NO11G03590.1, NO11G03590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03590.1
Unique NameNO11G03590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length843
Alignment locationchr11:1154383..1155759 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1154383..1155759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03590.1 vs.
Match: EWM24833.1 (uncharacterized protein ycf23-like isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 433.0 bits (1112), Expect = 7.300e-118
Identity = 235/280 (83.93%), Postives = 259/280 (92.50%), Query Frame = 0 
Query:    1 MRVLTFATVCMASASAFHISMMATPASGPRFHKEIMRPFREGRAFKVIAGLTNFDRDSVGRIARAAGMGGATHLDLAADPELVALAKAQAPRVRTMVSAIDPEKFVPCVEAGVDMIELGNFDAFYSSGLRFSSLDILDLTKRTQALCPRTPLSVTIPHVLAMEEQAQLALSLAGLGVDVIQTEGAPSISTMSTGLTAAIEKAAPALAATYVLSRALAGKGTLVMAASGMNEVTAPMALVSGAQGVGVGTAISGLDSEAAMATKVREIVRALQRNKVQMQH 281
            MR++TF T C+AS SAF++  MATPA+GPRFHKE +RPFREGRAFKVIAGLTNFD +SVGRIARAA +GGATH+DLAADP+LVAL K  A RVRT+VSAIDPEKFVPCVEAGVDM+ELGNFDAFY+SGLRFSSLDILDLT+RT+ LCPRTPLSVTIPHVLAMEEQAQLALSLA LGVDVIQTEGAPSISTMSTG+ A+IEKAAPALA+TYVLSRALAG+ T VMAASGMNEVTAPMALVSGA+GVGVG+AI+ LDSEA MATKVREIVRALQRNK  MQ+
Sbjct:  115 MRLITFTTFCIASTSAFNL-FMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGR-THVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN 392
The following BLAST results are available for this feature:
BLAST of NO11G03590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24833.17.300e-11883.93uncharacterized protein ycf23-like isoform 1 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03590NO11G03590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03590.1NO11G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03590.1.cds1NO11G03590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03590.1.cds2NO11G03590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03590.1 ID=NO11G03590.1|Name=NO11G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
ATGCGCGTCTTGACATTCGCCACGGTCTGCATGGCCTCTGCCTCGGCCTT
CCATATCTCCATGATGGCCACACCCGCCTCGGGTCCCCGGTTTCACAAAG
AGATCATGCGGCCCTTCAGGGAAGGTCGAGCCTTTAAGGTGATTGCGGGC
CTGACAAATTTCGATCGCGACTCGGTCGGCCGCATCGCGCGTGCCGCTGG
CATGGGCGGGGCCACTCACTTGGACCTGGCCGCAGACCCCGAATTGGTGG
CCCTGGCCAAAGCCCAGGCGCCCCGTGTGCGCACCATGGTCTCAGCCATC
GATCCCGAGAAGTTCGTGCCCTGCGTGGAGGCGGGCGTGGACATGATCGA
GCTGGGCAACTTCGACGCCTTCTATTCCTCGGGCCTGCGCTTCTCCTCCC
TGGACATCCTGGATCTGACCAAGCGCACGCAGGCCTTGTGTCCGCGCACG
CCGCTCTCTGTGACCATCCCGCACGTGCTGGCCATGGAGGAGCAGGCGCA
GCTGGCCTTGTCTCTGGCTGGGCTAGGCGTGGACGTAATCCAGACGGAGG
GCGCCCCCTCGATCTCCACAATGAGCACGGGCCTGACCGCCGCCATCGAG
AAGGCCGCCCCCGCCCTGGCCGCCACATACGTGCTTTCACGGGCGCTGGC
TGGCAAAGGCACGCTTGTGATGGCGGCGTCGGGCATGAACGAGGTGACGG
CGCCGATGGCGCTGGTCTCGGGCGCGCAGGGCGTGGGGGTGGGGACTGCC
ATCTCTGGCTTGGATTCGGAGGCCGCCATGGCCACCAAAGTCCGCGAGAT
CGTGCGGGCCCTGCAGCGGAACAAGGTGCAGATGCAGCATTAG
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protein sequence of NO11G03590.1

>NO11G03590.1-protein ID=NO11G03590.1-protein|Name=NO11G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MRVLTFATVCMASASAFHISMMATPASGPRFHKEIMRPFREGRAFKVIAG
LTNFDRDSVGRIARAAGMGGATHLDLAADPELVALAKAQAPRVRTMVSAI
DPEKFVPCVEAGVDMIELGNFDAFYSSGLRFSSLDILDLTKRTQALCPRT
PLSVTIPHVLAMEEQAQLALSLAGLGVDVIQTEGAPSISTMSTGLTAAIE
KAAPALAATYVLSRALAGKGTLVMAASGMNEVTAPMALVSGAQGVGVGTA
ISGLDSEAAMATKVREIVRALQRNKVQMQH*
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mRNA from alignment at chr11:1154383..1155759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03590.1 ID=NO11G03590.1|Name=NO11G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp|location=Sequence derived from alignment at chr11:1154383..1155759- (Nannochloropsis oceanica)
ATGCGCGTCTTGACATTCGCCACGGTCTGCATGGCCTCTGCCTCGGCCTT
CCATATCTCCATGATGGCCACACCCGCCTCGGGTCCCCGGTTTCACAAAG
AGGTGAGTCTTTCACTTAAGGAGCGCACTTGTTAGATTCCCCCTCTCCTC
AGTCACCTTTTAATGTCTTCAATCCCTGAGCCTTCGCCCGCCATCTCCTC
TGCATATACCTGCTGGTACTTATGCACTAGAGGCTGTATGGACCCTAGTC
ACATTGTCCGTCCAGGTCTTCGATGGTAGTGTGAGAGTGTACAAGGAGGG
GGAGGAGGAAGGAGGAAGGCCTCCCTTATGCAAACCCTTTGAAATCCTCC
GTCTCCATCGTTCAGCATCACCATGCCACCACGTTCCACACATTCCACCT
CATTCTCATTTATCGTTAACATCGGCCATTTCTTTACGTTTGATGTCTCT
TATACTCCTTCCTAAGGTAGCCTTTGCACCACACCACACCACACCACACC
ACACCACACCATCACACCCTTCGCATTTGTCTCTCCTATGCCTTCATCCC
ACTCATCCTATGGCTTCATCCCACTCATCTTTTCCATTTCCTCCCAACTC
ATCCCCACCTTCCACTCTCATATGCCTTATACACAGATCATGCGGCCCTT
CAGGGAAGGTCGAGCCTTTAAGGTGATTGCGGGCCTGACAAATTTCGATC
GCGACTCGGTCGGCCGCATCGCGCGTGCCGCTGGCATGGGCGGGGCCACT
CACTTGGACCTGGCCGCAGACCCCGAATTGGTGGCCCTGGCCAAAGCCCA
GGCGCCCCGTGTGCGCACCATGGTCTCAGCCATCGATCCCGAGAAGTTCG
TGCCCTGCGTGGAGGCGGGCGTGGACATGATCGAGCTGGGCAACTTCGAC
GCCTTCTATTCCTCGGGCCTGCGCTTCTCCTCCCTGGACATCCTGGATCT
GACCAAGCGCACGCAGGCCTTGTGTCCGCGCACGCCGCTCTCTGTGACCA
TCCCGCACGTGCTGGCCATGGAGGAGCAGGCGCAGCTGGCCTTGTCTCTG
GCTGGGCTAGGCGTGGACGTAATCCAGACGGAGGGCGCCCCCTCGATCTC
CACAATGAGCACGGGCCTGACCGCCGCCATCGAGAAGGCCGCCCCCGCCC
TGGCCGCCACATACGTGCTTTCACGGGCGCTGGCTGGCAAAGGCACGCTT
GTGATGGCGGCGTCGGGCATGAACGAGGTGACGGCGCCGATGGCGCTGGT
CTCGGGCGCGCAGGGCGTGGGGGTGGGGACTGCCATCTCTGGCTTGGATT
CGGAGGCCGCCATGGCCACCAAAGTCCGCGAGATCGTGCGGGCCCTGCAG
CGGAACAAGGTGCAGATGCAGCATTAG
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Coding sequence (CDS) from alignment at chr11:1154383..1155759-

>NO11G03590.1 ID=NO11G03590.1|Name=NO11G03590.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr11:1154383..1155759- (Nannochloropsis oceanica)
ATGCGCGTCTTGACATTCGCCACGGTCTGCATGGCCTCTGCCTCGGCCTT
CCATATCTCCATGATGGCCACACCCGCCTCGGGTCCCCGGTTTCACAAAG
AGATCATGCGGCCCTTCAGGGAAGGTCGAGCCTTTAAGGTGATTGCGGGC
CTGACAAATTTCGATCGCGACTCGGTCGGCCGCATCGCGCGTGCCGCTGG
CATGGGCGGGGCCACTCACTTGGACCTGGCCGCAGACCCCGAATTGGTGG
CCCTGGCCAAAGCCCAGGCGCCCCGTGTGCGCACCATGGTCTCAGCCATC
GATCCCGAGAAGTTCGTGCCCTGCGTGGAGGCGGGCGTGGACATGATCGA
GCTGGGCAACTTCGACGCCTTCTATTCCTCGGGCCTGCGCTTCTCCTCCC
TGGACATCCTGGATCTGACCAAGCGCACGCAGGCCTTGTGTCCGCGCACG
CCGCTCTCTGTGACCATCCCGCACGTGCTGGCCATGGAGGAGCAGGCGCA
GCTGGCCTTGTCTCTGGCTGGGCTAGGCGTGGACGTAATCCAGACGGAGG
GCGCCCCCTCGATCTCCACAATGAGCACGGGCCTGACCGCCGCCATCGAG
AAGGCCGCCCCCGCCCTGGCCGCCACATACGTGCTTTCACGGGCGCTGGC
TGGCAAAGGCACGCTTGTGATGGCGGCGTCGGGCATGAACGAGGTGACGG
CGCCGATGGCGCTGGTCTCGGGCGCGCAGGGCGTGGGGGTGGGGACTGCC
ATCTCTGGCTTGGATTCGGAGGCCGCCATGGCCACCAAAGTCCGCGAGAT
CGTGCGGGCCCTGCAGCGGAACAAGGTGCAGATGCAGCATTAG
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Synonyms
Publications