NO12G00080.2, NO12G00080.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00080.2
Unique NameNO12G00080.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1392
Alignment locationchr12:14766..16516 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:14766..16516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00080.2 vs.
Match: EWM26012.1 (fatty acid hydroxylase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 287.0 bits (733), Expect = 8.200e-74
Identity = 170/336 (50.60%), Postives = 208/336 (61.90%), Query Frame = 0
Query:   25 ACFVLPSTPLLP---SPASIPRQYFDRRPSSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPL---PEERRGRMGPL---QAIQTWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATLRFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRL-LSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGTYWLMGLLYEWAHFSVHTRVRPRTALGKAVKAHHTKHHLKCDGLWFAFSWPWIDTVMGTVPGRE 351
            A F+LP+ P LP        P   F RRP++      +      +  P+    +  +H     L   P + R  + P     A+ +  +    P+S P  S  S +   PSP       K LVD RQL          + DF+VP TL +AL++FF+HPSI+LIL G+A L  GR   S P    SL  +  E +L+ LT+ GW+LQEW LHRFLLHSS  W GREIHAQHHALPFYHVSIDPPLLV VWGA+AC  GW+ +P+P VWTVLGTYW+MGL YEWAHFSVHTRVRPRTALGKA+KAHHTKHHL  +  WFAFSWP ID  +GTVP +E
Sbjct:   32 ASFILPTRPSLPFLLQHTVDPTSNFPRRPTTSTSWQVSTIA---SSQPVGNTYWTQQHLNSLSLVNTPGQTRKLIVPAGKKPAVDSH-SISTLPVSAPRGSLPSQTSLLPSP-------KRLVDARQLPPSVVHQNL-ATDFSVPRTLSAALWMFFTHPSILLILCGLAGLVAGRFSFSGP--SSSLLQIFLECSLVLLTIVGWILQEWFLHRFLLHSSFDWFGREIHAQHHALPFYHVSIDPPLLVGVWGAIACILGWVFVPRPLVWTVLGTYWIMGLFYEWAHFSVHTRVRPRTALGKAIKAHHTKHHLLDERFWFAFSWPMIDASLGTVPAKE 353          
The following BLAST results are available for this feature:
BLAST of NO12G00080.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26012.18.200e-7450.60fatty acid hydroxylase-like protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00080NO12G00080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00080.2NO12G00080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00080.2.cds1NO12G00080.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00080.2.cds2NO12G00080.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00080.2.cds3NO12G00080.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00080.2 ID=NO12G00080.2|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp
AACACACAGGATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAG
CAGCAGCTGCTGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCG
TCAACACCCCTCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGA
TCGTAGGCCTTCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCAC
CTTTCACAGTCTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCA
GAAAGACAGCCACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCA
GGCCATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCC
ACCGCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGC
TCTACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGA
CGCAACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGC
CCTCCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTT
GTTGGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCT
TCCTCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGA
CCGTGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTC
CACAGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGC
CCTCCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTAT
GGGGCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGG
GTTTGGACCGTGCTGGGGACCTACTGGCTCATGGGACTGTTGTACGAGTG
GGCACACTTCAGCGTGCACACTCGCGTTCGACCCCGCACTGCTCTCGGCA
AGGCAGTCAAAGCCCACCACACCAAGCACCACCTGAAGTGTGACGGCCTT
TGGTTCGCCTTTTCTTGGCCATGGATCGACACCGTGATGGGGACGGTTCC
AGGGAGGGAGGGAGGGTGAAGAAAGGGAGGAGGGGTGGGAGGGAGGGAGG
GAGGCCTAGCTCCAGGGCGAGCAAGTAGAGCGAGCGATTGAGGGCCACCA
GACTAAGCATGGAATGATTGAACGAGTAAGAGGCTGGTTGCAGCGCTTCA
CGCCGGCCTCAGATGAAGAAAACACTCGGGACGATGGCCGGCAATGTGTA
TATACATGAAAGGGAAGTAGAATACAAACGACGAATGCATAAAATGACAA
GCGCCAGCGAATGCAGATGTAATTAAACGTTAAGCAATTGCTGCCCCAGG
TCGTCGGAAAGGGAAGAAGGAAACGAAAGAGACGCGCGCGGT
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protein sequence of NO12G00080.2

>NO12G00080.2-protein ID=NO12G00080.2-protein|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MANIACCTTAAAAAAAAGGALISRACFVLPSTPLLPSPASIPRQYFDRRP
SSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPLPEERRGRMGPLQAIQ
TWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATL
RFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPS
LPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPF
YHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGTYWLMGLLYEWAHF
SVHTRVRPRTALGKAVKAHHTKHHLKCDGLWFAFSWPWIDTVMGTVPGRE
GG*
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mRNA from alignment at chr12:14766..16516+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00080.2 ID=NO12G00080.2|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp|location=Sequence derived from alignment at chr12:14766..16516+ (Nannochloropsis oceanica)
AACACACAGGATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAG CAGCAGCTGCTGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCG TCAACACCCCTCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGA TCGTAGGCCTTCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCAC CTTTCACAGTCTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCA GAAAGACAGCCACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCA GGTATGTACGTCGCCAACCCTGATATCTGCCTTCATCTTTCCCGCGCATG CCGGGCCGGAGCCTTGATGAAAAATTATTGAAAGCAAGCCATGCATTTTC TCATATTCGCTCATTCCCTTTTTCGAACCTGCCGCTGTCATCTCCTTCTG CCCACTCTCTTCGTTCCTCCCACTTCCCCCACCCGACCCCACCCTCAGGC CATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCCACC GCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCT ACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGC AACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCT CCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTT GGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCC TCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCG TGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCAC AGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCT CCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGG GCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTT TGGACCGTGCTGGGGGTCAGTTCAGGGAGGGAGAAAGGAAAGGAGAGGGC AACGAGAGGGGGAGACGAGCGAGGGAAGGAAACAATAATTTGATATTTGC ATGATCTTGAAAGGATCAGTCATCATTGTCCGCCTCATACCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCCAGACCTACTGGCTCATGGGACTGTT GTACGAGTGGGCACACTTCAGCGTGCACACTCGCGTTCGACCCCGCACTG CTCTCGGCAAGGCAGTCAAAGCCCACCACACCAAGCACCACCTGAAGTGT GACGGCCTTTGGTTCGCCTTTTCTTGGCCATGGATCGACACCGTGATGGG GACGGTTCCAGGGAGGGAGGGAGGGTGAAGAAAGGGAGGAGGGGTGGGAG GGAGGGAGGGAGGCCTAGCTCCAGGGCGAGCAAGTAGAGCGAGCGATTGA GGGCCACCAGACTAAGCATGGAATGATTGAACGAGTAAGAGGCTGGTTGC AGCGCTTCACGCCGGCCTCAGATGAAGAAAACACTCGGGACGATGGCCGG CAATGTGTATATACATGAAAGGGAAGTAGAATACAAACGACGAATGCATA AAATGACAAGCGCCAGCGAATGCAGATGTAATTAAACGTTAAGCAATTGC TGCCCCAGGTCGTCGGAAAGGGAAGAAGGAAACGAAAGAGACGCGCGCGG T
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Coding sequence (CDS) from alignment at chr12:14766..16516+

>NO12G00080.2 ID=NO12G00080.2|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr12:14766..16516+ (Nannochloropsis oceanica)
ATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAGCAGCAGCTGC
TGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCGTCAACACCCC
TCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGATCGTAGGCCT
TCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCACCTTTCACAGT
CTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCAGAAAGACAGC
CACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCAGGCCATACAG
ACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCCACCGCTCATC
TTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCTACAACAA
GCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGCAACTCTC
CGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCTCCGCCCT
CTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTTGGCATCG
CCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCCTCCCTCC
CTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCGTGGCAGG
CTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCACAGCTCTC
TCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCTCCCCTTC
TACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGGGCGCAGT
AGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTTTGGACCG
TGCTGGGGACCTACTGGCTCATGGGACTGTTGTACGAGTGGGCACACTTC
AGCGTGCACACTCGCGTTCGACCCCGCACTGCTCTCGGCAAGGCAGTCAA
AGCCCACCACACCAAGCACCACCTGAAGTGTGACGGCCTTTGGTTCGCCT
TTTCTTGGCCATGGATCGACACCGTGATGGGGACGGTTCCAGGGAGGGAG
GGAGGGTGA
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Synonyms
Publications