NO12G00320.1, NO12G00320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00320.1
Unique NameNO12G00320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr12:112068..113940 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:112068..113940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00320.1 vs.
Match: EWM25981.1 (endoglucanase a [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.300e-68
Identity = 121/160 (75.62%), Postives = 140/160 (87.50%), Query Frame = 0 
Query:   32 LVLALLPLFAVPQSLYGTLPFADEKIQGPQTIPGKVWLAYFDQGGPDVSYHSYDGKNHGSCELNPCTGTNAIYKNVFRKDEGASTSYTKPPNGGWTGDRFSANNSQVPVDQMYWGWNAIGNWVRLSLLVKKGGNYTLSLFGSSNSGGALTLTVDDYLQKG 192
            LV+A   + A  QSLYGT PFADEK+QGPQ IPGKVW+A+FD+GG +V+YHSYD  NHGSCELNPCTG +A+YKNVFRKDEGASTSYTKPPNGGW GDRF+ NNSQVP+DQMYWGWNA+GNWVR+SLLV++ G+YT+SLFG+SNSGG L LTVDDY   G
Sbjct:   11 LVMASCQIGAGIQSLYGTSPFADEKMQGPQNIPGKVWMAWFDRGGQNVAYHSYDDVNHGSCELNPCTGVDAVYKNVFRKDEGASTSYTKPPNGGWPGDRFAGNNSQVPIDQMYWGWNALGNWVRVSLLVQEPGDYTVSLFGTSNSGGTLLLTVDDYASHG 170
The following BLAST results are available for this feature:
BLAST of NO12G00320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25981.11.300e-6875.63endoglucanase a [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00320NO12G00320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00320.1NO12G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00320.1.cds1NO12G00320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00320.1.cds2NO12G00320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00320.1.cds3NO12G00320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00320.1.cds4NO12G00320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00320.1.cds5NO12G00320.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00320.1.cds6NO12G00320.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00320.1 ID=NO12G00320.1|Name=NO12G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
ATGGTGATGGCGGTGTTTTCATCACAGGACGAGTTGAAGACTCAACACTA
CGACATGACGATCAGCAGCAGAAGCAGCGCGCGCCCCTTCTTCCTCGTCT
TGGCACTGCTACCGCTTTTTGCTGTCCCGCAGAGCTTGTATGGGACGCTG
CCTTTTGCGGACGAGAAGATCCAAGGGCCGCAGACCATTCCGGGCAAGGT
ATGGCTTGCCTACTTCGACCAAGGAGGGCCGGATGTCTCATATCATTCGT
ACGATGGAAAAAACCACGGCTCTTGCGAGCTGAATCCATGCACGGGTACC
AATGCAATCTATAAAAATGTCTTCCGAAAGGACGAAGGCGCCTCAACCTC
TTACACCAAGCCCCCCAACGGCGGATGGACGGGGGACCGCTTTTCCGCCA
ACAATAGCCAAGTGCCCGTGGATCAGATGTACTGGGGATGGAATGCGATA
GGTAATTGGGTTCGTCTCTCCCTCCTCGTCAAGAAGGGCGGAAACTACAC
CCTCTCCCTTTTTGGTTCCAGCAACAGCGGCGGCGCACTCACACTGACGG
TAGACGACTACCTGCAGAAGGGCAAGGCGGTGACTACCACAGCCACCATT
CCCGCCACTGACGGGTACCATCAATGGGCACTTTTTCCCGACATCGCCGT
CCTTCCTTCCCTCCCCCCCGGCCTGGCCCTCCTGGCGGTGAATGTGACAG
GCATTTATGCCTATAAAGAGGGGAGTCAATTCGGGAACTTGCTCTGGTTC
GATTTTCACTGGAAGGGGTAG
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protein sequence of NO12G00320.1

>NO12G00320.1-protein ID=NO12G00320.1-protein|Name=NO12G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MVMAVFSSQDELKTQHYDMTISSRSSARPFFLVLALLPLFAVPQSLYGTL
PFADEKIQGPQTIPGKVWLAYFDQGGPDVSYHSYDGKNHGSCELNPCTGT
NAIYKNVFRKDEGASTSYTKPPNGGWTGDRFSANNSQVPVDQMYWGWNAI
GNWVRLSLLVKKGGNYTLSLFGSSNSGGALTLTVDDYLQKGKAVTTTATI
PATDGYHQWALFPDIAVLPSLPPGLALLAVNVTGIYAYKEGSQFGNLLWF
DFHWKG*
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mRNA from alignment at chr12:112068..113940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00320.1 ID=NO12G00320.1|Name=NO12G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1873bp|location=Sequence derived from alignment at chr12:112068..113940- (Nannochloropsis oceanica)
ATGGTGATGGCGGTGTTTTCATCACAGGACGAGTTGAAGTAGGGCTATCG
CTATCGCCTTTGGCTCGCTTGCTCCCTGCATCTGGCTGTGGCAATACCCT
GGCTACACCCCTTCCCGGAAGGATGCACATGGACTATGGGAGGGGAGAGG
ACAAGCGCAACTATGCGAAGAATTATGCCGGATTTATTTCGCACTAGAAC
TCTACCATTAGGTCCCTCACTCCACAGGACTCAACACTACGACATGACGA
TCAGCAGCAGAAGCAGCGCGCGCCCCTTCTTCCTCGTCTTGGCACTGCTA
CCGCTTTTTGCTGTCCCGCAGAGCTTGTATGGGACGCTGCCTTTTGCGGA
CGAGAAGATCCAAGGGCCGCAGGTATATCTGGGAGGGATGGAAGAGGTTG
GAAGTGGGGAGGAGCATTGTAGGGCGGGAGCGTGACAGGAGGGCGAGAGC
TCTATCAGAGCGGGCCAGGCCCTCACATCGTATCCGCTTCACAGAACTGT
CTCGAGCAATTTTTCTGCTACAACATCTTCTGGTCCAATTACCCACATTC
TCCCCTCCCTCCCTCCCTCCCCTCCTTCCTCCCCTCACAGACCATTCCGG
GCAAGGTATGGCTTGCCTACTTCGACCAAGGAGGGCCGGATGTCTCATAT
CATTCGTACGATGGAAAAAACCACGGCTCTTGCGAGCTGAATCCATGCAC
GGGTACCAATGCAATCTATAAAAATGTCTTCCGAAAGGTACAGTGAGGAG
GGTGCAGGGAGGGAGGAGGGACAAGGGAGAGGGAGGACGGAATGAAGTTA
AATTTAGGCGTATCGTATAGTTGGTAACCGGTCCCGGCCTATTACTCTCC
TTTTTTGCGTGCCCTGAGTCTTTCCAACTTATCATCGCTGCTGTACGACA
AATCCATCTCACCCTCCATTCTCCATCGTCCTTCTTCCCTCTCTCCCTTT
CCCCCCTCCTCTACAATACAGGACGAAGGCGCCTCAACCTCTTACACCAA
GCCCCCCAACGGCGGATGGACGGGGGACCGCTTTTCCGCCAACAATAGCC
AAGTGCCCGTGGATCAGATGTACTGGGGATGGAATGCGATAGGTGAGGCC
GATTTCTCCTCTTCTCCGTCTTTCCCTCCCTCCTGCCCTCCCTTTCTCCC
TCCCTCCTGCCATACCTTCTGTTGCCCTCCCTCCTTCCCTCCTTCCCTCC
CTGTCCTCTCCTTCCCGCCCTCCCTTACCCCATCCCTCCTTTTGTCGGTG
GGACGTGGGCCTTCCTCCCCCCCCTCCCTCCCTCTTGCCCCCCCTCTGAG
CAGACCTCGCCTCCCTCCTCCAACCACACTTGGGAAACTACTGAGCCGCC
TTTGTTCCCTTCCTCCTTCCTTCCTTCCCTTCTTCCCTCCTTCCCTCCCT
TTCGCAGGTAATTGGGTTCGTCTCTCCCTCCTCGTCAAGAAGGGCGGAAA
CTACACCCTCTCCCTTTTTGGTTCCAGCAACAGCGGCGGCGCACTCACAC
TGACGGTAGACGACTACCTGCAGAAGGGCAAGGCGGTGGTAAGTGGGAGG
AATGAAGAAATGACCCGAGGGAGGGAGGGAGGGATAGAGGGACGATTAAT
TTGGTGCATTTTCTCTCTGAATGCTCTTTCTCATTTTTTTTGAGGGTGTT
TTCTCCCTCTTCTCCTTTCCTCCCTCTCCTCTAGACTACCACAGCCACCA
TTCCCGCCACTGACGGGTACCATCAATGGGCACTTTTTCCCGACATCGCC
GTCCTTCCTTCCCTCCCCCCCGGCCTGGCCCTCCTGGCGGTGAATGTGAC
AGGCATTTATGCCTATAAAGAGGGGAGTCAATTCGGGAACTTGCTCTGGT
TCGATTTTCACTGGAAGGGGTAG
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Coding sequence (CDS) from alignment at chr12:112068..113940-

>NO12G00320.1 ID=NO12G00320.1|Name=NO12G00320.1|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr12:112068..113940- (Nannochloropsis oceanica)
ATGGTGATGGCGGTGTTTTCATCACAGGACGAGTTGAAGACTCAACACTA
CGACATGACGATCAGCAGCAGAAGCAGCGCGCGCCCCTTCTTCCTCGTCT
TGGCACTGCTACCGCTTTTTGCTGTCCCGCAGAGCTTGTATGGGACGCTG
CCTTTTGCGGACGAGAAGATCCAAGGGCCGCAGACCATTCCGGGCAAGGT
ATGGCTTGCCTACTTCGACCAAGGAGGGCCGGATGTCTCATATCATTCGT
ACGATGGAAAAAACCACGGCTCTTGCGAGCTGAATCCATGCACGGGTACC
AATGCAATCTATAAAAATGTCTTCCGAAAGGACGAAGGCGCCTCAACCTC
TTACACCAAGCCCCCCAACGGCGGATGGACGGGGGACCGCTTTTCCGCCA
ACAATAGCCAAGTGCCCGTGGATCAGATGTACTGGGGATGGAATGCGATA
GGTAATTGGGTTCGTCTCTCCCTCCTCGTCAAGAAGGGCGGAAACTACAC
CCTCTCCCTTTTTGGTTCCAGCAACAGCGGCGGCGCACTCACACTGACGG
TAGACGACTACCTGCAGAAGGGCAAGGCGGTGACTACCACAGCCACCATT
CCCGCCACTGACGGGTACCATCAATGGGCACTTTTTCCCGACATCGCCGT
CCTTCCTTCCCTCCCCCCCGGCCTGGCCCTCCTGGCGGTGAATGTGACAG
GCATTTATGCCTATAAAGAGGGGAGTCAATTCGGGAACTTGCTCTGGTTC
GATTTTCACTGGAAGGGGTAG
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Synonyms
Publications