NO12G00210.2, NO12G00210.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00210.2
Unique NameNO12G00210.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1996
Alignment locationchr12:59831..61970 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:59831..61970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00210.2 vs.
Match: XP_001032465.1 (FAD-dependent oxidoreductase [Tetrahymena thermophila SB210]; EAR84802.1 FAD-dependent oxidoreductase [Tetrahymena thermophila SB210])

HSP 1 Score: 240.0 bits (611), Expect = 2.000e-59
Identity = 185/549 (33.70%), Postives = 272/549 (49.54%), Query Frame = 0
Query:   60 QPDVVVVGAGVAGASVTYHLTHPPSSPSSTYAPPSLPLPRVLLLDAGKAGQGR-QRDLAGEPSFLTSDVSSADSSVPHHPDGESSSSSTFPFHPSGTAVFPSSSSSSSSSSTSLPSACQTVKMIVTVYPSSSSSFIAHHGERGARTYLRFASQGVEMQKTLAKRLCMAGDREGEGTGGYGGLVEKGSMYVCSKGEEDAFWEEFQLLRRLMLPEGQREEGRDEAREEPSSSPIRWCEEEEVVAMHGSQAGFTRGIFFPQDAVIDSTSYTHALIQAAVATGRAL-LLEDCPAVEGVE--EEGGREGGREGGVILSFNSLFEEGNTSVVKIRVPRTVIATGGFFLSPSPLAGILRPCFSYLAAVPSLPS------QPPSGPSPNFFTFGFTHDWCVVASGHVRVSGEDHFSALKPPRRKARSRALVEWVRARYGGKEGGRKGRIRVADASELRAGGREGEEEEVLGNARHGVYGETPDSLPLVGSDGKRGKEGEKKGGKGGGKGRLVYCLGCNAWGQSSLTYAASLVPGLLGYRELSAEQEEAARLMSVRRF 599
            Q +V++VGAGV+GA+  Y L                 +  V+++D GK+GQG  Q     + ++L  D              + + S  F +           +S S S+    P++  T+KM+V +YPS+S  +I HHG  GA  YL+ A  G+++Q  LA+   +A ++E         LV+KGS+YVC + + + F EEF+LL++L                        W +E+      G Q  F  GI+FP D+VI+S  ++  LIQ  +    +  L E+ P V  V+  +EG      E GV++  N +                V+ TGG F  P+ LAGIL PC+SYL ++    S      + P   S NFFT+GFTHDWC +  GH+R SGEDHFSALKPPR   R  +L  W                 V     L+       + E+  + ++GVY ETPDS PLVG+   + K              + Y LGCNAWGQ+SL+Y+ASLVPGLLGY  L+ +Q+++ +L+++RRF
Sbjct:   15 QCEVLIVGAGVSGATAFYSLQ-------------KAGVKNVVIVDTGKSGQGNDQGQTTSQHAYLRED--------------DVNQSRVFEY-----------ASKSGSAVMDYPTS--TIKMMVNLYPSTSKDYIQHHGFNGAVRYLKLAHTGLQIQSELAQ---IAFEKEQLNE----NLVQKGSLYVCEEKDVEDFKEEFELLKKL-----------------GCKGVELWDQEKVWKHAGGPQTKFVLGIYFPNDSVINSQLFSSKLIQNVLKIEPSYSLFENTPQVVNVKTSKEGFALTKLENGVVIKSNYV----------------VVCTGGLFNDPN-LAGILIPCYSYLVSLKEPESTKNDKNRLPYPNSLNFFTWGFTHDWC-LTKGHLRCSGEDHFSALKPPRDAERCASLARWT----------------VEKLPYLK-------DSELNCDKKYGVYSETPDSTPLVGTMSPQSK--------------VCYVLGCNAWGQASLSYSASLVPGLLGYTNLNDDQKDSLKLLTIRRF 444          
The following BLAST results are available for this feature:
BLAST of NO12G00210.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_001032465.12.000e-5933.70FAD-dependent oxidoreductase [Tetrahymena thermoph... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00210NO12G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00210.2NO12G00210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00210.2.cds1NO12G00210.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00210.2.cds2NO12G00210.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00210.2 ID=NO12G00210.2|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp
AGGACGCGGGTAGTCGCTTCCTGTATTGTGTTGATAACGTTGTAATTTAA
GGAAGAAGCATGTGTCATCATCCTCTCGGCATCAACCTCCTCCCTCCCGC
ACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTCTT
TCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTACAG
GCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCTCC
TCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTCCA
TGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGGTG
TGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCCCC
TCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTTCT
CGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGAGC
CATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTCAT
CACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTTCACCCCAG
CGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTCCTCCTCTA
CTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGACTGTCTAT
CCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAG
GACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCG
CTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGA
TATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGA
GGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGC
CGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCA
TCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGG
GTCCCAAGCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCA
TCGACTCCACCTCCTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACA
GGCCGAGCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGA
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTA
ATTCTTTATTCGAGGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCT
CGCACTGTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGC
TGGCATCCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTC
CTTCCCAGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTT
ACGCATGACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGA
AGATCACTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGG
CGCTGGTGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGG
AAGGGGAGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAG
GGAGGGCGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACG
GCGAGACACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGG
AAGGAAGGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGT
GTACTGTTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTG
CAAGTCTTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAG
GAAGAGGCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATG
AGAAGGGTAAGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGA
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protein sequence of NO12G00210.2

>NO12G00210.2-protein ID=NO12G00210.2-protein|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp
MLFLYAYTLVRAYLLHRRTGRTIVSYRIASPGLSGSSLPGRTSHAMLTLD
DLHAAIESFQPDVVVVGAGVAGASVTYHLTHPPSSPSSTYAPPSLPLPRV
LLLDAGKAGQGRQRDLAGEPSFLTSDVSSADSSVPHHPDGESSSSSTFPF
HPSGTAVFPSSSSSSSSSSTSLPSACQTVKMIVTVYPSSSSSFIAHHGER
GARTYLRFASQGVEMQKTLAKRLCMAGDREGEGTGGYGGLVEKGSMYVCS
KGEEDAFWEEFQLLRRLMLPEGQREEGRDEAREEPSSSPIRWCEEEEVVA
MHGSQAGFTRGIFFPQDAVIDSTSYTHALIQAAVATGRALLLEDCPAVEG
VEEEGGREGGREGGVILSFNSLFEEGNTSVVKIRVPRTVIATGGFFLSPS
PLAGILRPCFSYLAAVPSLPSQPPSGPSPNFFTFGFTHDWCVVASGHVRV
SGEDHFSALKPPRRKARSRALVEWVRARYGGKEGGRKGRIRVADASELRA
GGREGEEEEVLGNARHGVYGETPDSLPLVGSDGKRGKEGEKKGGKGGGKG
RLVYCLGCNAWGQSSLTYAASLVPGLLGYRELSAEQEEAARLMSVRRFRR
DR*
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mRNA from alignment at chr12:59831..61970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00210.2 ID=NO12G00210.2|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp|location=Sequence derived from alignment at chr12:59831..61970+ (Nannochloropsis oceanica)
AGGACGCGGGTAGTCGCTTCCTGTATTGTGTTGATAACGTTGTAATTTAA GGAAGAAGCATGTGTCATCATCCTCTCGGCATCAACCTCCTCCCTCCCGC ACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTCTT TCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTACAG GCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCTCC TCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTCCA TGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGGTG TGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCCCC TCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTTCT CGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGAGC CATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTCAT CACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTTCACCCCAG CGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTCCTCCTCTA CTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGACTGTCTAT CCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAG GACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCG CTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGA TATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGA GGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGC CGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCA TCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGG GTCCCAAGCAGGTATGTAAGCCATCCCCGACTCCCCCCCCCTCCCCCTAT TCCCTCTCCTTCACATCATCCTGACGCTTCTACTTCTCCTCCTCCGTATT TTTCTCCTCCCCTCCCCGTCCCTCGCTCCTTCTATCCCTCCCTCATTTCC TCCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCATCGACT CCACCTCCTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACAGGCCGA GCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGAGGAGGG AGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTAATTCTT TATTCGAGGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCTCGCACT GTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGCTGGCAT CCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTCCTTCCC AGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTTACGCAT GACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGAAGATCA CTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGGCGCTGG TGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGGAAGGGG AGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAGGGAGGG CGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACGGCGAGA CACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGGAAGGAA GGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGTGTACTG TTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTGCAAGTC TTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAGGAAGAG GCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATGAGAAGG GTAAGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGA
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Coding sequence (CDS) from alignment at chr12:59831..61970+

>NO12G00210.2 ID=NO12G00210.2|Name=NO12G00210.2|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at chr12:59831..61970+ (Nannochloropsis oceanica)
ATGCTCTTTCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAG
GCGTACAGGCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTT
CCGGCTCCTCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGAC
GATCTCCATGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGG
TGCAGGTGTGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCT
CCTCCCCCTCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTC
CTGCTTCTCGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGC
TGGGGAGCCATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCG
TTCCTCATCACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTT
CACCCCAGCGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTC
CTCCTCTACTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGA
CTGTCTATCCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGG
GGCGCGAGGACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAA
AACGCTCGCTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGA
CAGGAGGATATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGC
AAAGGGGAGGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCT
GATGCTGCCGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGG
AGCCGTCATCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCA
ATGCATGGGTCCCAAGCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGA
CGCCGTCATCGACTCCACCTCCTACACTCATGCCCTGATCCAAGCTGCCG
TCGCCACAGGCCGAGCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGG
GTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTT
ATCATTTAATTCTTTATTCGAGGAAGGCAACACATCTGTTGTCAAGATAA
GAGTGCCTCGCACTGTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCC
CCCCTCGCTGGCATCCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCC
ATCCCTTCCTTCCCAGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGT
TCGGGTTTACGCATGACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTG
AGTGGTGAAGATCACTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACG
TTCACGGGCGCTGGTGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGG
GAGGGAGGAAGGGGAGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCG
GGAGGGAGGGAGGGCGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGG
AGTGTACGGCGAGACACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGA
AGAGAGGGAAGGAAGGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGG
CGGCTGGTGTACTGTTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGAC
GTACGCTGCAAGTCTTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGG
CCGAGCAGGAAGAGGCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGA
GATCGATGA
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Synonyms
Publications