NO12G00060.1, NO12G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00060.1
Unique NameNO12G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1384
Alignment locationchr12:10908..12794 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:10908..12794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00060.1 vs.
Match: EWM26018.1 (hypothetical protein Naga_100150g5 [Nannochloropsis gaditana])

HSP 1 Score: 259.6 bits (662), Expect = 7.600e-66
Identity = 125/173 (72.25%), Postives = 144/173 (83.24%), Query Frame = 0 
Query:   14 ASLKKVRKGKGSLWSSLLLKYPGAVVMGLLSLAFCVVISLWQPLSPEQFARQWFENGGFLPQCNQALAFAKGASELRCYAKATLADRSTNRGLFGLNSYNSSHVSDECAYDCACSLRILSSLANDRLDREAFSRHINNTGVNIEALLGDAGPPCNTVAEGLILEGWSMLQIQG 187
            A +K+ R  KG   +SL+ KYPGA+ MGLLSLAFC ++S W+PLS EQFARQWFENGGFLPQCNQAL FAK ASELRCYAK  LAD S NRGLFG NS NSSH+SD CAYDCACS R LSSLAN+R DR+  SR++N+TG+N+ +++GDAGPPCN VAE LILEGWSMLQIQG
Sbjct:   21 AVMKRGRNSKGI--ASLIGKYPGALAMGLLSLAFCWIVSFWRPLSSEQFARQWFENGGFLPQCNQALTFAKAASELRCYAKNILADGSVNRGLFGFNSKNSSHISDACAYDCACSFRALSSLANNRQDRKTLSRYMNSTGINLGSVIGDAGPPCNAVAEALILEGWSMLQIQG 191
The following BLAST results are available for this feature:
BLAST of NO12G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26018.17.600e-6672.25hypothetical protein Naga_100150g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00060NO12G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00060.1NO12G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00060.1.cds1NO12G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00060.1.cds2NO12G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00060.1.cds3NO12G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00060.1.cds4NO12G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00060.1 ID=NO12G00060.1|Name=NO12G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp
ATAAAATACATAATAATTTCCATCTTGCCTGCTCTGTGTTTGTGAATTGG
AGCGAGGGAGGAGTGAGCGTCAGCCTTGACACGACGTCCATGCGCGGCTT
TCGTAGGAGTCTTTCCTTCCTGAAATAAAAGACAAAGTTCATTTCGTGCA
CAAACAGCAGCTATGTCCACATATTGTGCCTTGCAGACCTCCACCTCCCT
GTCGTCGTCGTGATGGTGTGAAACCTTTTGTGCCTGAGGCACGGTAAAAT
AAGGACATGGCGGGGTTGGAATGCCTCAAAGCAATGTAAAATGTTAGACA
GGAAATTACCAGGAAAAGGCGCTCGCAACTTCCACGCTGACTAAGCACAT
GCATACAAGAGTCATGCACTTACCTGTCAAGTATGGCTACAGTTAATACA
ACAGGAGTACTTGAGTTTCTAGGTATGACCACACTTCGTCGCCAACTCGC
CCATAAAAACTGCAACTTGCTCGGCCATGCTACCCATCTGCCTCACACAA
ACCCTTGACTGCAGGCAGAGAAGCCATGGTGCGCCCTAGCATGGGATCCT
CAGCCGTCGTAGCTGCCTCGTTGAAAAAGGTCCGAAAGGGCAAAGGGTCC
TTGTGGTCGTCACTTCTTCTCAAGTACCCTGGTGCCGTAGTAATGGGCCT
CCTGTCCCTTGCCTTTTGCGTGGTCATCTCCCTTTGGCAGCCACTCTCTC
CGGAGCAATTTGCAAGGCAATGGTTTGAGAATGGTGGCTTCCTTCCACAG
TGCAATCAAGCTCTCGCTTTTGCTAAAGGGGCCTCGGAATTGCGGTGCTA
CGCCAAGGCAACACTGGCAGATAGGAGCACGAACAGAGGCTTGTTCGGCC
TCAATAGTTACAACAGCAGCCACGTCTCGGACGAATGCGCATACGACTGT
GCCTGCTCCCTTCGCATCCTCTCCTCCCTTGCCAACGACAGACTCGACCG
TGAGGCTTTCTCCCGGCACATCAATAATACCGGCGTAAACATCGAGGCCT
TGCTGGGCGACGCAGGCCCTCCCTGCAATACCGTGGCAGAGGGGCTGATC
CTGGAGGGGTGGAGCATGCTGCAGATCCAGGGCGGGAGGCTGGCGGAGTA
GCAGTGAGGGAAGACAAGAGAAAGGGAAGGAGGGAGGGATGCAAGAAGGT
AGGGAGCATGGAGGCTTTGGCACGGGAAAGGGCTTTCTAAAAGGGCAAAG
GAGAGTGTTGAGTGAGAGGGCAGGGAGAGGGTCGCAAAGCCATGAGGGAG
AGGAAGAGGGCGACGGCTTCGGGGGAGAGCGTCGTGCACCTACATAAGAG
AGGGACACGTACTCACAGTCTGTGAAACAAGATCCACACCTTGGCTCAAC
GTCAGTCACGGCTTGCTTACTTCGCAGCATTCGT
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protein sequence of NO12G00060.1

>NO12G00060.1-protein ID=NO12G00060.1-protein|Name=NO12G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MVRPSMGSSAVVAASLKKVRKGKGSLWSSLLLKYPGAVVMGLLSLAFCVV
ISLWQPLSPEQFARQWFENGGFLPQCNQALAFAKGASELRCYAKATLADR
STNRGLFGLNSYNSSHVSDECAYDCACSLRILSSLANDRLDREAFSRHIN
NTGVNIEALLGDAGPPCNTVAEGLILEGWSMLQIQGGRLAE*
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mRNA from alignment at chr12:10908..12794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00060.1 ID=NO12G00060.1|Name=NO12G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at chr12:10908..12794+ (Nannochloropsis oceanica)
ATAAAATACATAATAATTTCCATCTTGCCTGCTCTGTGTTTGTGAATTGG
AGCGAGGGAGGAGTGAGCGTCAGCCTTGACACGACGTCCATGCGCGGCTT
TCGTAGGAGTCTTTCCTTCCTGAAATAAAAGACAAAGTTCATTTCGTGCA
CAAACAGCAGCTATGTCCACATATTGTGCCTTGCAGACCTCCACCTCCCT
GTCGTCGTCGTGATGGTGTGAAACCTTTTGTGCCTGAGGCACGGTAAAAT
AAGGACATGGCGGGGTTGGAATGCCTCAAAGCAATGTAAAATGTTAGACA
GGAAATTACCAGGAAAAGGCGCTCGCAACTTCCACGCTGACTAAGCACAT
GCATACAAGAGTCATGCACTTACCTGTCAAGTATGGCTACAGTTAATACA
ACAGGAGTACTTGAGTTTCTAGGTATGACCACACTTCGTCGCCAACTCGC
CCATAAAAACTGCAACTTGCTCGGCCATGCTACCCATCTGCCTCACACAA
ACCCTTGACTGCAGGCAGAGAAGCCATGGTGCGCCCTAGCATGGGATCCT
CAGCCGTCGTAGCTGCCTCGTTGAAAAAGGTCCGAAAGGGCAAAGGGTCC
TTGTGGTCGTCACTTCTTCTCAAGTACCCTGGTGCCGTAGTAATGGGCCT
CCTGTCCCTTGCCTTTTGCGTGGTCATCTCCCTTTGGCAGCCACTCTCTC
CGGAGCAATTTGCAAGGCAATGGTACGTATGTAGTAAGTAGGGACTAAAA
AGAAGGGTTACAAGTCATGTACGAGGATCGCTCTGAGAGAAGTGAGAGAG
CGGGAAAGCTGACAGACTGCTGCTCTGCACGATTCCCTCCCGCCCTCTTC
CCCCCTCCGACGCTATCCCCTCCCCTACATATTTATCGATCAGGTTTGAG
AATGGTGGCTTCCTTCCACAGTGCAATCAAGCTCTCGCTTTTGCTAAAGG
GGCCTCGGAATTGCGGTGCTACGCCAAGGCAACACTGGCAGATAGGAGCA
CGAACAGAGGTACGTTGTGACCCAAACACAAGGGAGTGGAAAGAGGAGTC
GTAAGACATTCGAGAAAGGAGATGACTTGTAATCCCTTGTCATAATTGAC
GGAAGTGAGATAAGGAGGTGGGGTAAGATAAAGGGCGAGGAATGTAGCAT
ACCTGTTGATTGACATAACTGATCCAACCACTTACAGGCTTGTTCGGCCT
CAATAGTTACAACAGCAGCCACGTCTCGGACGAATGCGCATGTACGTATT
CAAGTGATATAAGCTCTGCTTGATCTTCCCCTTTCCCTTCCCCTCCTACA
CTACATCCCTCTTCCTCCCTGCCTCTTTCCACTCATCTACTACCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTTCTCATTCCTTTCCTCCTTCAGACGAC
TGTGCCTGCTCCCTTCGCATCCTCTCCTCCCTTGCCAACGACAGACTCGA
CCGTGAGGCTTTCTCCCGGCACATCAATAATACCGGCGTAAACATCGAGG
CCTTGCTGGGCGACGCAGGCCCTCCCTGCAATACCGTGGCAGAGGGGCTG
ATCCTGGAGGGGTGGAGCATGCTGCAGATCCAGGGCGGGAGGCTGGCGGA
GTAGCAGTGAGGGAAGACAAGAGAAAGGGAAGGAGGGAGGGATGCAAGAA
GGTAGGGAGCATGGAGGCTTTGGCACGGGAAAGGGCTTTCTAAAAGGGCA
AAGGAGAGTGTTGAGTGAGAGGGCAGGGAGAGGGTCGCAAAGCCATGAGG
GAGAGGAAGAGGGCGACGGCTTCGGGGGAGAGCGTCGTGCACCTACATAA
GAGAGGGACACGTACTCACAGTCTGTGAAACAAGATCCACACCTTGGCTC
AACGTCAGTCACGGCTTGCTTACTTCGCAGCATTCGT
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Coding sequence (CDS) from alignment at chr12:10908..12794+

>NO12G00060.1 ID=NO12G00060.1|Name=NO12G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr12:10908..12794+ (Nannochloropsis oceanica)
ATGGTGCGCCCTAGCATGGGATCCTCAGCCGTCGTAGCTGCCTCGTTGAA
AAAGGTCCGAAAGGGCAAAGGGTCCTTGTGGTCGTCACTTCTTCTCAAGT
ACCCTGGTGCCGTAGTAATGGGCCTCCTGTCCCTTGCCTTTTGCGTGGTC
ATCTCCCTTTGGCAGCCACTCTCTCCGGAGCAATTTGCAAGGCAATGGTT
TGAGAATGGTGGCTTCCTTCCACAGTGCAATCAAGCTCTCGCTTTTGCTA
AAGGGGCCTCGGAATTGCGGTGCTACGCCAAGGCAACACTGGCAGATAGG
AGCACGAACAGAGGCTTGTTCGGCCTCAATAGTTACAACAGCAGCCACGT
CTCGGACGAATGCGCATACGACTGTGCCTGCTCCCTTCGCATCCTCTCCT
CCCTTGCCAACGACAGACTCGACCGTGAGGCTTTCTCCCGGCACATCAAT
AATACCGGCGTAAACATCGAGGCCTTGCTGGGCGACGCAGGCCCTCCCTG
CAATACCGTGGCAGAGGGGCTGATCCTGGAGGGGTGGAGCATGCTGCAGA
TCCAGGGCGGGAGGCTGGCGGAGTAG
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Synonyms
Publications