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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:1162027..1164117 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03610.1 vs.
Match: XP_005852554.1 (signal recognition particle subunit SRP68, partial [Nannochloropsis gaditana CCMP526]; EKU23278.1 signal recognition particle subunit SRP68, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 381.7 bits (979), Expect = 4.800e-102 Identity = 218/340 (64.12%), Postives = 256/340 (75.29%), Query Frame = 0
Query: 1 MAADDA--QDNVNGAT--IIEDSGKTPPPPLNLRLHHMLRSLQLQHGLRHGDYQRYRHYVTRRLARLRKAGKATHKGGKAFATKDVHTLASVGGDPAAVKIEHLLLLLLNAERAWAFAMQVKQDAASNQHMPSYQRAHLLRRLRRAAVWATRLQGLVGEASGHVTKRTSLEVAAYAGWMAAGVDVEQEQWEAALGKLRTAHSILSQLGEVGSAEEQDLFSSKAEEVMQSARFCQYNLGEGSLEDLQ-----QVQREYVPQGLREKLEAVMEASRTEAATGLETVEWGGRHVPVSSAEVRVALVKVIEARKRLYTSKENEEVGQQQKQEQESQREEAYSSV 332
MAAD+ +D N A + S P L+L LHHMLR+LQLQHGLRHGDYQRYRHY+ RRLARLRK ATH+GGKAF +K+VH+LA + GDP+A+K EHLLL+LLNAERAWAFAM ++QDAA NQHMPSY R+HLLRRLRRA VWA RL GLV +AS VT+RTSLEV AYAGWM A VDVEQE+W AL KLRTAHSILSQLGE+GS EEQDLF SKA+EV+QSAR+CQYNLGEGS EDL + +P+ L EKL AV EASR AATGLETVEWGGR + VSS EVR+AL+K+ EAR L + + + ++ REE Y++V
Sbjct: 1 MAADNHVHEDESNDAVTPLGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDPSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTAHSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVEWGGRQLHVSSKEVRLALIKLEEARTALDSWLRSMAGAKVKQGVGGGVREEPYAAV 340
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03610.1 ID=NO11G03610.1|Name=NO11G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp
ATGGCGGCGGACGATGCCCAAGACAATGTGAACGGTGCAACAATCATTGA
GGATTCTGGCAAGACGCCTCCTCCTCCCCTGAACTTGCGACTCCACCACA
TGCTCCGCTCCCTTCAACTCCAGCACGGCCTTAGACACGGTGACTACCAA
CGCTACCGCCACTACGTCACGCGCCGCCTCGCCCGCCTCCGCAAGGCGGG
GAAGGCTACGCACAAGGGCGGCAAGGCCTTTGCAACCAAGGACGTGCACA
CCCTGGCGAGCGTGGGTGGCGACCCGGCGGCTGTAAAGATCGAGCACCTG
CTGCTATTGCTCCTGAACGCGGAACGGGCCTGGGCATTTGCGATGCAGGT
CAAGCAAGACGCGGCCAGCAACCAGCACATGCCCAGCTACCAGCGTGCCC
ATCTATTGCGCCGCCTCCGCCGGGCAGCTGTGTGGGCCACGCGCTTGCAG
GGCTTAGTAGGGGAGGCGAGCGGGCATGTCACCAAACGAACGTCATTGGA
AGTGGCGGCTTACGCGGGCTGGATGGCGGCGGGCGTGGACGTGGAACAGG
AGCAGTGGGAAGCGGCTCTGGGTAAGCTGCGTACGGCGCACTCGATCCTG
AGCCAGCTAGGGGAGGTGGGGTCGGCGGAGGAGCAGGATTTGTTCTCGAG
TAAGGCGGAGGAAGTGATGCAGTCGGCCCGCTTTTGCCAATACAATTTAG
GGGAGGGCTCGCTTGAGGACCTGCAGCAGGTGCAGAGAGAATACGTCCCG
CAAGGGCTGAGGGAGAAGCTGGAGGCGGTGATGGAGGCCTCACGGACCGA
GGCGGCCACTGGCTTGGAGACCGTGGAGTGGGGCGGCCGGCACGTGCCTG
TTTCGAGCGCCGAGGTGCGGGTTGCCTTGGTCAAAGTAATTGAAGCTCGC
AAGCGTCTATATACCTCCAAAGAGAACGAAGAGGTGGGACAGCAGCAGAA
GCAGGAGCAGGAGAGCCAAAGGGAGGAAGCATACTCGAGTGTGTACGCAG
CCTACGATGAGGCCTTGAAGCGGGTAGCAGCGGCGGCGGACAAGGTCGAG
GGCATGAGCCATGGTGCCCGTGTGGACGCCCACAAGGAAGAGCTCAAACT
GCTGGCTAGCTACCTGCGGCACGGAAAGCTCGAGACCATGCGCCTGCGGA
AGGAGGTGTTGGTTCAGAGCTTGCTGCGAGGCAGCAATGCGGGCGGGAAA
CGGGAGGGGAGAGGGAGGCCGGAGGACCTGGTGCACGTGTTGGACGCCTT
GATGCAGAACGTGGTTGAGGTTCAGGCCTTGCCAGGTGTAGAAGAGCTCG
AGCCCGTCTTGACGCAAGCGCAGGCCCTCGAAGCTCGCTACCGGGCCCAG
CGTGCATTTTACCTGGCAGAGTGCTATGCAGGGGAGAAGAAGCTGGCCGA
GGCCATAGCCCTCTTCGCGAAGGCGGAGACTCTGGGGGAAATGGCGGTTA
GTCTGGCGAAAGAGGTGGTGGGGAAGGAGCAGAAGGAGGGCATGCTTAAG
GAGGCCCGAGAGGTGAAAGTAATGGCGGCGGGGGGTAGATGCCGAACTCA
AGCCTTGGCTCTGCTGGCTTCCTTGTCCCCGGCTGCTGCCAGTGGGGCGG
TGAGTGAGGAGGCGGCCTTGACGGTTGCACTCTCGGCGCTTTCGCTCTCG
GCCGCAACTGCTGCGCGAGCGGAAGATGGAGCGGAAAAAAGAAGCAAAGG
AATGAAGATGCAGCAGCAGCAGAAGAAGGGCAAGGATACGCGGTCGCCGC
AGCAGTCGGGCACGAGCACGGCAAAAGCAATGTCAGGCGCGTCATCGAGG
GGCCCAAAAGCAGGCACTGACTTTGAACCGGCGTCACGGACCTTGCTGGA
ACGGTTGGGGGAGATCGATGGCGGCAAGGAGATCAGTGGATTTGGTATCG
CGCGCATGCCACCCACGGTGATGCCGGTACGGGCCAAGCCCCAGCTTTTC
GATATGGCCTTCAACTTTCTGGAAGGACGCTTGCCAGACCTAGCTATCAA
AGCGGGTCTGCCCCCGAACAAGAGGGCAGGCCCACGGGGGGGAGAAGGTT
CGTCCGGAGTTGGAGGGTTGTTTGGGTGGTTGAGAGGATAG back to topprotein sequence of NO11G03610.1 >NO11G03610.1-protein ID=NO11G03610.1-protein|Name=NO11G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MAADDAQDNVNGATIIEDSGKTPPPPLNLRLHHMLRSLQLQHGLRHGDYQ
RYRHYVTRRLARLRKAGKATHKGGKAFATKDVHTLASVGGDPAAVKIEHL
LLLLLNAERAWAFAMQVKQDAASNQHMPSYQRAHLLRRLRRAAVWATRLQ
GLVGEASGHVTKRTSLEVAAYAGWMAAGVDVEQEQWEAALGKLRTAHSIL
SQLGEVGSAEEQDLFSSKAEEVMQSARFCQYNLGEGSLEDLQQVQREYVP
QGLREKLEAVMEASRTEAATGLETVEWGGRHVPVSSAEVRVALVKVIEAR
KRLYTSKENEEVGQQQKQEQESQREEAYSSVYAAYDEALKRVAAAADKVE
GMSHGARVDAHKEELKLLASYLRHGKLETMRLRKEVLVQSLLRGSNAGGK
REGRGRPEDLVHVLDALMQNVVEVQALPGVEELEPVLTQAQALEARYRAQ
RAFYLAECYAGEKKLAEAIALFAKAETLGEMAVSLAKEVVGKEQKEGMLK
EAREVKVMAAGGRCRTQALALLASLSPAAASGAVSEEAALTVALSALSLS
AATAARAEDGAEKRSKGMKMQQQQKKGKDTRSPQQSGTSTAKAMSGASSR
GPKAGTDFEPASRTLLERLGEIDGGKEISGFGIARMPPTVMPVRAKPQLF
DMAFNFLEGRLPDLAIKAGLPPNKRAGPRGGEGSSGVGGLFGWLRG* back to topmRNA from alignment at chr11:1162027..1164117+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03610.1 ID=NO11G03610.1|Name=NO11G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at chr11:1162027..1164117+ (Nannochloropsis oceanica)
ATGGCGGCGGACGATGCCCAAGACAATGTGAACGGTGCAACAATCATTGA
GGATTCTGGCAAGACGCCTCCTCCTCCCCTGAACTTGCGACTCCACCACA
TGCTCCGCTCCCTTCAACTCCAGCACGGCCTTAGACACGGTGACTACCAA
CGCTACCGCCACTACGTCACGCGCCGCCTCGCCCGCCTCCGCAAGGCGGG
GAAGGCTACGCACAAGGGCGGCAAGGCCTTTGCAACCAAGGACGTGCACA
CCCTGGCGAGCGTGGGTGGCGACCCGGCGGCTGTAAAGATCGAGCACCTG
CTGCTATTGCTCCTGAACGCGGAACGGGCCTGGGCATTTGCGATGCAGGT
CAAGCAAGACGCGGCCAGCAACCAGCACATGCCCAGCTACCAGCGTGCCC
ATCTATTGCGCCGCCTCCGCCGGGCAGCTGTGTGGGCCACGCGCTTGCAG
GGCTTAGTAGGGGAGGCGAGCGGGCATGTCACCAAACGAACGTCATTGGA
AGTGGCGGCTTACGCGGGCTGGATGGCGGCGGGCGTGGACGTGGAACAGG
AGCAGTGGGAAGCGGCTCTGGGTAAGCTGCGTACGGCGCACTCGATCCTG
AGCCAGCTAGGGGAGGTGGGGTCGGCGGAGGAGCAGGATTTGTTCTCGAG
TAAGGCGGAGGAAGTGATGCAGTCGGCCCGCTTTTGCCAATACAATTTAG
GGGAGGGCTCGCTTGAGGACCTGCAGCAGGTGCAGAGAGAATACGTCCCG
CAAGGGCTGAGGGAGAAGCTGGAGGCGGTGATGGAGGCCTCACGGACCGA
GGCGGCCACTGGCTTGGAGACCGTGGAGTGGGGCGGCCGGCACGTGCCTG
TTTCGAGCGCCGAGGTGCGGGTTGCCTTGGTCAAAGTAATTGAAGCTCGC
AAGCGTCTATATACCTCCAAAGAGAACGAAGAGGTGGGACAGCAGCAGAA
GCAGGAGCAGGAGAGCCAAAGGGAGGAAGCATACTCGAGTGTGTACGCAG
CCTACGATGAGGCCTTGAAGCGGGTAGCAGCGGCGGCGGACAAGGTCGAG
GGCATGAGCCATGGTGCCCGTGTGGACGCCCACAAGGAAGAGCTCAAACT
GCTGGCTAGCTACCTGCGGCACGGAAAGCTCGAGACCATGCGCCTGCGGA
AGGAGGTGTTGGTTCAGAGCTTGCTGCGAGGCAGCAATGCGGGCGGGAAA
CGGGAGGGGAGAGGGAGGCCGGAGGACCTGGTGCACGTGTTGGACGCCTT
GATGCAGAACGTGGTTGAGGTTCAGGCCTTGCCAGGTGTAGAAGAGCTCG
AGCCCGTCTTGACGCAAGCGCAGGCCCTCGAAGCTCGCTACCGGGCCCAG
CGTGCATTTTACCTGGCAGAGTGCTATGCAGGGGAGAAGAAGCTGGCCGA
GGCCATAGCCCTCTTCGCGAAGGCGGAGACTCTGGGGGAAATGGCGGTTA
GTCTGGCGAAAGAGGTGGTGGGGAAGGAGCAGAAGGAGGGCATGCTTAAG
GAGGCCCGAGAGGTGAAAGTAATGGCGGCGGGGGGTAGATGCCGAACTCA
AGCCTTGGCTCTGCTGGCTTCCTTGTCCCCGGCTGCTGCCAGTGGGGCGG
TGAGTGAGGAGGCGGCCTTGACGGTTGCACTCTCGGCGCTTTCGCTCTCG
GCCGCAACTGCTGCGCGAGCGGAAGATGGAGCGGAAAAAAGAAGCAAAGG
AATGAAGATGCAGCAGCAGCAGAAGAAGGGCAAGGATACGCGGTCGCCGC
AGCAGTCGGGCACGAGCACGGCAAAAGCAATGTCAGGCGCGTCATCGAGG
GGCCCAAAAGCAGGCACTGACTTTGAACCGGCGTCACGGACCTTGCTGGA
ACGGTTGGGGGAGATCGATGGCGGCAAGGAGATCAGTGGATTTGGTATCG
CGCGCATGCCACCCACGGTGATGCCGGTACGGGCCAAGCCCCAGCTTTTC
GATATGGCCTTCAACTTTCTGGAAGGACGCTTGCCAGACCTAGCTATCAA
AGCGGGTCTGCCCCCGAACAAGAGGGCAGGCCCACGGGGGGGAGAAGGTT
CGTCCGGAGTTGGAGGGTTGTTTGGGTGGTTGAGAGGATAG back to topCoding sequence (CDS) from alignment at chr11:1162027..1164117+ >NO11G03610.1 ID=NO11G03610.1|Name=NO11G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at chr11:1162027..1164117+ (Nannochloropsis oceanica)
ATGGCGGCGGACGATGCCCAAGACAATGTGAACGGTGCAACAATCATTGA
GGATTCTGGCAAGACGCCTCCTCCTCCCCTGAACTTGCGACTCCACCACA
TGCTCCGCTCCCTTCAACTCCAGCACGGCCTTAGACACGGTGACTACCAA
CGCTACCGCCACTACGTCACGCGCCGCCTCGCCCGCCTCCGCAAGGCGGG
GAAGGCTACGCACAAGGGCGGCAAGGCCTTTGCAACCAAGGACGTGCACA
CCCTGGCGAGCGTGGGTGGCGACCCGGCGGCTGTAAAGATCGAGCACCTG
CTGCTATTGCTCCTGAACGCGGAACGGGCCTGGGCATTTGCGATGCAGGT
CAAGCAAGACGCGGCCAGCAACCAGCACATGCCCAGCTACCAGCGTGCCC
ATCTATTGCGCCGCCTCCGCCGGGCAGCTGTGTGGGCCACGCGCTTGCAG
GGCTTAGTAGGGGAGGCGAGCGGGCATGTCACCAAACGAACGTCATTGGA
AGTGGCGGCTTACGCGGGCTGGATGGCGGCGGGCGTGGACGTGGAACAGG
AGCAGTGGGAAGCGGCTCTGGGTAAGCTGCGTACGGCGCACTCGATCCTG
AGCCAGCTAGGGGAGGTGGGGTCGGCGGAGGAGCAGGATTTGTTCTCGAG
TAAGGCGGAGGAAGTGATGCAGTCGGCCCGCTTTTGCCAATACAATTTAG
GGGAGGGCTCGCTTGAGGACCTGCAGCAGGTGCAGAGAGAATACGTCCCG
CAAGGGCTGAGGGAGAAGCTGGAGGCGGTGATGGAGGCCTCACGGACCGA
GGCGGCCACTGGCTTGGAGACCGTGGAGTGGGGCGGCCGGCACGTGCCTG
TTTCGAGCGCCGAGGTGCGGGTTGCCTTGGTCAAAGTAATTGAAGCTCGC
AAGCGTCTATATACCTCCAAAGAGAACGAAGAGGTGGGACAGCAGCAGAA
GCAGGAGCAGGAGAGCCAAAGGGAGGAAGCATACTCGAGTGTGTACGCAG
CCTACGATGAGGCCTTGAAGCGGGTAGCAGCGGCGGCGGACAAGGTCGAG
GGCATGAGCCATGGTGCCCGTGTGGACGCCCACAAGGAAGAGCTCAAACT
GCTGGCTAGCTACCTGCGGCACGGAAAGCTCGAGACCATGCGCCTGCGGA
AGGAGGTGTTGGTTCAGAGCTTGCTGCGAGGCAGCAATGCGGGCGGGAAA
CGGGAGGGGAGAGGGAGGCCGGAGGACCTGGTGCACGTGTTGGACGCCTT
GATGCAGAACGTGGTTGAGGTTCAGGCCTTGCCAGGTGTAGAAGAGCTCG
AGCCCGTCTTGACGCAAGCGCAGGCCCTCGAAGCTCGCTACCGGGCCCAG
CGTGCATTTTACCTGGCAGAGTGCTATGCAGGGGAGAAGAAGCTGGCCGA
GGCCATAGCCCTCTTCGCGAAGGCGGAGACTCTGGGGGAAATGGCGGTTA
GTCTGGCGAAAGAGGTGGTGGGGAAGGAGCAGAAGGAGGGCATGCTTAAG
GAGGCCCGAGAGGTGAAAGTAATGGCGGCGGGGGGTAGATGCCGAACTCA
AGCCTTGGCTCTGCTGGCTTCCTTGTCCCCGGCTGCTGCCAGTGGGGCGG
TGAGTGAGGAGGCGGCCTTGACGGTTGCACTCTCGGCGCTTTCGCTCTCG
GCCGCAACTGCTGCGCGAGCGGAAGATGGAGCGGAAAAAAGAAGCAAAGG
AATGAAGATGCAGCAGCAGCAGAAGAAGGGCAAGGATACGCGGTCGCCGC
AGCAGTCGGGCACGAGCACGGCAAAAGCAATGTCAGGCGCGTCATCGAGG
GGCCCAAAAGCAGGCACTGACTTTGAACCGGCGTCACGGACCTTGCTGGA
ACGGTTGGGGGAGATCGATGGCGGCAAGGAGATCAGTGGATTTGGTATCG
CGCGCATGCCACCCACGGTGATGCCGGTACGGGCCAAGCCCCAGCTTTTC
GATATGGCCTTCAACTTTCTGGAAGGACGCTTGCCAGACCTAGCTATCAA
AGCGGGTCTGCCCCCGAACAAGAGGGCAGGCCCACGGGGGGGAGAAGGTT
CGTCCGGAGTTGGAGGGTTGTTTGGGTGGTTGAGAGGATAG back to top
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