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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:180736..182385 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00500.1 vs.
Match: EWM25971.1 (r- vamp71-family [Nannochloropsis gaditana]) HSP 1 Score: 367.5 bits (942), Expect = 3.000e-98 Identity = 180/221 (81.45%), Postives = 199/221 (90.05%), Query Frame = 0
Query: 1 MTILYGLIARGKDVLSEFTAVSGNFPTITRLLLGKIPRDQEGKRSYVYDAHVFHYLVSDGLTYLCMTDDPHQQRFRAPFAYLDDIQNRFLSMYGRERAQTAFAFAMNEEFSRILQRQMDFFNSPDASAASVLQAKLDDVRNVMVSNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYGLVAVGIGLLLFFIFATACGFDFKGCGK 222
MTILY LIARGKDVL E+TAVSGNFPT+TRLLLGKIPR ++GKRSYVYDAHVFHY+V+D LTYLCMTDDP Q+RFRAPFAYL+DI++RFL+ YGRE A TA AFAMNEEFS IL+RQMD+FNSPDA+A+S LQAKLDDVRNVM+ NVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCY L+ I L+ I A+ACGFDF GCGK
Sbjct: 50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNSPDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGCGK 270
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00500.1 ID=NO12G00500.1|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp CGTGCCTGTCTGCCTGTTGTGGGTCGGGATGGATGGAGAGGTGGTGAGTA AGGTGGAGGGATGAGGCAGAGTGATGCAGGTGAAAGGACGGAAGAAAACA TGCCACATGGCCAGCCCAGAGACCTGCATCGCGCACTTCTCCTCACTCTT CTCTAGGCCACTCCCTTGAAGATATGCGCGACCAGAAAAGGTGGTTGGGA TGGGCGGTATGTGGAAACCGGGGATGGTGTAAATCTCGAGCGATGCCAGC GACTGTTCTTCTGGAGCGCAATGCAACGCATCCTTATCGCGCTACCCGTT ATGCGCCTTAGGCGAATATTACCGGGCACCACGATGCAATACCCTTACAA TACATGTGCCAGCCGCAATCGATTGTGCATTCAACTCATGTCTTAACGCT GACCTTGATTCGTCCATTCGTATGCAGGCACAGACAACTGTCTCACTACT ATCGCCCGGTGATCGTCATCAGCTTCTTCCTCGCCTTCCTACGTCCCACG CGCAGCCCACACCACGCACCACACCCACGCCACCCTTCACGCCCGCTGCA CATCAACCATGACTATTCTCTACGGCCTCATCGCCCGGGGCAAGGACGTT CTCAGCGAGTTCACGGCCGTCTCTGGCAACTTTCCCACCATCACACGCCT TCTTTTGGGGAAAATCCCGCGGGACCAAGAGGGCAAGCGCAGTTATGTCT ACGACGCCCACGTCTTCCACTACCTTGTGTCGGACGGTTTGACTTACTTA TGCATGACCGATGACCCGCATCAGCAGCGTTTTCGCGCGCCCTTTGCTTA TTTGGATGACATTCAAAACCGGTTCCTGTCCATGTATGGCCGCGAACGCG CACAGACGGCATTCGCTTTTGCGATGAACGAGGAGTTTTCCCGGATCCTA CAGCGGCAGATGGACTTTTTCAACAGTCCTGATGCCAGCGCCGCGAGTGT CTTGCAAGCCAAATTGGACGACGTACGAAATGTCATGGTTTCCAATGTGG ACTTGGTCTTGGAGCGAGGCGAGAAGTTGGAGTTACTGGTTGACAAGACG GCGGACCTGCAGCATAGTGCCTTTAAGTTTGAGCGCTCGTCGCGGCAGTT GCGGCATGAGATGCTGTGGCGCAGGATTCGGTGTTACGGGCTCGTTGCTG TAGGGATCGGATTGCTGTTGTTTTTCATTTTTGCCACGGCCTGTGGCTTT GATTTCAAAGGGTGTGGGAAAGGGTAGTCATTAGTGCACGATTTATTACA AATTGCTCGGTCTGTAAATACTGGTAGAGACGACATGTGTATGTATAGCA TCAGCTTCCTCTTGCCTTTGTGCTTGCTTGAGACATGAAAAGCATGTACG GTCTCATTGGAAAGAAAAAATTTTGAACTGAATGCAG back to topprotein sequence of NO12G00500.1 >NO12G00500.1-protein ID=NO12G00500.1-protein|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp MTILYGLIARGKDVLSEFTAVSGNFPTITRLLLGKIPRDQEGKRSYVYDA HVFHYLVSDGLTYLCMTDDPHQQRFRAPFAYLDDIQNRFLSMYGRERAQT AFAFAMNEEFSRILQRQMDFFNSPDASAASVLQAKLDDVRNVMVSNVDLV LERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYGLVAVGI GLLLFFIFATACGFDFKGCGKG* back to topmRNA from alignment at chr12:180736..182385- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00500.1 ID=NO12G00500.1|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at chr12:180736..182385- (Nannochloropsis oceanica) CGTGCCTGTCTGCCTGTTGTGGGTCGGGATGGATGGAGAGGTGGTGAGTA
AGGTGGAGGGATGAGGCAGAGTGATGCAGGTGAAAGGACGGAAGAAAACA
TGCCACATGGCCAGCCCAGAGACCTGCATCGCGCACTTCTCCTCACTCTT
CTCTAGGCCACTCCCTTGAAGATATGCGCGACCAGAAAAGGTGGTTGGGA
TGGGCGGTATGTGGAAACCGGGGATGGTGTAAATCTCGAGCGATGCCAGC
GACTGTTCTTCTGGAGCGCAATGCAACGCATCCTTATCGCGCTACCCGTT
ATGCGCCTTAGGCGAATATTACCGGGCACCACGATGCAATACCCTTACAA
TACATGTGCCAGCCGCAATCGATTGTGCATTCAACTCATGTCTTAACGCT
GACCTTGATTCGTCCATTCGTATGCAGGCACAGACAACTGTCTCACTACT
ATCGCCCGGTGATCGTCATCAGCTTCTTCCTCGCCTTCCTACGTCCCACG
CGCAGCCCACACCACGCACCACACCCACGCCACCCTTCACGCCCGCTGCA
CATCAACCATGACTATTGTAAGTACCTACCCTCCGTGTCCCCTTTTCCCG
CTGCCGGCTAGCACACGTCCCCTCCTTCCTGAGGATGGCACCTGGGGCTC
CGCTTATGTCTCTCTTGTCTCTTTCTAAACGAGGTCACTTATGTCGCATT
CACGCAGCACAGCATGTCCATCCGCATGCATCATGTACTCTCGCTCCGTC
TTTCCATCCTTCACGCAAATAAATGATGTCATCACACCCTCATTTCCCCT
CAACTCACCACCATCCCCTGTCTTCACAAGCTCTACGGCCTCATCGCCCG
GGGCAAGGACGTTCTCAGCGAGTTCACGGCCGTCTCTGGCAACTTTCCCA
CCATCACACGCCTTCTTTTGGGGAAAATCCCGCGGGACCAAGAGGGCAAG
CGCAGTTATGTCTACGACGCCCACGTCTTCCACTACCTTGTGTCGGACGG
TTTGACTTACTTATGCATGACCGATGACCCGCATCAGCAGCGTTTTCGCG
CGCCCTTTGCTTATTTGGATGACATTCAAAACCGGTTCCTGTCCATGTAT
GGCCGCGAACGCGCACAGACGGCATTCGCTTTTGCGATGAACGAGGAGTT
TTCCCGGATCCTACAGCGGCAGATGGACTTTTTCAACAGTCCTGATGCCA
GCGCCGCGAGTGTCTTGCAAGCCAAATTGGACGACGTACGAAATGTCATG
GTTTCCAATGTGGACTTGGTCTTGGAGCGAGGCGAGAAGTTGGAGTTACT
GGTTGACAAGACGGCGGACCTGCAGCATAGTGCCTTTAAGTTTGAGCGCT
CGTCGCGGCAGTTGCGGCATGAGATGCTGTGGCGCAGGATTCGGTGTTAC
GGGCTCGTTGCTGTAGGGATCGGATTGCTGTTGTTTTTCATTTTTGCCAC
GGCCTGTGGCTTTGATTTCAAAGGGTGTGGGAAAGGGTAGTCATTAGTGC
ACGATTTATTACAAATTGCTCGGTCTGTAAATACTGGTAGAGACGACATG
TGTATGTATAGCATCAGCTTCCTCTTGCCTTTGTGCTTGCTTGAGACATG
AAAAGCATGTACGGTCTCATTGGAAAGAAAAAATTTTGAACTGAATGCAG
back to topCoding sequence (CDS) from alignment at chr12:180736..182385- >NO12G00500.1 ID=NO12G00500.1|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr12:180736..182385- (Nannochloropsis oceanica) ATGACTATTCTCTACGGCCTCATCGCCCGGGGCAAGGACGTTCTCAGCGA GTTCACGGCCGTCTCTGGCAACTTTCCCACCATCACACGCCTTCTTTTGG GGAAAATCCCGCGGGACCAAGAGGGCAAGCGCAGTTATGTCTACGACGCC CACGTCTTCCACTACCTTGTGTCGGACGGTTTGACTTACTTATGCATGAC CGATGACCCGCATCAGCAGCGTTTTCGCGCGCCCTTTGCTTATTTGGATG ACATTCAAAACCGGTTCCTGTCCATGTATGGCCGCGAACGCGCACAGACG GCATTCGCTTTTGCGATGAACGAGGAGTTTTCCCGGATCCTACAGCGGCA GATGGACTTTTTCAACAGTCCTGATGCCAGCGCCGCGAGTGTCTTGCAAG CCAAATTGGACGACGTACGAAATGTCATGGTTTCCAATGTGGACTTGGTC TTGGAGCGAGGCGAGAAGTTGGAGTTACTGGTTGACAAGACGGCGGACCT GCAGCATAGTGCCTTTAAGTTTGAGCGCTCGTCGCGGCAGTTGCGGCATG AGATGCTGTGGCGCAGGATTCGGTGTTACGGGCTCGTTGCTGTAGGGATC GGATTGCTGTTGTTTTTCATTTTTGCCACGGCCTGTGGCTTTGATTTCAA AGGGTGTGGGAAAGGGTAG back to top
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