NO12G00400.1, NO12G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00400.1
Unique NameNO12G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length846
Alignment locationchr12:145903..146748 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:145903..146748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00400.1 vs.
Match: EWM25986.1 (hypothetical protein Naga_100151g4 [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 1.100e-68
Identity = 153/265 (57.74%), Postives = 197/265 (74.34%), Query Frame = 0 
Query:   17 GRSPPFLLRLLLFLVLVVLAFPPLSATAFVLPTFPSQFSSSTLLSAADGRGDGSISRAGTLQSVAAAAGLLLLTTHPTNAAVPTFQEYYGGEGAQPKTNNYIMSTRKQKQQDARAERAAAASTDTDVTIPADPKQLLSNIQETLGSLIPMIKIEGWDDVLAATKKKPLNTLFMPYLGYGTPAGLAEAIGGDKQASKALEEGRQEAGVALQQLVDYAFSNRVIFFNSLDKQQVSALASGRAPPDLSEPLGLLQDTVALVEALQKSL 282
            GR+P    RLL  L + + A+   + +AF+LP   S  SS+T LSA   R D  +SRA ++Q   A+  +L     P+ AAVPT QEYYG EGAQPKTNN+I+++++QKQQ  ++   AA+S   +   P+DP++L+ ++ +TL +L P+IK EGWDDVLAA K+KPL  L  P+LGYG  A LA+A+GGD + S+ALEE RQEA VALQQLVDYAFSNRVIFFNSLDKQQV+ALASGRAPPDLSEPLGLL+DTV LV+ALQ++L
Sbjct:   14 GRTPH---RLLAVLSVSLFAYSRQTVSAFLLPAVSSH-SSATKLSAVSNRYDDCVSRAISIQ--VASVAILAFVASPSIAAVPTLQEYYGEEGAQPKTNNFILNSKRQKQQGEKSANNAASSV-AETASPSDPEELIESMTDTLYALSPLIKKEGWDDVLAAVKRKPLCLLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSNRVIFFNSLDKQQVTALASGRAPPDLSEPLGLLEDTVGLVKALQETL 271
The following BLAST results are available for this feature:
BLAST of NO12G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25986.11.100e-6857.74hypothetical protein Naga_100151g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00400NO12G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00400.1NO12G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00400.1.cds1NO12G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00400.1 ID=NO12G00400.1|Name=NO12G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=846bp
ATGGTGCCGCTCCATAGATACCACCAACCACTACAAGCAAATGCGAATGG
TCGAAGCCCGCCGTTCCTGCTTCGTCTCTTGCTCTTCCTCGTCCTCGTCG
TCCTAGCATTCCCACCTCTTAGCGCGACGGCTTTCGTCCTCCCCACCTTT
CCATCGCAATTTTCCTCGTCAACACTTCTGTCCGCCGCCGATGGTAGAGG
CGACGGAAGCATCAGCAGAGCTGGCACCCTTCAATCCGTCGCCGCTGCTG
CTGGTCTCCTTCTCCTTACCACACACCCAACCAATGCCGCCGTCCCCACC
TTCCAAGAGTATTACGGTGGGGAGGGCGCGCAGCCTAAGACCAATAACTA
TATCATGAGCACCAGAAAGCAGAAGCAACAAGATGCGAGGGCTGAACGTG
CTGCAGCTGCATCCACAGACACCGACGTGACTATCCCAGCGGACCCCAAG
CAGCTCCTTAGCAACATTCAAGAAACGTTGGGCTCGCTTATCCCCATGAT
AAAGATCGAGGGGTGGGATGACGTACTAGCAGCTACGAAGAAGAAGCCTC
TTAATACCCTCTTTATGCCTTATCTCGGCTACGGCACACCTGCGGGGCTG
GCAGAGGCCATAGGTGGGGACAAGCAGGCAAGCAAGGCCTTGGAGGAAGG
ACGGCAAGAAGCAGGCGTGGCGTTGCAGCAGCTGGTAGATTACGCCTTTT
CGAACCGGGTGATCTTTTTCAACTCGCTGGATAAGCAGCAAGTGTCGGCG
TTGGCTTCTGGGAGGGCTCCACCTGATCTGAGCGAGCCCTTGGGGTTGCT
TCAGGACACGGTGGCGCTCGTAGAGGCATTGCAAAAAAGCTTGTGA
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protein sequence of NO12G00400.1

>NO12G00400.1-protein ID=NO12G00400.1-protein|Name=NO12G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MVPLHRYHQPLQANANGRSPPFLLRLLLFLVLVVLAFPPLSATAFVLPTF
PSQFSSSTLLSAADGRGDGSISRAGTLQSVAAAAGLLLLTTHPTNAAVPT
FQEYYGGEGAQPKTNNYIMSTRKQKQQDARAERAAAASTDTDVTIPADPK
QLLSNIQETLGSLIPMIKIEGWDDVLAATKKKPLNTLFMPYLGYGTPAGL
AEAIGGDKQASKALEEGRQEAGVALQQLVDYAFSNRVIFFNSLDKQQVSA
LASGRAPPDLSEPLGLLQDTVALVEALQKSL*
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mRNA from alignment at chr12:145903..146748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00400.1 ID=NO12G00400.1|Name=NO12G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=846bp|location=Sequence derived from alignment at chr12:145903..146748- (Nannochloropsis oceanica)
ATGGTGCCGCTCCATAGATACCACCAACCACTACAAGCAAATGCGAATGG
TCGAAGCCCGCCGTTCCTGCTTCGTCTCTTGCTCTTCCTCGTCCTCGTCG
TCCTAGCATTCCCACCTCTTAGCGCGACGGCTTTCGTCCTCCCCACCTTT
CCATCGCAATTTTCCTCGTCAACACTTCTGTCCGCCGCCGATGGTAGAGG
CGACGGAAGCATCAGCAGAGCTGGCACCCTTCAATCCGTCGCCGCTGCTG
CTGGTCTCCTTCTCCTTACCACACACCCAACCAATGCCGCCGTCCCCACC
TTCCAAGAGTATTACGGTGGGGAGGGCGCGCAGCCTAAGACCAATAACTA
TATCATGAGCACCAGAAAGCAGAAGCAACAAGATGCGAGGGCTGAACGTG
CTGCAGCTGCATCCACAGACACCGACGTGACTATCCCAGCGGACCCCAAG
CAGCTCCTTAGCAACATTCAAGAAACGTTGGGCTCGCTTATCCCCATGAT
AAAGATCGAGGGGTGGGATGACGTACTAGCAGCTACGAAGAAGAAGCCTC
TTAATACCCTCTTTATGCCTTATCTCGGCTACGGCACACCTGCGGGGCTG
GCAGAGGCCATAGGTGGGGACAAGCAGGCAAGCAAGGCCTTGGAGGAAGG
ACGGCAAGAAGCAGGCGTGGCGTTGCAGCAGCTGGTAGATTACGCCTTTT
CGAACCGGGTGATCTTTTTCAACTCGCTGGATAAGCAGCAAGTGTCGGCG
TTGGCTTCTGGGAGGGCTCCACCTGATCTGAGCGAGCCCTTGGGGTTGCT
TCAGGACACGGTGGCGCTCGTAGAGGCATTGCAAAAAAGCTTGTGA
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Coding sequence (CDS) from alignment at chr12:145903..146748-

>NO12G00400.1 ID=NO12G00400.1|Name=NO12G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr12:145903..146748- (Nannochloropsis oceanica)
ATGGTGCCGCTCCATAGATACCACCAACCACTACAAGCAAATGCGAATGG
TCGAAGCCCGCCGTTCCTGCTTCGTCTCTTGCTCTTCCTCGTCCTCGTCG
TCCTAGCATTCCCACCTCTTAGCGCGACGGCTTTCGTCCTCCCCACCTTT
CCATCGCAATTTTCCTCGTCAACACTTCTGTCCGCCGCCGATGGTAGAGG
CGACGGAAGCATCAGCAGAGCTGGCACCCTTCAATCCGTCGCCGCTGCTG
CTGGTCTCCTTCTCCTTACCACACACCCAACCAATGCCGCCGTCCCCACC
TTCCAAGAGTATTACGGTGGGGAGGGCGCGCAGCCTAAGACCAATAACTA
TATCATGAGCACCAGAAAGCAGAAGCAACAAGATGCGAGGGCTGAACGTG
CTGCAGCTGCATCCACAGACACCGACGTGACTATCCCAGCGGACCCCAAG
CAGCTCCTTAGCAACATTCAAGAAACGTTGGGCTCGCTTATCCCCATGAT
AAAGATCGAGGGGTGGGATGACGTACTAGCAGCTACGAAGAAGAAGCCTC
TTAATACCCTCTTTATGCCTTATCTCGGCTACGGCACACCTGCGGGGCTG
GCAGAGGCCATAGGTGGGGACAAGCAGGCAAGCAAGGCCTTGGAGGAAGG
ACGGCAAGAAGCAGGCGTGGCGTTGCAGCAGCTGGTAGATTACGCCTTTT
CGAACCGGGTGATCTTTTTCAACTCGCTGGATAAGCAGCAAGTGTCGGCG
TTGGCTTCTGGGAGGGCTCCACCTGATCTGAGCGAGCCCTTGGGGTTGCT
TCAGGACACGGTGGCGCTCGTAGAGGCATTGCAAAAAAGCTTGTGA
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Synonyms
Publications