NO12G00030.1, NO12G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00030.1
Unique NameNO12G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length498
Alignment locationchr12:2845..3694 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:2845..3694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00030.1 vs.
Match: XP_005852718.1 (peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526]; EKU23114.1 peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526]; EWM26023.1 peroxiredoxin-2e- chloroplastic [Nannochloropsis gaditana])

HSP 1 Score: 285.0 bits (728), Expect = 1.500e-73
Identity = 136/165 (82.42%), Postives = 152/165 (92.12%), Query Frame = 0
Query:    1 MTKIAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDLE 166
            M KIAEG +LPL++I FK+LK+G ATD+TGTDLF  GKKVVLFGVPGAFTPTCTNTHAPEYLA Y++FKAKGVDAIYC ASNDCFVTSAWAKSL+AG+K++ILADGDC FAKL+GLTVET GFGGLRLSRFSAL+EDG V KLHLEEGGGY+G SGA+QMLKDLE
Sbjct:    1 MAKIAEGQTLPLEKITFKVLKDGKATDLTGTDLF-KGKKVVLFGVPGAFTPTCTNTHAPEYLAMYESFKAKGVDAIYCIASNDCFVTSAWAKSLDAGDKVSILADGDCGFAKLVGLTVETGGFGGLRLSRFSALVEDGSVKKLHLEEGGGYTGVSGAEQMLKDLE 164          
The following BLAST results are available for this feature:
BLAST of NO12G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852718.11.500e-7382.42peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00030NO12G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00030.1NO12G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00030.1.cds1NO12G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00030.1.cds2NO12G00030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00030.1.cds3NO12G00030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00030.1 ID=NO12G00030.1|Name=NO12G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
ATGACCAAGATTGCGGAAGGTCACTCCCTGCCTCTCGACCAGATCAAGTT
TAAGATACTCAAGGAGGGAAACGCTACGGATGTGACGGGCACAGACTTGT
TCGGGTCGGGTAAGAAGGTTGTGCTCTTTGGCGTACCGGGTGCCTTTACT
CCCACGTGCACCAATACCCATGCCCCGGAGTACCTTGCCAAATACGATGC
TTTCAAGGCCAAGGGCGTCGACGCCATCTACTGCGCGGCGAGCAACGACT
GCTTTGTCACTTCCGCCTGGGCTAAGAGTCTTAACGCCGGTGAGAAGATG
ACGATCCTCGCAGATGGTGATTGCGCGTTTGCCAAACTCATGGGGCTGAC
TGTGGAGACGGAAGGGTTTGGAGGGCTGCGTTTGAGCCGTTTCTCGGCTT
TAATAGAGGATGGTGTGGTGACAAAGCTGCATTTGGAGGAGGGCGGAGGA
TACTCGGGCGCGAGTGGGGCAGACCAGATGCTGAAAGACTTGGAGTAG
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protein sequence of NO12G00030.1

>NO12G00030.1-protein ID=NO12G00030.1-protein|Name=NO12G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTKIAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFT
PTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKM
TILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGG
YSGASGADQMLKDLE*
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mRNA from alignment at chr12:2845..3694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00030.1 ID=NO12G00030.1|Name=NO12G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=850bp|location=Sequence derived from alignment at chr12:2845..3694- (Nannochloropsis oceanica)
ATGACCAAGATTGCGGAAGGTCACTCCCTGCCTCTCGACCAGATCAAGTT TAAGATACTCAAGGAGGGAAACGCTACGGATGTGACGGGCACAGACTTGT TCGGGTCGGGTAAGAAGGTTGTGCTCTTTGGCGTACCGGGTGCCTTTACT CCCACGTGGTGAGTGCTTGTACCAGAGAGAAAATGCTTCGAAGCGGTGGT GTCCTGGGGAAAGAAATTAGATGCTAGAAGGCAAGGGGAGGATAGTAGGG CGCGGTGTGTAGGATAGCTTTCTCACGAAAAGTTTCTTACCCGCACTTTC TTTTTCGTCCTACTTGCCGCCCGAACCCTCCACCCTACCCACCCATCTCC AGCACCAATACCCATGCCCCGGAGTACCTTGCCAAATACGATGCTTTCAA GGCCAAGGTAGAACAAAGTGTCCTTGTCCCAATGACCCGGAACCGCCCAA AATGCCTCCTCTTCTTTCCATCCTTCGATTTTTATGCCTCCTCCCTCCCA CCGCATCCTCGCTCCTTAATCACTTATCTTACAACGCTCTTTCTACCTTT CGTTCCCACTCCCAGGGCGTCGACGCCATCTACTGCGCGGCGAGCAACGA CTGCTTTGTCACTTCCGCCTGGGCTAAGAGTCTTAACGCCGGTGAGAAGA TGACGATCCTCGCAGATGGTGATTGCGCGTTTGCCAAACTCATGGGGCTG ACTGTGGAGACGGAAGGGTTTGGAGGGCTGCGTTTGAGCCGTTTCTCGGC TTTAATAGAGGATGGTGTGGTGACAAAGCTGCATTTGGAGGAGGGCGGAG GATACTCGGGCGCGAGTGGGGCAGACCAGATGCTGAAAGACTTGGAGTAG
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Coding sequence (CDS) from alignment at chr12:2845..3694-

>NO12G00030.1 ID=NO12G00030.1|Name=NO12G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr12:2845..3694- (Nannochloropsis oceanica)
ATGACCAAGATTGCGGAAGGTCACTCCCTGCCTCTCGACCAGATCAAGTT
TAAGATACTCAAGGAGGGAAACGCTACGGATGTGACGGGCACAGACTTGT
TCGGGTCGGGTAAGAAGGTTGTGCTCTTTGGCGTACCGGGTGCCTTTACT
CCCACGTGCACCAATACCCATGCCCCGGAGTACCTTGCCAAATACGATGC
TTTCAAGGCCAAGGGCGTCGACGCCATCTACTGCGCGGCGAGCAACGACT
GCTTTGTCACTTCCGCCTGGGCTAAGAGTCTTAACGCCGGTGAGAAGATG
ACGATCCTCGCAGATGGTGATTGCGCGTTTGCCAAACTCATGGGGCTGAC
TGTGGAGACGGAAGGGTTTGGAGGGCTGCGTTTGAGCCGTTTCTCGGCTT
TAATAGAGGATGGTGTGGTGACAAAGCTGCATTTGGAGGAGGGCGGAGGA
TACTCGGGCGCGAGTGGGGCAGACCAGATGCTGAAAGACTTGGAGTAG
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Synonyms
Publications