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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:59831..61970 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00210.2 vs.
Match: XP_001032465.1 (FAD-dependent oxidoreductase [Tetrahymena thermophila SB210]; EAR84802.1 FAD-dependent oxidoreductase [Tetrahymena thermophila SB210]) HSP 1 Score: 240.0 bits (611), Expect = 2.000e-59 Identity = 185/549 (33.70%), Postives = 272/549 (49.54%), Query Frame = 0
Query: 60 QPDVVVVGAGVAGASVTYHLTHPPSSPSSTYAPPSLPLPRVLLLDAGKAGQGR-QRDLAGEPSFLTSDVSSADSSVPHHPDGESSSSSTFPFHPSGTAVFPSSSSSSSSSSTSLPSACQTVKMIVTVYPSSSSSFIAHHGERGARTYLRFASQGVEMQKTLAKRLCMAGDREGEGTGGYGGLVEKGSMYVCSKGEEDAFWEEFQLLRRLMLPEGQREEGRDEAREEPSSSPIRWCEEEEVVAMHGSQAGFTRGIFFPQDAVIDSTSYTHALIQAAVATGRAL-LLEDCPAVEGVE--EEGGREGGREGGVILSFNSLFEEGNTSVVKIRVPRTVIATGGFFLSPSPLAGILRPCFSYLAAVPSLPS------QPPSGPSPNFFTFGFTHDWCVVASGHVRVSGEDHFSALKPPRRKARSRALVEWVRARYGGKEGGRKGRIRVADASELRAGGREGEEEEVLGNARHGVYGETPDSLPLVGSDGKRGKEGEKKGGKGGGKGRLVYCLGCNAWGQSSLTYAASLVPGLLGYRELSAEQEEAARLMSVRRF 599
Q +V++VGAGV+GA+ Y L + V+++D GK+GQG Q + ++L D + + S F + +S S S+ P++ T+KM+V +YPS+S +I HHG GA YL+ A G+++Q LA+ +A ++E LV+KGS+YVC + + + F EEF+LL++L W +E+ G Q F GI+FP D+VI+S ++ LIQ + + L E+ P V V+ +EG E GV++ N + V+ TGG F P+ LAGIL PC+SYL ++ S + P S NFFT+GFTHDWC + GH+R SGEDHFSALKPPR R +L W V L+ + E+ + ++GVY ETPDS PLVG+ + K + Y LGCNAWGQ+SL+Y+ASLVPGLLGY L+ +Q+++ +L+++RRF
Sbjct: 15 QCEVLIVGAGVSGATAFYSLQ-------------KAGVKNVVIVDTGKSGQGNDQGQTTSQHAYLRED--------------DVNQSRVFEY-----------ASKSGSAVMDYPTS--TIKMMVNLYPSTSKDYIQHHGFNGAVRYLKLAHTGLQIQSELAQ---IAFEKEQLNE----NLVQKGSLYVCEEKDVEDFKEEFELLKKL-----------------GCKGVELWDQEKVWKHAGGPQTKFVLGIYFPNDSVINSQLFSSKLIQNVLKIEPSYSLFENTPQVVNVKTSKEGFALTKLENGVVIKSNYV----------------VVCTGGLFNDPN-LAGILIPCYSYLVSLKEPESTKNDKNRLPYPNSLNFFTWGFTHDWC-LTKGHLRCSGEDHFSALKPPRDAERCASLARWT----------------VEKLPYLK-------DSELNCDKKYGVYSETPDSTPLVGTMSPQSK--------------VCYVLGCNAWGQASLSYSASLVPGLLGYTNLNDDQKDSLKLLTIRRF 444
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00210.2 ID=NO12G00210.2|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp AGGACGCGGGTAGTCGCTTCCTGTATTGTGTTGATAACGTTGTAATTTAA GGAAGAAGCATGTGTCATCATCCTCTCGGCATCAACCTCCTCCCTCCCGC ACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTCTT TCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTACAG GCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCTCC TCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTCCA TGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGGTG TGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCCCC TCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTTCT CGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGAGC CATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTCAT CACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTTCACCCCAG CGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTCCTCCTCTA CTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGACTGTCTAT CCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAG GACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCG CTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGA TATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGA GGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGC CGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCA TCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGG GTCCCAAGCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCA TCGACTCCACCTCCTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACA GGCCGAGCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGA GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTA ATTCTTTATTCGAGGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCT CGCACTGTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGC TGGCATCCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTC CTTCCCAGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTT ACGCATGACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGA AGATCACTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGG CGCTGGTGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGG AAGGGGAGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAG GGAGGGCGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACG GCGAGACACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGG AAGGAAGGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGT GTACTGTTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTG CAAGTCTTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAG GAAGAGGCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATG AGAAGGGTAAGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGA back to topprotein sequence of NO12G00210.2 >NO12G00210.2-protein ID=NO12G00210.2-protein|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp MLFLYAYTLVRAYLLHRRTGRTIVSYRIASPGLSGSSLPGRTSHAMLTLD DLHAAIESFQPDVVVVGAGVAGASVTYHLTHPPSSPSSTYAPPSLPLPRV LLLDAGKAGQGRQRDLAGEPSFLTSDVSSADSSVPHHPDGESSSSSTFPF HPSGTAVFPSSSSSSSSSSTSLPSACQTVKMIVTVYPSSSSSFIAHHGER GARTYLRFASQGVEMQKTLAKRLCMAGDREGEGTGGYGGLVEKGSMYVCS KGEEDAFWEEFQLLRRLMLPEGQREEGRDEAREEPSSSPIRWCEEEEVVA MHGSQAGFTRGIFFPQDAVIDSTSYTHALIQAAVATGRALLLEDCPAVEG VEEEGGREGGREGGVILSFNSLFEEGNTSVVKIRVPRTVIATGGFFLSPS PLAGILRPCFSYLAAVPSLPSQPPSGPSPNFFTFGFTHDWCVVASGHVRV SGEDHFSALKPPRRKARSRALVEWVRARYGGKEGGRKGRIRVADASELRA GGREGEEEEVLGNARHGVYGETPDSLPLVGSDGKRGKEGEKKGGKGGGKG RLVYCLGCNAWGQSSLTYAASLVPGLLGYRELSAEQEEAARLMSVRRFRR DR* back to topmRNA from alignment at chr12:59831..61970+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00210.2 ID=NO12G00210.2|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp|location=Sequence derived from alignment at chr12:59831..61970+ (Nannochloropsis oceanica) AGGACGCGGGTAGTCGCTTCCTGTATTGTGTTGATAACGTTGTAATTTAA
GGAAGAAGCATGTGTCATCATCCTCTCGGCATCAACCTCCTCCCTCCCGC
ACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTCTT
TCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTACAG
GCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCTCC
TCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTCCA
TGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGGTG
TGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCCCC
TCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTTCT
CGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGAGC
CATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTCAT
CACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTTCACCCCAG
CGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTCCTCCTCTA
CTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGACTGTCTAT
CCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAG
GACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCG
CTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGA
TATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGA
GGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGC
CGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCA
TCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGG
GTCCCAAGCAGGTATGTAAGCCATCCCCGACTCCCCCCCCCTCCCCCTAT
TCCCTCTCCTTCACATCATCCTGACGCTTCTACTTCTCCTCCTCCGTATT
TTTCTCCTCCCCTCCCCGTCCCTCGCTCCTTCTATCCCTCCCTCATTTCC
TCCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCATCGACT
CCACCTCCTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACAGGCCGA
GCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTAATTCTT
TATTCGAGGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCTCGCACT
GTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGCTGGCAT
CCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTCCTTCCC
AGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTTACGCAT
GACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGAAGATCA
CTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGGCGCTGG
TGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGGAAGGGG
AGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAGGGAGGG
CGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACGGCGAGA
CACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGGAAGGAA
GGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGTGTACTG
TTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTGCAAGTC
TTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAGGAAGAG
GCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATGAGAAGG
GTAAGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGA back to topCoding sequence (CDS) from alignment at chr12:59831..61970+ >NO12G00210.2 ID=NO12G00210.2|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at chr12:59831..61970+ (Nannochloropsis oceanica) ATGCTCTTTCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAG GCGTACAGGCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTT CCGGCTCCTCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGAC GATCTCCATGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGG TGCAGGTGTGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCT CCTCCCCCTCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTC CTGCTTCTCGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGC TGGGGAGCCATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCG TTCCTCATCACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTT CACCCCAGCGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTC CTCCTCTACTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGA CTGTCTATCCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGG GGCGCGAGGACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAA AACGCTCGCTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGA CAGGAGGATATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGC AAAGGGGAGGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCT GATGCTGCCGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGG AGCCGTCATCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCA ATGCATGGGTCCCAAGCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGA CGCCGTCATCGACTCCACCTCCTACACTCATGCCCTGATCCAAGCTGCCG TCGCCACAGGCCGAGCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGG GTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTT ATCATTTAATTCTTTATTCGAGGAAGGCAACACATCTGTTGTCAAGATAA GAGTGCCTCGCACTGTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCC CCCCTCGCTGGCATCCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCC ATCCCTTCCTTCCCAGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGT TCGGGTTTACGCATGACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTG AGTGGTGAAGATCACTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACG TTCACGGGCGCTGGTGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGG GAGGGAGGAAGGGGAGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCG GGAGGGAGGGAGGGCGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGG AGTGTACGGCGAGACACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGA AGAGAGGGAAGGAAGGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGG CGGCTGGTGTACTGTTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGAC GTACGCTGCAAGTCTTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGG CCGAGCAGGAAGAGGCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGA GATCGATGA back to top
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