|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr11 | genome | chr11:1164886..1167801 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03620.1 vs.
Match: XP_005855631.1 (hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526]; EKU20720.1 hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 404.8 bits (1039), Expect = 4.800e-109 Identity = 206/454 (45.37%), Postives = 288/454 (63.44%), Query Frame = 0
Query: 155 QPNCAWQAFITGGNHANINAAYPDSHCVYQLLVMTKVTEDRIFRVKAKFPTGGNRYFSLQSNNPNVGFPLATIPDFKIKPDPGVNAKGKPWKNPYMAGEEVPDDEVGSYTIYVTPRGDKGYPNEINLCTKEMSAIECGTTNAIVVMRFYTSNPDMGMLNSETDTGDSN-EPRLFGYAGMPVVEVRTCKNGCIGMA-EKWKPFRPCDQSRPTPLTKMIEDNFAKVIPGWGTPSYPDVNDNFIMYMGLDSSSNGVYPNLDANYLVANTWQEAVKGAPGGNPMLVARITGKLPLTAWNFHHDPKTHDYENYEVRYNSFSTIAKLQTAPTIQSVDDSEIRRFYRGKITDWET-TRPYSIVVGPSKGTTCGLYNASNDLFLTTTMADGSIADNWAVLDRQLVPRYTRDGQPDKSITYTRITCSAMSDERACHNPSVLKQVLGEYYPSITWYTCGDDGQL 606
Q NCAWQA+ITG + N AYPD +YQ+LVM K TE IFRV+ FP G RYFSLQSNN +VGFP++TI D++I+ D N + NP+ + P +G+YTI VTPRGD+G NE++LC + M+ +C + NA+++MRFYTS+PD ++S+TD S RLFGYA P+VE R K+ + ++W+ F CDQ+R T +T +I +F +IP + P + N+NF++Y+G D+++ GVYPNLDA YL+A WQ + + L+AR+TG LP+T+ N DPK +Y++ +VRY SFS+IA + PT+ ++DD+ RFY + + E R YS V TCGLYNAS +LFL+T + DG + D W +LDRQL+P+ R PD+S Y R+ C+ S AC +P LK V+ +YYP I WYTC DG L
Sbjct: 131 QRNCAWQAYITGKQY---NVAYPDLQAIYQVLVMLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTR-----NPFAEDSDRP---IGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVL-DGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTL 572
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03620.1 ID=NO11G03620.1|Name=NO11G03620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp
CAGCTCTTTTACAGACAGGGAAGGGACGCGAACGCTTACCGCAAGATCTC
CCGTCGTGATAGTAGCTAGACAATGCGGGCCCTCATCTCAAAGCTGGCAC
TATTGTGGACGCTGGCGCACCCAGGACCCGCGTCAAGCATTGATCGCAGC
GGCCCTAAGGACGAGGGCTACGCCGTGGGCCAGGCAGTTGCGGAGGCCTT
TAAAAGCAGCGGATATAATATCTCTTTCAATAAGATAGATACTGCTGACG
AGCAGCAGATGCCTTTCCAAAAAGAGGCCGAGCAGAGACAGAATGCCCAG
GATAATGGGAATCATGAGCACGACAGCCGCACTAAGGGCGGCATCCGACG
ACAGCTGGGGATAACCCCGTTTGGGTTACGACCCAGCACAATCGCGGATA
AGAAGGAAGCATATAAGAAATTCGCTGCCAAGCAGAATCTGGGGAGAGCT
TCCAGCCTTCAGATGGCCGGAAAGTGGAGTTCCAATAATGACGAGACACT
GGATTTGAAAGCAGTGACGGACGGCAAGCTGATGCAGCCCAACTGCGCCT
GGCAGGCCTTCATCACAGGCGGTAATCACGCCAACATTAACGCAGCCTAC
CCAGACTCCCACTGCGTATATCAGTTGCTGGTTATGACTAAGGTCACGGA
GGATCGCATCTTCCGCGTCAAGGCCAAGTTTCCCACCGGAGGCAATCGAT
ACTTCTCGCTGCAGTCGAACAATCCCAACGTGGGATTCCCTCTGGCAACC
ATCCCGGACTTTAAGATCAAGCCTGATCCTGGCGTGAACGCCAAAGGCAA
GCCCTGGAAGAACCCATATATGGCGGGCGAGGAAGTGCCGGACGACGAAG
TGGGGTCCTACACCATTTACGTGACGCCTCGCGGGGACAAGGGCTATCCG
AACGAGATCAATTTGTGCACGAAGGAAATGTCGGCCATAGAGTGCGGCAC
AACCAATGCTATCGTAGTCATGCGATTTTACACCTCTAACCCCGACATGG
GGATGCTGAACTCTGAGACGGACACGGGCGACAGCAATGAGCCCCGCCTC
TTTGGCTATGCGGGCATGCCAGTCGTAGAAGTACGCACGTGCAAGAATGG
ATGCATTGGCATGGCCGAGAAATGGAAGCCCTTTCGTCCCTGCGACCAGT
CTCGGCCCACACCCCTCACTAAGATGATCGAAGACAACTTTGCCAAGGTC
ATTCCAGGGTGGGGTACGCCCTCCTACCCCGACGTCAACGACAACTTCAT
CATGTACATGGGTCTGGACTCTAGCAGCAACGGCGTCTACCCTAACCTCG
ACGCAAATTATCTGGTTGCAAATACCTGGCAGGAGGCCGTTAAGGGTGCG
CCGGGCGGTAATCCCATGCTTGTAGCTCGAATTACGGGCAAGCTTCCCCT
CACGGCATGGAACTTTCATCACGACCCTAAGACGCACGACTATGAGAATT
ATGAAGTACGCTACAACTCTTTCTCTACAATTGCTAAGCTACAGACGGCC
CCCACCATCCAATCCGTGGATGACTCCGAGATCCGCCGCTTCTACCGGGG
CAAAATTACCGATTGGGAGACAACAAGGCCGTACAGCATCGTGGTCGGTC
CTAGCAAGGGTACCACCTGCGGCCTCTACAACGCCTCAAATGACCTCTTT
CTGACTACCACAATGGCGGACGGTAGCATCGCTGACAATTGGGCTGTCCT
TGACCGGCAGTTGGTGCCCAGGTATACGCGCGATGGTCAGCCCGACAAGT
CGATCACATACACCCGCATAACTTGCTCGGCGATGTCGGATGAGCGCGCT
TGCCACAACCCCTCCGTCCTCAAACAGGTACTGGGCGAGTACTACCCTAG
CATAACTTGGTATACTTGCGGCGATGATGGTCAGCTCCGTCCCGCGTTCC
CGCAGACTATGCTGGAGAAATACTTTGGTAAAAGGGAGGCGGGAAATGCG
GAGGGGGGATGAAAAGGATATGATGATTAGGAGTGAACAAGCCAAAACAT
GCATTTAATAAAGCATTTGGACAAGCTTTCCAAGACTATGATCCCCACCT
TGAGAGGGGGAAGAAAATCGAACATACGAGGGGAAAGGAACAGAAAGAGC
AGCTGGCGCTACAGCACCAGCAGCACCATTGCGAGCAGCAGCATGAGACA
GAGCAACATCCTCCTCCGAGAAGCAGGCAGCTAAATCGGGAGTGATGAGT
GATCTACAAAAGAATCTAAAAGAGCCAGGTGATGCCTGCTCCTCCACTAT
TCCTCTTAACTCCTCACTTACTTGTAAAGATAAATAACAGGTATTCAGAG
AACGGCCCCATGGCCGCATTAACTGTAGAGATTTTTATATGGGAGTGTTG
ATAGAACAATGGACAGAGTGAGAGCGAGAGCTGTAGACCAAACAAAAAAA
ATGGAATAAGAAGCTTTGTTAGTGTTAGGGTTAGATTTAGGTTTATAATA
ATAACGGACAGAGAATCAAAAAAAGAGCCCTGGGGGGGTTCCAACACAGT
AAAATGTAGACGTGACCCATAGCCGCCAGATATCAATAGTCGTATATGTA
TCTTTCATAAAACCAAGCAAGGCGTCAGAACACCCAGCGAGCGTTTCTCT
CTCATGGGCCTTCTCTCAACTTCGTGCACAAAAAGAACAAAAACATGAGC
TTGATGACGAA back to topprotein sequence of NO11G03620.1 >NO11G03620.1-protein ID=NO11G03620.1-protein|Name=NO11G03620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MRALISKLALLWTLAHPGPASSIDRSGPKDEGYAVGQAVAEAFKSSGYNI
SFNKIDTADEQQMPFQKEAEQRQNAQDNGNHEHDSRTKGGIRRQLGITPF
GLRPSTIADKKEAYKKFAAKQNLGRASSLQMAGKWSSNNDETLDLKAVTD
GKLMQPNCAWQAFITGGNHANINAAYPDSHCVYQLLVMTKVTEDRIFRVK
AKFPTGGNRYFSLQSNNPNVGFPLATIPDFKIKPDPGVNAKGKPWKNPYM
AGEEVPDDEVGSYTIYVTPRGDKGYPNEINLCTKEMSAIECGTTNAIVVM
RFYTSNPDMGMLNSETDTGDSNEPRLFGYAGMPVVEVRTCKNGCIGMAEK
WKPFRPCDQSRPTPLTKMIEDNFAKVIPGWGTPSYPDVNDNFIMYMGLDS
SSNGVYPNLDANYLVANTWQEAVKGAPGGNPMLVARITGKLPLTAWNFHH
DPKTHDYENYEVRYNSFSTIAKLQTAPTIQSVDDSEIRRFYRGKITDWET
TRPYSIVVGPSKGTTCGLYNASNDLFLTTTMADGSIADNWAVLDRQLVPR
YTRDGQPDKSITYTRITCSAMSDERACHNPSVLKQVLGEYYPSITWYTCG
DDGQLRPAFPQTMLEKYFGKREAGNAEGG* back to topmRNA from alignment at chr11:1164886..1167801+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03620.1 ID=NO11G03620.1|Name=NO11G03620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2916bp|location=Sequence derived from alignment at chr11:1164886..1167801+ (Nannochloropsis oceanica)
CAGCTCTTTTACAGACAGGGAAGGGACGCGAACGCTTACCGCAAGATCTC
CCGTCGTGATAGTAGCTAGACAATGCGGGCCCTCATCTCAAAGCTGGCAC
TATTGTGGACGCTGGCGCACCCAGGACCCGCGTCAAGGTAAAAATCTCAG
TTAGAGAGACGTACTTTCGCAGGAACACAGGCTGGTAGAGCTGTCAGCGC
TAGGAGGAAGAAATGCATTCCATTGAGTGGACCAGATATCTATGTGATAG
TTGGTTGGCTTTTCACGCCAGAAGACCCCTGTTTAGCCTGTTATCATGCT
CCTTCATTTCTACTAGGCGCCTCGTGATTTCCGTGACCCTTTTATAATTG
CTCATCCCCTCTTCCCCGTCCTCTTCTCTCTCATCCACAAAGCATTGATC
GCAGCGGCCCTAAGGACGAGGGCTACGCCGTGGGCCAGGCAGTTGCGGAG
GCCTTTAAAAGCAGCGGATATAATATCTCTTTCAATAAGATAGATACTGC
TGACGAGCAGCAGATGCCTTTCCAAAAAGAGGCCGAGCAGAGACAGAATG
CCCAGGATAATGGGAATCATGAGCACGACAGCCGCACTAAGGGCGGCATC
CGACGACAGCTGGGGATAACCCCGTTTGGGTTACGACCCAGCACAATCGC
GGATAAGAAGGAAGCATATAAGAAATTCGCTGCCAAGCAGAATCTGGGGA
GAGCTTCCAGCCTTCAGATGGCCGGAAAGTGGAGTTCCAATAATGACGAG
ACACTGGATTTGAAAGCAGTGACGGACGGCAAGCTGATGCAGCCCAACTG
CGCCTGGCAGGCCTTCATCACAGGCGGTAATCACGCCAACATTAACGCAG
CCTACCCAGACTCCCACTGCGTATATCAGTTGCTGGTTATGACTAAGGTC
ACGGAGGATCGCATCTTCCGCGTCAAGGCCAAGTTTCCCACCGGAGGCAA
TCGATACTTCTCGCTGCAGTCGAACAATCCCAACGTGGGATTCCCTCTGG
CAACCATCCCGGACTTTAAGATCAAGCCTGATCCTGGCGTGAACGCCAAA
GGCAAGCCCTGGAAGAACCCATATATGGCGGGCGAGGAAGTGCCGGACGA
CGAAGTGGGGTCCTACACCATTTACGTGACGCCTCGCGGGGACAAGGGCT
ATCCGAACGAGATCAATTTGTGCACGAAGGAAATGTCGGCCATAGAGTGC
GGCACAACCAATGCTATCGTAGTCATGCGATTTTACACCTCTAACCCCGA
CATGGGGATGCTGAACTCTGAGACGGACACGGGCGACAGCAATGAGCCCC
GCCTCTTTGGCTATGCGGGCATGCCAGTCGTAGAAGTACGCACGTGCAAG
AATGGATGCATTGGCATGGCCGAGAAATGGAAGCCCTTTCGTCCCTGCGA
CCAGTCTCGGCCCACACCCCTCACTAAGATGATCGAAGACAACTTTGCCA
AGGTCATTCCAGGGTGGGGTACGCCCTCCTACCCCGACGTCAACGACAAC
TTCATCATGTACATGGGTCTGGACTCTAGCAGCAACGGCGTCTACCCTAA
CCTCGACGCAAATTATCTGGTTGCAAATACCTGGCAGGAGGCCGTTAAGG
GTGCGCCGGGCGGTAATCCCATGCTTGTAGCTCGAATTACGGGCAAGCTT
CCCCTCACGGCATGGAACTTTCATCACGACCCTAAGACGCACGACTATGA
GAATTATGAAGTACGCTACAACTCTTTCTCTACAATTGCTAAGCTACAGA
CGGCCCCCACCATCCAATCCGTGGATGACTCCGAGATCCGCCGCTTCTAC
CGGGGCAAAATTACCGATTGGGAGACAACAAGGCCGTACAGCATCGTGGT
CGGTCCTAGCAAGGGTACCACCTGCGGCCTCTACAACGCCTCAAATGACC
TCTTTCTGACTACCACAATGGCGGACGGTAGCATCGCTGACAATTGGGCT
GTCCTTGACCGGCAGTTGGTGCCCAGGTATACGCGCGATGGTCAGCCCGA
CAAGTCGATCACATACACCCGCATAACTTGCTCGGCGATGTCGGATGAGC
GCGCTTGCCACAACCCCTCCGTCCTCAAACAGGTACTGGGCGAGTACTAC
CCTAGCATAACTTGGTATACTTGCGGCGATGATGGTCAGCTCCGTCCCGC
GTTCCCGCAGACTATGCTGGAGAAATACTTTGGTAAAAGGGAGGCGGGAA
ATGCGGAGGGGGGATGAAAAGGATATGATGATTAGGAGTGAACAAGCCAA
AACATGCATTTAATAAAGCATTTGGACAAGCTTTCCAAGACTATGATCCC
CACCTTGAGAGGGGGAAGAAAATCGAACATACGAGGGGAAAGGAACAGAA
AGAGCAGCTGGCGCTACAGCACCAGCAGCACCATTGCGAGCAGCAGCATG
AGACAGAGCAACATCCTCCTCCGAGAAGCAGGCAGCTAAATCGGGAGTGA
TGAGTGATCTACAAAAGAATCTAAAAGAGCCAGGTGATGCCTGCTCCTCC
ACTATTCCTCTTAACTCCTCACTTACTTGTAAAGATAAATAACAGGTATT
CAGAGAACGGCCCCATGGCCGCATTAACTGTAGAGATTTTTATATGGGAG
TGTTGATAGAACAATGGACAGAGTGAGAGCGAGAGCTGTAGACCAAACAA
AAAAAATGGAATAAGAAGCTTTGTTAGTGTTAGGGTTAGATTTAGGTTTA
TAATAATAACGGACAGAGAATCAAAAAAAGAGCCCTGGGGGGGTTCCAAC
ACAGTAAAATGTAGACGTGACCCATAGCCGCCAGATATCAATAGTCGTAT
ATGTATCTTTCATAAAACCAAGCAAGGCGTCAGAACACCCAGCGAGCGTT
TCTCTCTCATGGGCCTTCTCTCAACTTCGTGCACAAAAAGAACAAAAACA
TGAGCTTGATGACGAA back to topCoding sequence (CDS) from alignment at chr11:1164886..1167801+ >NO11G03620.1 ID=NO11G03620.1|Name=NO11G03620.1|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at chr11:1164886..1167801+ (Nannochloropsis oceanica)
ATGCGGGCCCTCATCTCAAAGCTGGCACTATTGTGGACGCTGGCGCACCC
AGGACCCGCGTCAAGCATTGATCGCAGCGGCCCTAAGGACGAGGGCTACG
CCGTGGGCCAGGCAGTTGCGGAGGCCTTTAAAAGCAGCGGATATAATATC
TCTTTCAATAAGATAGATACTGCTGACGAGCAGCAGATGCCTTTCCAAAA
AGAGGCCGAGCAGAGACAGAATGCCCAGGATAATGGGAATCATGAGCACG
ACAGCCGCACTAAGGGCGGCATCCGACGACAGCTGGGGATAACCCCGTTT
GGGTTACGACCCAGCACAATCGCGGATAAGAAGGAAGCATATAAGAAATT
CGCTGCCAAGCAGAATCTGGGGAGAGCTTCCAGCCTTCAGATGGCCGGAA
AGTGGAGTTCCAATAATGACGAGACACTGGATTTGAAAGCAGTGACGGAC
GGCAAGCTGATGCAGCCCAACTGCGCCTGGCAGGCCTTCATCACAGGCGG
TAATCACGCCAACATTAACGCAGCCTACCCAGACTCCCACTGCGTATATC
AGTTGCTGGTTATGACTAAGGTCACGGAGGATCGCATCTTCCGCGTCAAG
GCCAAGTTTCCCACCGGAGGCAATCGATACTTCTCGCTGCAGTCGAACAA
TCCCAACGTGGGATTCCCTCTGGCAACCATCCCGGACTTTAAGATCAAGC
CTGATCCTGGCGTGAACGCCAAAGGCAAGCCCTGGAAGAACCCATATATG
GCGGGCGAGGAAGTGCCGGACGACGAAGTGGGGTCCTACACCATTTACGT
GACGCCTCGCGGGGACAAGGGCTATCCGAACGAGATCAATTTGTGCACGA
AGGAAATGTCGGCCATAGAGTGCGGCACAACCAATGCTATCGTAGTCATG
CGATTTTACACCTCTAACCCCGACATGGGGATGCTGAACTCTGAGACGGA
CACGGGCGACAGCAATGAGCCCCGCCTCTTTGGCTATGCGGGCATGCCAG
TCGTAGAAGTACGCACGTGCAAGAATGGATGCATTGGCATGGCCGAGAAA
TGGAAGCCCTTTCGTCCCTGCGACCAGTCTCGGCCCACACCCCTCACTAA
GATGATCGAAGACAACTTTGCCAAGGTCATTCCAGGGTGGGGTACGCCCT
CCTACCCCGACGTCAACGACAACTTCATCATGTACATGGGTCTGGACTCT
AGCAGCAACGGCGTCTACCCTAACCTCGACGCAAATTATCTGGTTGCAAA
TACCTGGCAGGAGGCCGTTAAGGGTGCGCCGGGCGGTAATCCCATGCTTG
TAGCTCGAATTACGGGCAAGCTTCCCCTCACGGCATGGAACTTTCATCAC
GACCCTAAGACGCACGACTATGAGAATTATGAAGTACGCTACAACTCTTT
CTCTACAATTGCTAAGCTACAGACGGCCCCCACCATCCAATCCGTGGATG
ACTCCGAGATCCGCCGCTTCTACCGGGGCAAAATTACCGATTGGGAGACA
ACAAGGCCGTACAGCATCGTGGTCGGTCCTAGCAAGGGTACCACCTGCGG
CCTCTACAACGCCTCAAATGACCTCTTTCTGACTACCACAATGGCGGACG
GTAGCATCGCTGACAATTGGGCTGTCCTTGACCGGCAGTTGGTGCCCAGG
TATACGCGCGATGGTCAGCCCGACAAGTCGATCACATACACCCGCATAAC
TTGCTCGGCGATGTCGGATGAGCGCGCTTGCCACAACCCCTCCGTCCTCA
AACAGGTACTGGGCGAGTACTACCCTAGCATAACTTGGTATACTTGCGGC
GATGATGGTCAGCTCCGTCCCGCGTTCCCGCAGACTATGCTGGAGAAATA
CTTTGGTAAAAGGGAGGCGGGAAATGCGGAGGGGGGATGA back to top
|