTTG CCTTTCCAAGTCCCTCCCCGCCTCCGCTTACGCCCTCTCGTCTTCCCTCG CCCCCTGGCTTGCTCTTGCCTATGCCGCCATATTCGGAACAGCTTTTAAC TATAATGCGTACAGCTGGGCAGGGACGGTGGTGGTCCCCGCAGTGATATC AATTTATTCAACGCTGCAGCCGTTGGGGACCGCACTTCTGTCTTTCGTCT TTTTGGGGGACAAGGTCACGGGGGGCGAGGCGGGCGGAGGAGTGTTGGTG GTGCTGGGGCTGATCGGAACGGTGTGGGGGAGGGAGAGGGAGAGGGAGAG GAAGGCGGGAAAGGAGAACGAAGAGAAGAGGGGAAATGAGGAGGAGGAGG TAGTGCAGGGAAGGGGGGCAGGGGAGGGGGAGGAAGGGATGGAGGGCATG GTGGCTGGAGGAGGGGGAGGAAGAGGAGGAACGGCCTCTTACGGCTTGAC AGGAAGGAGAGACAGTAAGTCACAGCCTTTGGTACAGGAGCAGGGAGGGG AAATAGAGGAGAGAGGGAGGAAGGGAAGGGTGGCTATTTGA back to top
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