NO12G00500.1, NO12G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00500.1
Unique NameNO12G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1387
Alignment locationchr12:180736..182385 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:180736..182385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00500.1 vs.
Match: EWM25971.1 (r- vamp71-family [Nannochloropsis gaditana])

HSP 1 Score: 367.5 bits (942), Expect = 3.000e-98
Identity = 180/221 (81.45%), Postives = 199/221 (90.05%), Query Frame = 0
Query:    1 MTILYGLIARGKDVLSEFTAVSGNFPTITRLLLGKIPRDQEGKRSYVYDAHVFHYLVSDGLTYLCMTDDPHQQRFRAPFAYLDDIQNRFLSMYGRERAQTAFAFAMNEEFSRILQRQMDFFNSPDASAASVLQAKLDDVRNVMVSNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYGLVAVGIGLLLFFIFATACGFDFKGCGK 222
            MTILY LIARGKDVL E+TAVSGNFPT+TRLLLGKIPR ++GKRSYVYDAHVFHY+V+D LTYLCMTDDP Q+RFRAPFAYL+DI++RFL+ YGRE A TA AFAMNEEFS IL+RQMD+FNSPDA+A+S LQAKLDDVRNVM+ NVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCY L+   I  L+  I A+ACGFDF GCGK
Sbjct:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNSPDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGCGK 270          
The following BLAST results are available for this feature:
BLAST of NO12G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25971.13.000e-9881.45r- vamp71-family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00500NO12G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00500.1NO12G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00500.1.cds1NO12G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00500.1.cds2NO12G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00500.1 ID=NO12G00500.1|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
CGTGCCTGTCTGCCTGTTGTGGGTCGGGATGGATGGAGAGGTGGTGAGTA
AGGTGGAGGGATGAGGCAGAGTGATGCAGGTGAAAGGACGGAAGAAAACA
TGCCACATGGCCAGCCCAGAGACCTGCATCGCGCACTTCTCCTCACTCTT
CTCTAGGCCACTCCCTTGAAGATATGCGCGACCAGAAAAGGTGGTTGGGA
TGGGCGGTATGTGGAAACCGGGGATGGTGTAAATCTCGAGCGATGCCAGC
GACTGTTCTTCTGGAGCGCAATGCAACGCATCCTTATCGCGCTACCCGTT
ATGCGCCTTAGGCGAATATTACCGGGCACCACGATGCAATACCCTTACAA
TACATGTGCCAGCCGCAATCGATTGTGCATTCAACTCATGTCTTAACGCT
GACCTTGATTCGTCCATTCGTATGCAGGCACAGACAACTGTCTCACTACT
ATCGCCCGGTGATCGTCATCAGCTTCTTCCTCGCCTTCCTACGTCCCACG
CGCAGCCCACACCACGCACCACACCCACGCCACCCTTCACGCCCGCTGCA
CATCAACCATGACTATTCTCTACGGCCTCATCGCCCGGGGCAAGGACGTT
CTCAGCGAGTTCACGGCCGTCTCTGGCAACTTTCCCACCATCACACGCCT
TCTTTTGGGGAAAATCCCGCGGGACCAAGAGGGCAAGCGCAGTTATGTCT
ACGACGCCCACGTCTTCCACTACCTTGTGTCGGACGGTTTGACTTACTTA
TGCATGACCGATGACCCGCATCAGCAGCGTTTTCGCGCGCCCTTTGCTTA
TTTGGATGACATTCAAAACCGGTTCCTGTCCATGTATGGCCGCGAACGCG
CACAGACGGCATTCGCTTTTGCGATGAACGAGGAGTTTTCCCGGATCCTA
CAGCGGCAGATGGACTTTTTCAACAGTCCTGATGCCAGCGCCGCGAGTGT
CTTGCAAGCCAAATTGGACGACGTACGAAATGTCATGGTTTCCAATGTGG
ACTTGGTCTTGGAGCGAGGCGAGAAGTTGGAGTTACTGGTTGACAAGACG
GCGGACCTGCAGCATAGTGCCTTTAAGTTTGAGCGCTCGTCGCGGCAGTT
GCGGCATGAGATGCTGTGGCGCAGGATTCGGTGTTACGGGCTCGTTGCTG
TAGGGATCGGATTGCTGTTGTTTTTCATTTTTGCCACGGCCTGTGGCTTT
GATTTCAAAGGGTGTGGGAAAGGGTAGTCATTAGTGCACGATTTATTACA
AATTGCTCGGTCTGTAAATACTGGTAGAGACGACATGTGTATGTATAGCA
TCAGCTTCCTCTTGCCTTTGTGCTTGCTTGAGACATGAAAAGCATGTACG
GTCTCATTGGAAAGAAAAAATTTTGAACTGAATGCAG
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protein sequence of NO12G00500.1

>NO12G00500.1-protein ID=NO12G00500.1-protein|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MTILYGLIARGKDVLSEFTAVSGNFPTITRLLLGKIPRDQEGKRSYVYDA
HVFHYLVSDGLTYLCMTDDPHQQRFRAPFAYLDDIQNRFLSMYGRERAQT
AFAFAMNEEFSRILQRQMDFFNSPDASAASVLQAKLDDVRNVMVSNVDLV
LERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYGLVAVGI
GLLLFFIFATACGFDFKGCGKG*
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mRNA from alignment at chr12:180736..182385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00500.1 ID=NO12G00500.1|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at chr12:180736..182385- (Nannochloropsis oceanica)
CGTGCCTGTCTGCCTGTTGTGGGTCGGGATGGATGGAGAGGTGGTGAGTA AGGTGGAGGGATGAGGCAGAGTGATGCAGGTGAAAGGACGGAAGAAAACA TGCCACATGGCCAGCCCAGAGACCTGCATCGCGCACTTCTCCTCACTCTT CTCTAGGCCACTCCCTTGAAGATATGCGCGACCAGAAAAGGTGGTTGGGA TGGGCGGTATGTGGAAACCGGGGATGGTGTAAATCTCGAGCGATGCCAGC GACTGTTCTTCTGGAGCGCAATGCAACGCATCCTTATCGCGCTACCCGTT ATGCGCCTTAGGCGAATATTACCGGGCACCACGATGCAATACCCTTACAA TACATGTGCCAGCCGCAATCGATTGTGCATTCAACTCATGTCTTAACGCT GACCTTGATTCGTCCATTCGTATGCAGGCACAGACAACTGTCTCACTACT ATCGCCCGGTGATCGTCATCAGCTTCTTCCTCGCCTTCCTACGTCCCACG CGCAGCCCACACCACGCACCACACCCACGCCACCCTTCACGCCCGCTGCA CATCAACCATGACTATTGTAAGTACCTACCCTCCGTGTCCCCTTTTCCCG CTGCCGGCTAGCACACGTCCCCTCCTTCCTGAGGATGGCACCTGGGGCTC CGCTTATGTCTCTCTTGTCTCTTTCTAAACGAGGTCACTTATGTCGCATT CACGCAGCACAGCATGTCCATCCGCATGCATCATGTACTCTCGCTCCGTC TTTCCATCCTTCACGCAAATAAATGATGTCATCACACCCTCATTTCCCCT CAACTCACCACCATCCCCTGTCTTCACAAGCTCTACGGCCTCATCGCCCG GGGCAAGGACGTTCTCAGCGAGTTCACGGCCGTCTCTGGCAACTTTCCCA CCATCACACGCCTTCTTTTGGGGAAAATCCCGCGGGACCAAGAGGGCAAG CGCAGTTATGTCTACGACGCCCACGTCTTCCACTACCTTGTGTCGGACGG TTTGACTTACTTATGCATGACCGATGACCCGCATCAGCAGCGTTTTCGCG CGCCCTTTGCTTATTTGGATGACATTCAAAACCGGTTCCTGTCCATGTAT GGCCGCGAACGCGCACAGACGGCATTCGCTTTTGCGATGAACGAGGAGTT TTCCCGGATCCTACAGCGGCAGATGGACTTTTTCAACAGTCCTGATGCCA GCGCCGCGAGTGTCTTGCAAGCCAAATTGGACGACGTACGAAATGTCATG GTTTCCAATGTGGACTTGGTCTTGGAGCGAGGCGAGAAGTTGGAGTTACT GGTTGACAAGACGGCGGACCTGCAGCATAGTGCCTTTAAGTTTGAGCGCT CGTCGCGGCAGTTGCGGCATGAGATGCTGTGGCGCAGGATTCGGTGTTAC GGGCTCGTTGCTGTAGGGATCGGATTGCTGTTGTTTTTCATTTTTGCCAC GGCCTGTGGCTTTGATTTCAAAGGGTGTGGGAAAGGGTAGTCATTAGTGC ACGATTTATTACAAATTGCTCGGTCTGTAAATACTGGTAGAGACGACATG TGTATGTATAGCATCAGCTTCCTCTTGCCTTTGTGCTTGCTTGAGACATG AAAAGCATGTACGGTCTCATTGGAAAGAAAAAATTTTGAACTGAATGCAG
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Coding sequence (CDS) from alignment at chr12:180736..182385-

>NO12G00500.1 ID=NO12G00500.1|Name=NO12G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr12:180736..182385- (Nannochloropsis oceanica)
ATGACTATTCTCTACGGCCTCATCGCCCGGGGCAAGGACGTTCTCAGCGA
GTTCACGGCCGTCTCTGGCAACTTTCCCACCATCACACGCCTTCTTTTGG
GGAAAATCCCGCGGGACCAAGAGGGCAAGCGCAGTTATGTCTACGACGCC
CACGTCTTCCACTACCTTGTGTCGGACGGTTTGACTTACTTATGCATGAC
CGATGACCCGCATCAGCAGCGTTTTCGCGCGCCCTTTGCTTATTTGGATG
ACATTCAAAACCGGTTCCTGTCCATGTATGGCCGCGAACGCGCACAGACG
GCATTCGCTTTTGCGATGAACGAGGAGTTTTCCCGGATCCTACAGCGGCA
GATGGACTTTTTCAACAGTCCTGATGCCAGCGCCGCGAGTGTCTTGCAAG
CCAAATTGGACGACGTACGAAATGTCATGGTTTCCAATGTGGACTTGGTC
TTGGAGCGAGGCGAGAAGTTGGAGTTACTGGTTGACAAGACGGCGGACCT
GCAGCATAGTGCCTTTAAGTTTGAGCGCTCGTCGCGGCAGTTGCGGCATG
AGATGCTGTGGCGCAGGATTCGGTGTTACGGGCTCGTTGCTGTAGGGATC
GGATTGCTGTTGTTTTTCATTTTTGCCACGGCCTGTGGCTTTGATTTCAA
AGGGTGTGGGAAAGGGTAG
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Synonyms
Publications