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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:14766..16516 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00080.2 vs.
Match: EWM26012.1 (fatty acid hydroxylase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 287.0 bits (733), Expect = 8.200e-74 Identity = 170/336 (50.60%), Postives = 208/336 (61.90%), Query Frame = 0
Query: 25 ACFVLPSTPLLP---SPASIPRQYFDRRPSSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPL---PEERRGRMGPL---QAIQTWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATLRFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRL-LSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGTYWLMGLLYEWAHFSVHTRVRPRTALGKAVKAHHTKHHLKCDGLWFAFSWPWIDTVMGTVPGRE 351
A F+LP+ P LP P F RRP++ + + P+ + +H L P + R + P A+ + + P+S P S S + PSP K LVD RQL + DF+VP TL +AL++FF+HPSI+LIL G+A L GR S P SL + E +L+ LT+ GW+LQEW LHRFLLHSS W GREIHAQHHALPFYHVSIDPPLLV VWGA+AC GW+ +P+P VWTVLGTYW+MGL YEWAHFSVHTRVRPRTALGKA+KAHHTKHHL + WFAFSWP ID +GTVP +E
Sbjct: 32 ASFILPTRPSLPFLLQHTVDPTSNFPRRPTTSTSWQVSTIA---SSQPVGNTYWTQQHLNSLSLVNTPGQTRKLIVPAGKKPAVDSH-SISTLPVSAPRGSLPSQTSLLPSP-------KRLVDARQLPPSVVHQNL-ATDFSVPRTLSAALWMFFTHPSILLILCGLAGLVAGRFSFSGP--SSSLLQIFLECSLVLLTIVGWILQEWFLHRFLLHSSFDWFGREIHAQHHALPFYHVSIDPPLLVGVWGAIACILGWVFVPRPLVWTVLGTYWIMGLFYEWAHFSVHTRVRPRTALGKAIKAHHTKHHLLDERFWFAFSWPMIDASLGTVPAKE 353
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00080.2 ID=NO12G00080.2|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp AACACACAGGATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAG CAGCAGCTGCTGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCG TCAACACCCCTCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGA TCGTAGGCCTTCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCAC CTTTCACAGTCTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCA GAAAGACAGCCACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCA GGCCATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCC ACCGCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGC TCTACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGA CGCAACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGC CCTCCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTT GTTGGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCT TCCTCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGA CCGTGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTC CACAGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGC CCTCCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTAT GGGGCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGG GTTTGGACCGTGCTGGGGACCTACTGGCTCATGGGACTGTTGTACGAGTG GGCACACTTCAGCGTGCACACTCGCGTTCGACCCCGCACTGCTCTCGGCA AGGCAGTCAAAGCCCACCACACCAAGCACCACCTGAAGTGTGACGGCCTT TGGTTCGCCTTTTCTTGGCCATGGATCGACACCGTGATGGGGACGGTTCC AGGGAGGGAGGGAGGGTGAAGAAAGGGAGGAGGGGTGGGAGGGAGGGAGG GAGGCCTAGCTCCAGGGCGAGCAAGTAGAGCGAGCGATTGAGGGCCACCA GACTAAGCATGGAATGATTGAACGAGTAAGAGGCTGGTTGCAGCGCTTCA CGCCGGCCTCAGATGAAGAAAACACTCGGGACGATGGCCGGCAATGTGTA TATACATGAAAGGGAAGTAGAATACAAACGACGAATGCATAAAATGACAA GCGCCAGCGAATGCAGATGTAATTAAACGTTAAGCAATTGCTGCCCCAGG TCGTCGGAAAGGGAAGAAGGAAACGAAAGAGACGCGCGCGGT back to topprotein sequence of NO12G00080.2 >NO12G00080.2-protein ID=NO12G00080.2-protein|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp MANIACCTTAAAAAAAAGGALISRACFVLPSTPLLPSPASIPRQYFDRRP SSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPLPEERRGRMGPLQAIQ TWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATL RFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPS LPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPF YHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGTYWLMGLLYEWAHF SVHTRVRPRTALGKAVKAHHTKHHLKCDGLWFAFSWPWIDTVMGTVPGRE GG* back to topmRNA from alignment at chr12:14766..16516+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00080.2 ID=NO12G00080.2|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp|location=Sequence derived from alignment at chr12:14766..16516+ (Nannochloropsis oceanica) AACACACAGGATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAG
CAGCAGCTGCTGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCG
TCAACACCCCTCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGA
TCGTAGGCCTTCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCAC
CTTTCACAGTCTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCA
GAAAGACAGCCACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCA
GGTATGTACGTCGCCAACCCTGATATCTGCCTTCATCTTTCCCGCGCATG
CCGGGCCGGAGCCTTGATGAAAAATTATTGAAAGCAAGCCATGCATTTTC
TCATATTCGCTCATTCCCTTTTTCGAACCTGCCGCTGTCATCTCCTTCTG
CCCACTCTCTTCGTTCCTCCCACTTCCCCCACCCGACCCCACCCTCAGGC
CATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCCACC
GCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCT
ACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGC
AACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCT
CCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTT
GGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCC
TCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCG
TGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCAC
AGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCT
CCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGG
GCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTT
TGGACCGTGCTGGGGGTCAGTTCAGGGAGGGAGAAAGGAAAGGAGAGGGC
AACGAGAGGGGGAGACGAGCGAGGGAAGGAAACAATAATTTGATATTTGC
ATGATCTTGAAAGGATCAGTCATCATTGTCCGCCTCATACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCCAGACCTACTGGCTCATGGGACTGTT
GTACGAGTGGGCACACTTCAGCGTGCACACTCGCGTTCGACCCCGCACTG
CTCTCGGCAAGGCAGTCAAAGCCCACCACACCAAGCACCACCTGAAGTGT
GACGGCCTTTGGTTCGCCTTTTCTTGGCCATGGATCGACACCGTGATGGG
GACGGTTCCAGGGAGGGAGGGAGGGTGAAGAAAGGGAGGAGGGGTGGGAG
GGAGGGAGGGAGGCCTAGCTCCAGGGCGAGCAAGTAGAGCGAGCGATTGA
GGGCCACCAGACTAAGCATGGAATGATTGAACGAGTAAGAGGCTGGTTGC
AGCGCTTCACGCCGGCCTCAGATGAAGAAAACACTCGGGACGATGGCCGG
CAATGTGTATATACATGAAAGGGAAGTAGAATACAAACGACGAATGCATA
AAATGACAAGCGCCAGCGAATGCAGATGTAATTAAACGTTAAGCAATTGC
TGCCCCAGGTCGTCGGAAAGGGAAGAAGGAAACGAAAGAGACGCGCGCGG
T back to topCoding sequence (CDS) from alignment at chr12:14766..16516+ >NO12G00080.2 ID=NO12G00080.2|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr12:14766..16516+ (Nannochloropsis oceanica) ATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAGCAGCAGCTGC TGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCGTCAACACCCC TCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGATCGTAGGCCT TCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCACCTTTCACAGT CTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCAGAAAGACAGC CACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCAGGCCATACAG ACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCCACCGCTCATC TTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCTACAACAA GCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGCAACTCTC CGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCTCCGCCCT CTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTTGGCATCG CCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCCTCCCTCC CTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCGTGGCAGG CTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCACAGCTCTC TCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCTCCCCTTC TACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGGGCGCAGT AGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTTTGGACCG TGCTGGGGACCTACTGGCTCATGGGACTGTTGTACGAGTGGGCACACTTC AGCGTGCACACTCGCGTTCGACCCCGCACTGCTCTCGGCAAGGCAGTCAA AGCCCACCACACCAAGCACCACCTGAAGTGTGACGGCCTTTGGTTCGCCT TTTCTTGGCCATGGATCGACACCGTGATGGGGACGGTTCCAGGGAGGGAG GGAGGGTGA back to top
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